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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1xf1A_

Fold library idPDB HeaderMoleculeTitle
c1xf1A_PDB header: hydrolaseChain: A: PDB Molecule: c5a peptidase;PDBTitle: structure of c5a peptidase- a key virulence factor from2 streptococcus


Added to library: Tue Mar 16 13:12:31 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKV
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Known secondary structure (DSSP)

TT


S
TT
S

TT




S

S


SS

TTT



B

SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence AYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAXPEAQLLLXRVEIVNGLADYARNYAQA
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Known secondary structure (DSSP)
S


S



SSTTTTSS







S
S

TTTT
TTS



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence IRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGV
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Known secondary structure (DSSP) TT


SS


TT



TT


S

BTT
TTS

BTT



B
 .........220.........230.........240.........250.........260.........270.........280
Sequence VGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVK
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Known secondary structure (DSSP)

S
TTT

SB
S
TTS
S


TT


TTS
STTTTTT
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence GKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLKDNPQKTIT
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Known secondary structure (DSSP) TS

SS
TT
S
SSTT





STT



SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FNATPKVLPTASGTKLSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSXSAPLVAGIXGLL
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Known secondary structure (DSSP)
SS

SS
SB

TTS


B
TTS
BS




SSS
SSS
S
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATXYVTDKDNTSS
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Known secondary structure (DSSP) SSSSSSB

GGGT

TT
B


SSSSS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTV
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Known secondary structure (DSSP)

S
SSS
TT



TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence PIDASRFSKDLLAQXKNGYFLEGFVRFKQDPTKEELXSIPYIGFRGDFGNLSALEKPIYDSKDGSSYYHE
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Known secondary structure (DSSP)
STT
SSTTS


S
GGGS

B


GGG
SSS

SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence ANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIEDIESSEITETIFAGTFAKQDDDS
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Known secondary structure (DSSP)

TT
TTB


STTS

TTSS
SS

T
S
STTSS




TT
SS

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence HYYIHRHANGKPYAAISPNGDGNRDYVQFQGTFLRNAKNLVAEVLDKEGNVVWTSEVTEQVVKNYNNDLA
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Known secondary structure (DSSP)

B
TTS
B


SSSSSS

B
BSS

TTS









BTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence STLGSTRFEKTRWDGKDKDGKVVANGTYTYRVRYTPISSGAKEQHTDFDVIVDNTTPEVATSATFSTEDR
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Known secondary structure (DSSP) TB
SS
GGG
B
SB
TTS
B

SSSTT







B

S

TTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence RLTLASKPKTSQPVYRERIAYTYXDEDLPTTEYISPNEDGTFTLPEEAETXEGATVPLKXSDFTYVVEDX
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Known secondary structure (DSSP)
S

B
SS
SSS



TTS


S
TTS


GGG
T
 .........920......
Sequence AGNITYTPVTKLLEGH
Predicted secondary structure





SS confidence















Known secondary structure (DSSP) T

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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