Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75936
DateThu Jan 5 12:16:10 GMT 2012
Unique Job ID71424cb9a475ab0a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3c12A_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
Confidence and coverage
Confidence:100.0% Coverage: 59%
136 residues ( 59% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
Secondary structure 
SS confidence 
Disorder  ???????????????????????????????
?
??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
Secondary structure 
SS confidence 
Disorder 
????????????????????????
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYN
Secondary structure 
SS confidence 
Disorder  ???
?
??????????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.
Sequence  VAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
Secondary structure 
SS confidence 
Disorder 
??????
???
????
?
??
?
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3c12 chain A

3D model

Region: 87 - 230
Aligned: 136
Modelled: 144
Confidence: 100.0%
Identity: 30%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly

Phyre2

PDB 3osv chain C

3D model

Region: 92 - 230
Aligned: 131
Modelled: 139
Confidence: 100.0%
Identity: 29%
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa

Phyre2

PDB 1xf1 chain A

3D model

Region: 119 - 199
Aligned: 81
Modelled: 81
Confidence: 96.5%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:c5a peptidase;
PDBTitle: structure of c5a peptidase- a key virulence factor from2 streptococcus

Phyre2

PDB 3d33 chain B

3D model

Region: 124 - 189
Aligned: 59
Modelled: 66
Confidence: 95.3%
Identity: 24%
PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution

Phyre2

PDB 2p9r chain A

3D model

Region: 100 - 189
Aligned: 85
Modelled: 90
Confidence: 93.2%
Identity: 18%
PDB header:signaling protein
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3

Phyre2

PDB 3isy chain A

3D model

Region: 119 - 184
Aligned: 59
Modelled: 66
Confidence: 91.6%
Identity: 15%
PDB header:protein binding
Chain: A: PDB Molecule:intracellular proteinase inhibitor;
PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution

Phyre2

PDB 3pay chain B

3D model

Region: 128 - 190
Aligned: 56
Modelled: 63
Confidence: 89.7%
Identity: 16%
PDB header:cell adhesion
Chain: B: PDB Molecule:putative adhesin;
PDBTitle: crystal structure of a putative adhesin (bacova_04077) from2 bacteroides ovatus at 2.50 a resolution

Phyre2

PDB 3gf8 chain A

3D model

Region: 128 - 190
Aligned: 55
Modelled: 63
Confidence: 89.2%
Identity: 25%
PDB header:carbohydrate binding protein
Chain: A: PDB Molecule:putative polysaccharide binding proteins (duf1812);
PDBTitle: crystal structure of putative polysaccharide binding proteins2 (duf1812) (np_809975.1) from bacteroides thetaiotaomicron vpi-5482 at3 2.20 a resolution

Phyre2

PDB 2c9q chain A domain 1

3D model

Region: 138 - 184
Aligned: 46
Modelled: 47
Confidence: 85.7%
Identity: 17%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: Copper resistance protein C (CopC, PcoC)

Phyre2

PDB 3sd2 chain A

3D model

Region: 124 - 184
Aligned: 52
Modelled: 61
Confidence: 85.5%
Identity: 23%
PDB header:unknown function
Chain: A: PDB Molecule:putative member of duf3244 protein family;
PDBTitle: crystal structure of a putative member of duf3244 protein family2 (bt_3571) from bacteroides thetaiotaomicron vpi-5482 at 1.40 a3 resolution

Phyre2

PDB 1ix2 chain A

3D model

Region: 123 - 184
Aligned: 61
Modelled: 62
Confidence: 83.6%
Identity: 20%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: Copper resistance protein C (CopC, PcoC)

Phyre2

PDB 3pe9 chain D

3D model

Region: 99 - 203
Aligned: 80
Modelled: 105
Confidence: 82.9%
Identity: 15%
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 2xwx chain B

3D model

Region: 119 - 203
Aligned: 80
Modelled: 85
Confidence: 82.1%
Identity: 15%
PDB header:chitin-binding protein
Chain: B: PDB Molecule:glcnac-binding protein a;
PDBTitle: vibrio cholerae colonization factor gbpa crystal structure

Phyre2

PDB 2pn5 chain A

3D model

Region: 99 - 188
Aligned: 86
Modelled: 90
Confidence: 81.2%
Identity: 19%
PDB header:immune system
Chain: A: PDB Molecule:thioester-containing protein i;
PDBTitle: crystal structure of tep1r

Phyre2

PDB 1nqj chain A

3D model

Region: 118 - 188
Aligned: 59
Modelled: 71
Confidence: 80.4%
Identity: 12%
Fold: CUB-like
Superfamily: Collagen-binding domain
Family: Collagen-binding domain

Phyre2

PDB 3cu7 chain A

3D model

Region: 99 - 197
Aligned: 93
Modelled: 99
Confidence: 79.7%
Identity: 9%
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: human complement component 5

Phyre2

PDB 3pdg chain A

3D model

Region: 106 - 203
Aligned: 85
Modelled: 98
Confidence: 77.8%
Identity: 15%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3irp chain X

3D model

Region: 129 - 185
Aligned: 46
Modelled: 55
Confidence: 76.9%
Identity: 30%
PDB header:cell adhesion
Chain: X: PDB Molecule:uro-adherence factor a;
PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution

Phyre2

PDB 3pe9 chain B

3D model

Region: 136 - 203
Aligned: 54
Modelled: 68
Confidence: 75.6%
Identity: 13%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3jqx chain A

3D model

Region: 118 - 190
Aligned: 63
Modelled: 73
Confidence: 74.0%
Identity: 17%
PDB header:cell adhesion
Chain: A: PDB Molecule:colh protein;
PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium

Phyre2
1
c3c12A_
2
c3osvC_
3
c1xf1A_
4
c3d33B_
5
c2p9rA_
6
c3isyA_
7
c3payB_
8
c3gf8A_
9
d2c9qa1
10
c3sd2A_
11
d1ix2a_
12
c3pe9D_
13
c2xwxB_
14
c2pn5A_
15
d1nqja_
16
c3cu7A_
17
c3pdgA_
18
c3irpX_
19
c3pe9B_
20
c3jqxA_
21
22
23
24
25
26
27
28
29
30
31
32
33
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c12A_
100.0 30 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
2c3osvC_
100.0 29 PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
3c1xf1A_
96.5 27 PDB header:hydrolase
Chain: A: PDB Molecule:c5a peptidase;
PDBTitle: structure of c5a peptidase- a key virulence factor from2 streptococcus
4c3d33B_
95.3 24 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
5c2p9rA_
93.2 18 PDB header:signaling protein
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3
6c3isyA_
91.6 15 PDB header:protein binding
Chain: A: PDB Molecule:intracellular proteinase inhibitor;
PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution
7c3payB_
89.7 16 PDB header:cell adhesion
Chain: B: PDB Molecule:putative adhesin;
PDBTitle: crystal structure of a putative adhesin (bacova_04077) from2 bacteroides ovatus at 2.50 a resolution
8c3gf8A_
89.2 25 PDB header:carbohydrate binding protein
Chain: A: PDB Molecule:putative polysaccharide binding proteins (duf1812);
PDBTitle: crystal structure of putative polysaccharide binding proteins2 (duf1812) (np_809975.1) from bacteroides thetaiotaomicron vpi-5482 at3 2.20 a resolution
9d2c9qa1
85.7 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
10c3sd2A_
85.5 23 PDB header:unknown function
Chain: A: PDB Molecule:putative member of duf3244 protein family;
PDBTitle: crystal structure of a putative member of duf3244 protein family2 (bt_3571) from bacteroides thetaiotaomicron vpi-5482 at 1.40 a3 resolution
11d1ix2a_
83.6 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
12c3pe9D_
82.9 15 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
13c2xwxB_
82.1 15 PDB header:chitin-binding protein
Chain: B: PDB Molecule:glcnac-binding protein a;
PDBTitle: vibrio cholerae colonization factor gbpa crystal structure
14c2pn5A_
81.2 19 PDB header:immune system
Chain: A: PDB Molecule:thioester-containing protein i;
PDBTitle: crystal structure of tep1r
15d1nqja_
80.4 12 Fold:CUB-like
Superfamily:Collagen-binding domain
Family:Collagen-binding domain
16c3cu7A_
79.7 9 PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: human complement component 5
17c3pdgA_
77.8 15 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
18c3irpX_
76.9 30 PDB header:cell adhesion
Chain: X: PDB Molecule:uro-adherence factor a;
PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution
19c3pe9B_
75.6 13 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
20c3jqxA_
74.0 17 PDB header:cell adhesion
Chain: A: PDB Molecule:colh protein;
PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium
21d1cwva3
not modelled 68.5 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
22d2d7na1
not modelled 66.2 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
23c2k7pA_
not modelled 65.3 12 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: filamin a ig-like domains 16-17
24c3pe9A_
not modelled 59.3 23 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
25d1cwva1
not modelled 53.3 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
26c3mn8A_
not modelled 49.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
27c3ohnA_
not modelled 46.3 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
28c1uwyA_
not modelled 46.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
29d2d7pa1
not modelled 44.1 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
30c2nsmA_
not modelled 43.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
31c2b39B_
not modelled 39.7 14 PDB header:immune system
Chain: B: PDB Molecule:c3;
PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution
32d1zdxa1
not modelled 39.4 43 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
33d2q4ma1
not modelled 38.1 20 Fold:Tubby C-terminal domain-like
Superfamily:Tubby C-terminal domain-like
Family:At5g01750-like
34c1zxuA_
not modelled 38.1 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:at5g01750 protein;
PDBTitle: x-ray structure of protein from arabidopsis thaliana2 at5g01750
35d1nqjb_
not modelled 37.2 13 Fold:CUB-like
Superfamily:Collagen-binding domain
Family:Collagen-binding domain
36d2e9ia1
not modelled 37.2 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
37c2x5pA_
not modelled 37.0 18 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
38c2k7qA_
not modelled 36.9 14 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: filamin a ig-like domains 18-19
39c3mkqA_
not modelled 35.4 12 PDB header:transport protein
Chain: A: PDB Molecule:coatomer beta'-subunit;
PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
40d1zdva1
not modelled 35.0 43 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
41d2diaa1
not modelled 33.5 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
42c2kutA_
not modelled 32.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of gmr58a from geobacter metallireducens.2 northeast structural genomics consortium target gmr58a
43d1bf2a1
not modelled 31.7 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
44c3pe9C_
not modelled 30.8 11 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
45c2l0dA_
not modelled 30.1 18 PDB header:cell adhesion
Chain: A: PDB Molecule:cell surface protein;
PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a
46c3dsmA_
not modelled 29.7 7 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bacuni_02894;
PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d.
47d1uwya1
not modelled 28.9 14 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
48d1nkga1
not modelled 27.8 20 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
49d2hc5a1
not modelled 27.5 17 Fold:FlaG-like
Superfamily:FlaG-like
Family:FlaG-like
50d1clca2
not modelled 27.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
51c3kptA_
not modelled 27.1 15 PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesion protein;
PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus
52c2jojA_
not modelled 26.8 25 PDB header:cell cycle
Chain: A: PDB Molecule:centrin protein;
PDBTitle: nmr solution structure of n-terminal domain of euplotes2 octocarinatus centrin
53d1l0qa1
not modelled 26.8 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
54c2e7mA_
not modelled 26.3 14 PDB header:structural protein
Chain: A: PDB Molecule:protein kiaa0319;
PDBTitle: solution structure of the pkd domain (329-428) from human2 kiaa0319
55c1h8lA_
not modelled 26.2 20 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
56d2dj4a1
not modelled 25.8 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
57d2d7ma1
not modelled 25.3 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
58d1v05a_
not modelled 25.2 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
59d2vzsa3
not modelled 24.5 9 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
60c2pz4A_
not modelled 23.9 19 PDB header:cell adhesion
Chain: A: PDB Molecule:protein gbs052;
PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae
61c2kzwA_
not modelled 23.5 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of q8psa4 from methanosarcina mazei, northeast2 structural genomics consortium target mar143a
62d1edqa1
not modelled 23.1 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
63d1b77a2
not modelled 22.1 23 Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
64c3hrzA_
not modelled 21.8 12 PDB header:immune system
Chain: A: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b
65d2dmba1
not modelled 20.3 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
66d2dmca1
not modelled 20.3 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
67d2ag4a1
not modelled 19.9 27 Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
68d2di8a1
not modelled 19.6 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
69c2qkiA_
not modelled 19.3 17 PDB header:immune system/hydrolase inhibitor
Chain: A: PDB Molecule:complement c3;
PDBTitle: human c3c in complex with the inhibitor compstatin
70c3pddA_
not modelled 19.3 18 PDB header:unknown function
Chain: A: PDB Molecule:glycoside hydrolase, family 9;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
71d1cwva2
not modelled 17.6 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
72c3b9eA_
not modelled 17.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
73d2j3sa2
not modelled 16.6 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
74d2w0pa1
not modelled 16.4 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
75c3ottB_
not modelled 16.1 10 PDB header:transcription
Chain: B: PDB Molecule:two-component system sensor histidine kinase;
PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron
76d1l0qa2
not modelled 15.9 16 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:YVTN repeat
77d1h8la1
not modelled 15.7 20 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
78d2hq2a1
not modelled 15.6 17 Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:HemS/ChuS-like
79d1uwfa1
not modelled 15.0 17 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
80d1wlga_
not modelled 14.4 13 Fold:Flagellar hook protein flgE
Superfamily:Flagellar hook protein flgE
Family:Flagellar hook protein flgE
81c3cnkB_
not modelled 14.1 17 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the dimerization domain of human2 filamin a
82c3rfzB_
not modelled 13.9 15 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
83c1qfhB_
not modelled 13.8 20 PDB header:actin binding protein
Chain: B: PDB Molecule:protein (gelation factor);
PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6
84c3iswA_
not modelled 13.0 16 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
85c1ponB_
not modelled 12.9 13 PDB header:calcium-binding protein
Chain: B: PDB Molecule:troponin c;
PDBTitle: site iii-site iv troponin c heterodimer, nmr
86c3rghA_
not modelled 12.6 21 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
87d1ccda_
not modelled 12.2 11 Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
88c2yh5A_
not modelled 12.0 11 PDB header:lipid binding protein
Chain: A: PDB Molecule:dapx protein;
PDBTitle: structure of the c-terminal domain of bamc
89d1qfha2
not modelled 11.9 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
90d1pzsa_
not modelled 11.7 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
91c1pzsA_
not modelled 11.7 25 PDB header:oxidoreductase, metal binding protein
Chain: A: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: crystal structure of a cu-zn superoxide dismutase from mycobacterium2 tuberculosis at 1.63 resolution
92d3bwud1
not modelled 11.5 40 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
93d1wpga2
not modelled 11.4 31 Fold:HAD-like
Superfamily:HAD-like
Family:Meta-cation ATPase, catalytic domain P
94d2cwza1
not modelled 11.3 20 Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:TTHA0967-like
95d1wgoa_
not modelled 11.1 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
96c2qt7B_
not modelled 10.9 25 PDB header:hydrolase
Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like
PDBTitle: crystallographic structure of the mature ectodomain of the2 human receptor-type protein-tyrosine phosphatase ia-2 at3 1.30 angstroms
97c3gzkA_
not modelled 10.9 10 PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structure of a. acidocaldarius cellulase cela
98c2go2A_
not modelled 10.9 25 PDB header:protein binding
Chain: A: PDB Molecule:kunitz-type serine protease inhibitor bbki;
PDBTitle: crystal structure of bbki, a kunitz-type kallikrein inhibitor
99c2kzxA_
not modelled 10.7 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0