Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	F	T	R	R	K	F	V	L	G	M	G	T	V	I	F	F	T	G	S	A	S	S	L	L	A	N	T	R	Q	E	K	E	V	R	Y	A	M	I	H	D	E	S	R	C	N	G	C	N	I	C	A	R	A	C	R	K	T	N
Secondary structure
SS confidence
Disorder		?	?	?	?													?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	V	P	A	Q	G	S	R	L	S	I	A	H	I	P	V	T	D	N	D	N	E	T	Q	Y	H	F	F	R	Q	S	C	Q	H	C	E	D	A	P	C	I	D	V	C	P	T	G	A	S	W	R	D	E	Q	G	I	V	R	V	E
Secondary structure
SS confidence
Disorder				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	S	Q	C	I	G	C	S	Y	C	I	G	A	C	P	Y	Q	V	R	Y	L	N	P	V	T	K	V	A	D	K	C	D	F	C	A	E	S	R	L	A	K	G	F	P	P	I	C	V	S	A	C	P	E	H	A	L	I	F	G	R
Secondary structure
SS confidence
Disorder																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Sequence		E	D	S	P	E	I	Q	A	W	L	Q	Q	N	K	Y	Y	Q	Y	Q	L	P	G	A	G	K	P	H	L	Y	R	R	F	G	Q	H	L	I	K	K	E	N	V
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?				?													?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ivf chain B Region: 34 - 221 Aligned: 187 Modelled: 188 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 1ti2 chain F Region: 35 - 211 Aligned: 175 Modelled: 177 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 2vpy chain B Region: 35 - 222 Aligned: 185 Modelled: 188 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1kqf chain B Region: 20 - 213 Aligned: 193 Modelled: 194 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1vlf chain N domain 2 Region: 35 - 220 Aligned: 181 Modelled: 186 Confidence: 100.0% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1kqf chain B domain 1 Region: 20 - 213 Aligned: 193 Modelled: 194 Confidence: 100.0% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1y5i chain B domain 1 Region: 35 - 215 Aligned: 180 Modelled: 181 Confidence: 100.0% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h0h chain B Region: 38 - 222 Aligned: 184 Modelled: 185 Confidence: 100.0% Identity: 23% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2zvs chain B Region: 117 - 192 Aligned: 72 Modelled: 76 Confidence: 99.4% Identity: 24% PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli Phyre2 PDB 2fug chain 9 domain 1 Region: 109 - 183 Aligned: 65 Modelled: 75 Confidence: 99.3% Identity: 35% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fug chain G Region: 109 - 183 Aligned: 65 Modelled: 75 Confidence: 99.3% Identity: 35% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 1xer chain A Region: 115 - 180 Aligned: 56 Modelled: 66 Confidence: 99.3% Identity: 36% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 1gth chain D Region: 105 - 184 Aligned: 70 Modelled: 80 Confidence: 99.3% Identity: 29% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 2fgo chain A Region: 116 - 192 Aligned: 72 Modelled: 77 Confidence: 99.3% Identity: 19% PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa Phyre2 PDB 1hfe chain L domain 2 Region: 105 - 179 Aligned: 65 Modelled: 75 Confidence: 99.2% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 3gyx chain J Region: 117 - 183 Aligned: 57 Modelled: 67 Confidence: 99.2% Identity: 30% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 1hfe chain L Region: 105 - 198 Aligned: 84 Modelled: 94 Confidence: 99.2% Identity: 25% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 1gx7 chain A Region: 116 - 198 Aligned: 73 Modelled: 83 Confidence: 99.2% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Phyre2 PDB 1blu chain A Region: 117 - 192 Aligned: 66 Modelled: 76 Confidence: 99.2% Identity: 21% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1bc6 chain A Region: 119 - 196 Aligned: 68 Modelled: 78 Confidence: 99.2% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 2pq4 chain B Region: 1 - 35 Aligned: 35 Modelled: 35 Confidence: 92.0% Identity: 17% PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide Phyre2 1 c2ivfB_ 2 c1ti2F_ 3 c2vpyB_ 4 c1kqfB_ 5 d1vlfn2 6 d1kqfb1 7 d1y5ib1 8 d1h0hb_ 9 c2zvsB_ 10 d2fug91 11 c2fugG_ 12 d1xera_ 13 c1gthD_ 14 c2fgoA_ 15 d1hfel2 16 c3gyxJ_ 17 c1hfeL_ 18 c1gx7A_ 19 d1blua_ 20 d1bc6a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 c2pq4B_ 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ivfB_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 2 c1ti2F_ 100.0 26 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 3 c2vpyB_ 100.0 38 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 4 c1kqfB_ 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 5 d1vlfn2 100.0 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 6 d1kqfb1 100.0 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 7 d1y5ib1 100.0 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 8 d1h0hb_ 100.0 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 c2zvsB_ 99.4 24 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 10 d2fug91 99.3 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 11 c2fugG_ 99.3 35 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 12 d1xera_ 99.3 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 13 c1gthD_ 99.3 29 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 14 c2fgoA_ 99.3 19 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 15 d1hfel2 99.2 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 16 c3gyxJ_ 99.2 30 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 17 c1hfeL_ 99.2 25 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 18 c1gx7A_ 99.2 26 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 19 d1blua_ 99.2 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 20 d1bc6a_ 99.2 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 21 d1rgva_ not modelled 99.2 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 22 d3c8ya3 not modelled 99.2 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 23 d7fd1a_ not modelled 99.2 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 24 d1gtea5 not modelled 99.2 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 d1jnrb_ not modelled 99.1 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 26 d1h98a_ not modelled 99.1 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 27 d1jb0c_ not modelled 99.1 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 28 c2v2kB_ not modelled 99.1 17 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 29 c2gmhA_ not modelled 99.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 30 c2c3yA_ not modelled 99.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 31 d2c42a5 not modelled 99.0 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 32 d2fdna_ not modelled 99.0 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 33 d1dura_ not modelled 99.0 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 34 d1fcaa_ not modelled 99.0 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 35 d3c7bb1 not modelled 98.9 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 36 d1clfa_ not modelled 98.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 37 d2fug34 not modelled 98.8 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 38 d1vjwa_ not modelled 98.8 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 39 d1iqza_ not modelled 98.8 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 40 d2gmha3 not modelled 98.7 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 41 c1dwlA_ not modelled 98.6 23 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 42 d1sj1a_ not modelled 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 43 c1c4cA_ not modelled 98.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 44 d1fxra_ not modelled 98.6 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 45 c3c7bE_ not modelled 98.5 24 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 46 c2v4jE_ not modelled 98.2 22 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 47 c2v4jA_ not modelled 98.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 48 c3c7bA_ not modelled 98.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 49 c3bk7A_ not modelled 98.0 26 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 50 c2fugC_ not modelled 98.0 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 51 d2bs2b1 not modelled 97.8 17 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 d1kf6b1 not modelled 97.6 27 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 d1nekb1 not modelled 97.4 17 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 54 c2bs2E_ not modelled 97.4 17 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 55 c1nekB_ not modelled 96.9 26 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 56 c2b76N_ not modelled 96.5 36 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 57 c2h89B_ not modelled 96.5 22 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 58 c3cf4A_ not modelled 96.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 59 d2v4jb1 not modelled 96.1 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 60 d2v4ja1 not modelled 93.2 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 d3c7ba1 not modelled 93.1 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 62 c2pq4B_ 92.0 17 PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide 63 c2vdcI_ not modelled 90.2 15 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 64 c2e76D_ not modelled 85.3 15 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 65 c1p84E_ not modelled 79.9 16 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 66 c2fynO_ not modelled 77.5 17 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 67 c2fyuE_ not modelled 71.6 12 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 68 d1fxda_ not modelled 69.1 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 69 c2htfA_ not modelled 61.9 38 PDB header:transferase Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: the solution structure of the brct domain from human2 polymerase reveals homology with the tdt brct domain 70 d1gtea1 not modelled 37.8 50 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 71 c1g8jC_ not modelled 21.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 72 d1djqa3 not modelled 17.5 40 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 73 c2eqpA_ not modelled 14.0 36 PDB header:transcription Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the stn_tnfrsf12a_tnfr domain of2 tumor necrosis factor receptor superfamily member 12a3 precursor 74 c2dtgE_ not modelled 9.0 23 PDB header:hormone receptor/immune system Chain: E: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (ir) ectodomain in complex with fab's 75 d2f6ma1 not modelled 9.0 18 Fold:Long alpha-hairpin Superfamily:Endosomal sorting complex assembly domain Family:VPS23 C-terminal domain 76 c2cazD_ not modelled 8.3 18 PDB header:protein transport Chain: D: PDB Molecule:suppressor protein stp22 of temperature- PDBTitle: escrt-i core 77 d2e74d2 not modelled 8.0 12 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 78 c1moxB_ not modelled 7.8 24 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha 79 c2kn0A_ not modelled 7.8 36 PDB header:apoptosis Chain: A: PDB Molecule:fn14; PDBTitle: solution nmr structure of xenopus fn14 80 d2adra2 not modelled 7.2 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 81 d1yuza2 not modelled 7.0 24 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 82 c3geiB_ not modelled 6.9 63 PDB header:hydrolase Chain: B: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp 83 d1dxga_ not modelled 6.7 23 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Desulforedoxin 84 c2hr7B_ not modelled 6.6 17 PDB header:transferase Chain: B: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (domains 1-3) 85 c2dunA_ not modelled 6.6 33 PDB header:transferase Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: solution structure of brct domain of dna polymerase mu 86 c1egpB_ not modelled 6.5 6 PDB header:proteinase inhibitor Chain: B: PDB Molecule:eglin-c; PDBTitle: proteinase inhibitor eglin c with hydrolysed reactive center 87 c1skzA_ not modelled 6.4 25 PDB header:serine protease inhibitor Chain: A: PDB Molecule:antistasin; PDBTitle: protease inhibitor 88 c1xzqA_ not modelled 5.3 50 PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf 89 c2a91A_ not modelled 5.3 31 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0