Email l.a.kelley@imperial.ac.uk Description P75783 Date Thu Jan 5 12:14:05 GMT 2012 Unique Job ID 785c43833a7cfdad

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vv5D_ 100.0 20 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 2 d2vv5a2 99.4 16 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 3 d2vv5a1 99.0 28 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 4 d2vv5a3 98.2 19 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 5 c2e6zA_ 78.1 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 6 d1nz9a_ 77.8 33 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 7 c2vfyA_ 77.5 13 PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain 8 c2kvqG_ 76.9 22 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 9 c2jvvA_ 76.9 22 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 10 d1nppa2 76.4 43 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 11 d2hqha1 75.6 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 12 d2dfaa1 75.2 23 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 13 c2zkrt_ 71.8 16 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 14 c3p8bB_ 69.9 20 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 15 d2cqaa1 69.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 16 d1v6ta_ 68.2 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 17 d2cp6a1 66.4 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 18 c1oy8A_ 65.8 13 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 19 c2d5wA_ 65.5 15 PDB header:peptide binding protein Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide 20 d1t9ha1 64.3 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 21 d1u0la1 not modelled 63.0 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 c2x5cB_ not modelled 62.8 21 PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein orf131; PDBTitle: crystal structure of hypothetical protein orf131 from2 pyrobaculum spherical virus 23 c3ftjA_ not modelled 60.3 18 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 24 d1whka_ not modelled 59.7 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 25 c3ry3B_ not modelled 58.1 20 PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. 26 d1vqot1 not modelled 55.9 30 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 27 d1h6za2 not modelled 55.0 26 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 28 c3pamB_ not modelled 54.5 18 PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1 29 c2rcnA_ not modelled 54.3 31 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 30 c4a1cS_ not modelled 53.1 25 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 31 d1vqoq1 not modelled 52.7 30 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 32 d2coya1 not modelled 51.6 23 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 33 d1whma_ not modelled 51.5 18 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 34 d2p13a1 not modelled 51.0 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 35 d1whja_ not modelled 50.5 33 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 36 c1t9hA_ not modelled 50.4 21 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 37 d2do3a1 not modelled 50.2 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 38 d2e3ia1 not modelled 50.2 15 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 39 d2cp5a1 not modelled 50.1 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 40 d2cp2a1 not modelled 48.8 25 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 41 c2e4hA_ not modelled 48.8 27 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 42 d2plsa1 not modelled 48.6 20 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 43 c1m1gB_ not modelled 48.3 43 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 44 c2z0wA_ not modelled 48.1 20 PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer 45 d1khia1 not modelled 47.1 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 46 d2o1ra1 not modelled 47.0 14 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 47 d2coza1 not modelled 47.0 27 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 48 d1bkba1 not modelled 46.9 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 49 d2e3ha1 not modelled 46.9 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 50 d1ppje2 not modelled 46.7 4 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 51 c3nkuA_ not modelled 45.9 28 PDB header:protein transport Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of the n-terminal domain of drra/sidm from2 legionella pneumophila 52 c2omdB_ not modelled 45.7 13 PDB header:lyase Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5 53 c2jxfA_ not modelled 45.1 18 PDB header:viral protein, membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: the solution structure of hcv ns4b(40-69) 54 c3iz5Y_ not modelled 45.1 19 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 55 c3ftoA_ not modelled 45.1 16 PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation 56 d1dpea_ not modelled 44.9 25 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 57 c2qieA_ not modelled 44.8 16 PDB header:transferase Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 58 c2grvC_ not modelled 44.6 17 PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw 59 d1kbla2 not modelled 44.5 19 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 60 d1iuha_ not modelled 44.3 12 Fold:LigT-like Superfamily:LigT-like Family:2'-5' RNA ligase LigT 61 c3tpaA_ not modelled 44.2 14 PDB header:heme binding protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: structure of hbpa2 from haemophilus parasuis 62 d1iz6a1 not modelled 43.4 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 63 d1u7ka_ not modelled 43.2 20 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 64 d1s04a_ not modelled 43.2 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 65 d2cowa1 not modelled 43.1 32 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 66 c1u0lB_ not modelled 42.8 25 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 67 d1iwga1 not modelled 42.4 16 Fold:Ferredoxin-like Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 68 d1xoca1 not modelled 42.3 20 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 69 d2cp0a1 not modelled 42.0 31 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 70 c2wctC_ not modelled 41.9 32 PDB header:rna-binding protein Chain: C: PDB Molecule:non-structural protein 3; PDBTitle: human sars coronavirus unique domain (triclinic form) 71 d1vbga2 not modelled 41.0 19 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 72 c3dedB_ not modelled 40.9 13 PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum 73 d1vr5a1 not modelled 40.9 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 74 c3lvuB_ not modelled 40.4 17 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi 75 c3iz5U_ not modelled 40.3 34 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 76 c2o7jA_ not modelled 40.0 18 PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose 77 c4a1aP_ not modelled 39.6 41 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 78 d2cp3a1 not modelled 39.6 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 79 d2eyqa1 not modelled 39.6 16 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 80 d3deda1 not modelled 39.6 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 81 d1whha_ not modelled 39.3 22 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 82 d1xnea_ not modelled 39.2 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 83 c2e70A_ not modelled 39.2 20 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 84 c1ztyA_ not modelled 39.0 14 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 85 d2nqwa1 not modelled 39.0 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 86 d1m9dc_ not modelled 38.9 21 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 87 d2eifa1 not modelled 38.7 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 88 d1v6ga2 not modelled 37.9 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 89 d1yvca1 not modelled 37.7 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 90 d1e32a3 not modelled 37.7 18 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 91 c3llbA_ not modelled 37.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1 92 d1m9fd_ not modelled 37.0 15 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 93 c2yv5A_ not modelled 36.6 16 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 94 d1bbua1 not modelled 36.4 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 95 d1zyma2 not modelled 35.8 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system 96 d2pxrc1 not modelled 35.5 17 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 97 d1bcce2 not modelled 34.4 9 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 98 c2ivwA_ not modelled 34.4 20 PDB header:lipoprotein Chain: A: PDB Molecule:pilp pilot protein; PDBTitle: the solution structure of a domain from the neisseria2 meningitidis pilp pilot protein. 99 c2fb0A_ not modelled 34.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of conserved protein of unknown function from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution, possible3 oxidoreductase 100 d1zlqa1 not modelled 34.2 20 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 101 c2zkrq_ not modelled 33.8 31 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 102 c3t66A_ not modelled 33.5 13 PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans 103 d1x6oa1 not modelled 33.4 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 104 d1vgya2 not modelled 33.3 17 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 105 d1q40b_ not modelled 33.2 26 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 106 d1g7sa1 not modelled 33.1 5 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 107 d1c99a_ not modelled 32.8 39 Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C 108 c3c5oD_ not modelled 32.5 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:upf0311 protein rpa1785; PDBTitle: crystal structure of the conserved protein of unknown function rpa17852 from rhodopseudomonas palustris 109 c1l6nA_ not modelled 32.4 18 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein 110 d2plia1 not modelled 32.4 39 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 111 c2l66B_ not modelled 31.8 32 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 112 d1yeza1 not modelled 31.8 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 113 c2lc4A_ not modelled 31.8 28 PDB header:structural protein Chain: A: PDB Molecule:pilp protein; PDBTitle: solution structure of pilp from pseudomonas aeruginosa 114 c1s1iQ_ not modelled 31.4 31 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 115 d2hi6a1 not modelled 31.2 41 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:AF0055-like 116 d1ixda_ not modelled 31.2 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 117 d2if6a1 not modelled 31.0 21 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 118 d3d3ra1 not modelled 30.8 25 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 119 d2a7ya1 not modelled 30.0 19 Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Rv2302-like 120 c2a7yA_ not modelled 30.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359; PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis