Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	I	D	I	F	Q	S	L	K	N	C	V	F	D	L	Q	R	A	D	V	Q	N	Y	Q	Q	P	L	K	Q	L	A	R	L	L	N	S	E	N	L	Q	S	V	N	A	H	L	T	R	N	V	E	L	D	T	F	L	A	R	S
Secondary structure
SS confidence
Disorder		?	?	?															?	?	?	?	?	?	?	?	?									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	D	T	E	S	S	M	A	G	S	A	V	L	Q	W	P	D	E	P	A	D	I	L	G	L	K	L	L	L	I	E	K	M	A	D	D	N	N	F	S	F	N	F	C	H	T	F	F	Y	D	R	N	I	I	E	S	I	R	K	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	S	S	L	V	A	P	F	V	R	D	Y	Q	L	Y	V	E	N	Q	H	D	P	E	P	A	V	F	R	P	V	S	R	K	I	F	I	V	H	G	H	D	N	D	A	L	Q	S	V	A	R	F	I	S	R	I	G	L	E	E	I
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	L	S	E	R	P	D	G	S	R	T	I	I	E	K	F	E	A	E	S	G	D	V	S	F	A	I	V	L	M	T	P	D	D	S	G	S	A	L	A	S	E	S	T	R	L	R	A	R	Q	N	V	L	Y	E	L	G	Y	F	A
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?																													?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Sequence		G	K	L	G	R	G	K	V	L	V	L	R	K	G	D	I	E	I	P	S	D	L	A	G	V	L	Y	T	E	L	D	E	H	G	G	W	K	R	K	L	L	S	E	L	A	Y	A	G	V	P	F	D	K	D	K	A	L	S	A
Secondary structure
SS confidence
Disorder																																																										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3h16 chain A Region: 154 - 285 Aligned: 120 Modelled: 132 Confidence: 97.4% Identity: 18% PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans Phyre2 PDB 1fyv chain A Region: 154 - 287 Aligned: 122 Modelled: 134 Confidence: 97.2% Identity: 16% Fold: Flavodoxin-like Superfamily: Toll/Interleukin receptor TIR domain Family: Toll/Interleukin receptor TIR domain Phyre2 PDB 2y92 chain A Region: 154 - 284 Aligned: 109 Modelled: 131 Confidence: 97.0% Identity: 17% PDB header:immune system Chain: A: PDB Molecule:toll/interleukin-1 receptor domain-containing adapter PDBTitle: crystal structure of mal adaptor protein Phyre2 PDB 2z5v chain A Region: 150 - 290 Aligned: 129 Modelled: 141 Confidence: 97.0% Identity: 12% PDB header:immune system Chain: A: PDB Molecule:myeloid differentiation primary response protein PDBTitle: solution structure of the tir domain of human myd88 Phyre2 PDB 1t3g chain B Region: 154 - 281 Aligned: 117 Modelled: 128 Confidence: 95.9% Identity: 15% PDB header:membrane protein Chain: B: PDB Molecule:x-linked interleukin-1 receptor accessory PDBTitle: crystal structure of the toll/interleukin-1 receptor (tir)2 domain of human il-1rapl Phyre2 PDB 1fyx chain A Region: 154 - 287 Aligned: 124 Modelled: 134 Confidence: 95.0% Identity: 10% Fold: Flavodoxin-like Superfamily: Toll/Interleukin receptor TIR domain Family: Toll/Interleukin receptor TIR domain Phyre2 PDB 3ozi chain B Region: 153 - 213 Aligned: 61 Modelled: 61 Confidence: 94.2% Identity: 5% PDB header:plant protein Chain: B: PDB Molecule:l6tr; PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6 Phyre2 PDB 2f62 chain A domain 1 Region: 163 - 271 Aligned: 91 Modelled: 93 Confidence: 84.9% Identity: 16% Fold: Flavodoxin-like Superfamily: N-(deoxy)ribosyltransferase-like Family: N-deoxyribosyltransferase Phyre2 PDB 1m1n chain B Region: 70 - 209 Aligned: 129 Modelled: 140 Confidence: 84.3% Identity: 19% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 2khz chain B Region: 156 - 290 Aligned: 119 Modelled: 120 Confidence: 82.7% Identity: 24% PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl Phyre2 PDB 2i34 chain B Region: 153 - 242 Aligned: 86 Modelled: 90 Confidence: 77.0% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:acid phosphatase; PDBTitle: the crystal structure of class c acid phosphatase from bacillus2 anthracis with tungstate bound Phyre2 PDB 1qh8 chain B Region: 71 - 209 Aligned: 128 Modelled: 139 Confidence: 76.0% Identity: 13% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 1mio chain B Region: 89 - 209 Aligned: 105 Modelled: 106 Confidence: 60.4% Identity: 18% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 1wdk chain A domain 3 Region: 155 - 186 Aligned: 32 Modelled: 32 Confidence: 50.4% Identity: 16% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: 6-phosphogluconate dehydrogenase-like, N-terminal domain Phyre2 PDB 3pdi chain B Region: 71 - 209 Aligned: 129 Modelled: 130 Confidence: 47.5% Identity: 12% PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen Phyre2 PDB 2i7x chain A domain 1 Region: 147 - 192 Aligned: 41 Modelled: 46 Confidence: 46.3% Identity: 17% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: beta-CASP RNA-metabolising hydrolases Phyre2 PDB 2i7x chain A Region: 147 - 192 Aligned: 41 Modelled: 46 Confidence: 46.3% Identity: 17% PDB header:rna binding protein, protein binding Chain: A: PDB Molecule:protein cft2; PDBTitle: structure of yeast cpsf-100 (ydh1p) Phyre2 PDB 3pdi chain G Region: 71 - 209 Aligned: 130 Modelled: 134 Confidence: 45.7% Identity: 7% PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen Phyre2 PDB 3kbq chain A Region: 168 - 217 Aligned: 48 Modelled: 50 Confidence: 43.4% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum Phyre2 PDB 2xr1 chain B Region: 148 - 192 Aligned: 41 Modelled: 45 Confidence: 43.3% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Phyre2 1 c3h16A_ 2 d1fyva_ 3 c2y92A_ 4 c2z5vA_ 5 c1t3gB_ 6 d1fyxa_ 7 c3oziB_ 8 d2f62a1 9 d1m1nb_ 10 c2khzB_ 11 c2i34B_ 12 d1qh8b_ 13 d1miob_ 14 d1wdka3 15 c3pdiB_ 16 d2i7xa1 17 c2i7xA_ 18 c3pdiG_ 19 c3kbqA_ 20 c2xr1B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3h16A_ 97.4 18 PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans 2 d1fyva_ 97.2 16 Fold:Flavodoxin-like Superfamily:Toll/Interleukin receptor TIR domain Family:Toll/Interleukin receptor TIR domain 3 c2y92A_ 97.0 17 PDB header:immune system Chain: A: PDB Molecule:toll/interleukin-1 receptor domain-containing adapter PDBTitle: crystal structure of mal adaptor protein 4 c2z5vA_ 97.0 12 PDB header:immune system Chain: A: PDB Molecule:myeloid differentiation primary response protein PDBTitle: solution structure of the tir domain of human myd88 5 c1t3gB_ 95.9 15 PDB header:membrane protein Chain: B: PDB Molecule:x-linked interleukin-1 receptor accessory PDBTitle: crystal structure of the toll/interleukin-1 receptor (tir)2 domain of human il-1rapl 6 d1fyxa_ 95.0 10 Fold:Flavodoxin-like Superfamily:Toll/Interleukin receptor TIR domain Family:Toll/Interleukin receptor TIR domain 7 c3oziB_ 94.2 5 PDB header:plant protein Chain: B: PDB Molecule:l6tr; PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6 8 d2f62a1 84.9 16 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 9 d1m1nb_ 84.3 19 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 10 c2khzB_ 82.7 24 PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl 11 c2i34B_ 77.0 15 PDB header:hydrolase Chain: B: PDB Molecule:acid phosphatase; PDBTitle: the crystal structure of class c acid phosphatase from bacillus2 anthracis with tungstate bound 12 d1qh8b_ 76.0 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 13 d1miob_ 60.4 18 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 14 d1wdka3 50.4 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 15 c3pdiB_ 47.5 12 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 16 d2i7xa1 46.3 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 17 c2i7xA_ 46.3 17 PDB header:rna binding protein, protein binding Chain: A: PDB Molecule:protein cft2; PDBTitle: structure of yeast cpsf-100 (ydh1p) 18 c3pdiG_ 45.7 7 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 19 c3kbqA_ 43.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 20 c2xr1B_ 43.3 15 PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei 21 c3jrnA_ not modelled 39.2 13 PDB header:plant protein Chain: A: PDB Molecule:at1g72930 protein; PDBTitle: crystal structure of tir domain from arabidopsis thaliana 22 d2d81a1 not modelled 39.2 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PHB depolymerase-like 23 c2ycbA_ not modelled 38.7 22 PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus 24 d1jq5a_ not modelled 36.8 14 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 25 c3sirD_ not modelled 34.6 20 PDB header:hydrolase Chain: D: PDB Molecule:caspase; PDBTitle: crystal structure of drice 26 c3ox4D_ not modelled 33.9 15 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor 27 d2dkfa1 not modelled 33.6 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 28 c3et4A_ not modelled 32.5 20 PDB header:hydrolase Chain: A: PDB Molecule:outer membrane protein p4, nadp phosphatase; PDBTitle: structure of recombinant haemophilus influenzae e(p4) acid phosphatase 29 c2xr1A_ not modelled 31.9 15 PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei 30 d1ycga1 not modelled 30.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 31 d2i52a1 not modelled 30.6 27 Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like 32 d2ieca1 not modelled 30.0 27 Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like 33 c2ogfD_ not modelled 29.5 33 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0408; PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372 34 d2obba1 not modelled 27.3 11 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 35 d1u0sy_ not modelled 26.1 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 36 c3pctA_ not modelled 25.3 15 PDB header:hydrolase Chain: A: PDB Molecule:class c acid phosphatase; PDBTitle: structure of the class c acid phosphatase from pasteurella multocida 37 c2ia5C_ not modelled 23.6 21 PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium. 38 d1ltqa1 not modelled 23.3 21 Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase 39 d2b82a1 not modelled 22.4 19 Fold:HAD-like Superfamily:HAD-like Family:Class B acid phosphatase, AphA 40 c1tjnA_ not modelled 22.3 18 PDB header:lyase Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase; PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus 41 d1tjna_ not modelled 22.3 18 Fold:Chelatase-like Superfamily:Chelatase Family:CbiX-like 42 c3ehdA_ not modelled 21.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of conserved protein from enterococcus faecalis v583 43 d1uxoa_ not modelled 21.1 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:YdeN-like 44 c3af5A_ not modelled 20.9 27 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii 45 c2ofhX_ not modelled 20.0 17 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 46 c2xdqB_ not modelled 19.6 10 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 47 c2kbzA_ not modelled 18.9 25 PDB header:viral protein Chain: A: PDB Molecule:15 protein (bacteriophage spp1 complete PDBTitle: nmr structure of protein gp15 of bacteriophage spp1 48 d1f8ya_ not modelled 17.1 21 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 49 d1vh3a_ not modelled 17.0 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 50 c3bfjK_ not modelled 17.0 19 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 51 c3lyhB_ not modelled 16.8 11 PDB header:lyase Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein; PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution 52 d2d9ia1 not modelled 16.3 5 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 53 d1vlja_ not modelled 15.9 17 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 54 d1kija1 not modelled 15.7 8 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 55 d2i76a2 not modelled 15.6 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 56 d1xi8a3 not modelled 15.4 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 57 d1ssqa_ not modelled 15.4 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 58 c1htjF_ not modelled 15.3 22 PDB header:signaling protein Chain: F: PDB Molecule:kiaa0380; PDBTitle: structure of the rgs-like domain from pdz-rhogef 59 d1htjf_ not modelled 15.3 22 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 60 d2fcja1 not modelled 15.3 20 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 61 c2v0xB_ not modelled 15.2 19 PDB header:cell cycle Chain: B: PDB Molecule:lamina-associated polypeptide 2 isoforms PDBTitle: the dimerization domain of lap2alpha 62 c2l3mA_ not modelled 14.8 10 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 63 c3nohA_ not modelled 14.4 29 PDB header:peptide binding protein Chain: A: PDB Molecule:putative peptide binding protein; PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution 64 d2cpqa1 not modelled 14.3 35 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 65 d2hk6a1 not modelled 14.1 14 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 66 c1wqaB_ not modelled 13.7 13 PDB header:isomerase Chain: B: PDB Molecule:phospho-sugar mutase; PDBTitle: crystal structure of pyrococcus horikoshii2 phosphomannomutase/phosphoglucomutase complexed with mg2+ 67 c3u0vA_ not modelled 13.7 11 PDB header:hydrolase Chain: A: PDB Molecule:lysophospholipase-like protein 1; PDBTitle: crystal structure analysis of human lyplal1 68 d1q8la_ not modelled 13.3 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 69 d2hiya1 not modelled 13.2 6 Fold:SP0830-like Superfamily:SP0830-like Family:SP0830-like 70 c2k29A_ not modelled 13.1 11 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 71 c2rafC_ not modelled 13.1 22 PDB header:oxidoreductase Chain: C: PDB Molecule:putative dinucleotide-binding oxidoreductase; PDBTitle: crystal structure of putative dinucleotide-binding2 oxidoreductase (np_786167.1) from lactobacillus plantarum3 at 1.60 a resolution 72 d1e5da1 not modelled 13.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 73 c3gx1A_ not modelled 12.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1832 protein; PDBTitle: crystal structure of a domain of lin1832 from listeria innocua 74 c3nhzA_ not modelled 12.8 17 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 75 d1s6ua_ not modelled 12.6 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 76 d1cvra1 not modelled 12.6 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Gingipain R (RgpB), C-terminal domain 77 c2j48A_ not modelled 12.4 14 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 78 c3cf4A_ not modelled 12.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 79 d1afia_ not modelled 12.3 6 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 80 c3clhA_ not modelled 12.2 7 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori 81 c2vq3B_ not modelled 12.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:metalloreductase steap3; PDBTitle: crystal structure of the membrane proximal oxidoreductase2 domain of human steap3, the dominant ferric reductase of3 the erythroid transferrin cycle 82 d1mioa_ not modelled 12.0 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 83 d1kvja_ not modelled 11.9 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 84 d1l8qa2 not modelled 11.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 85 c3okfA_ not modelled 11.4 17 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 86 c2r98A_ not modelled 11.3 16 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 87 c3trdA_ not modelled 11.2 14 PDB header:hydrolase Chain: A: PDB Molecule:alpha/beta hydrolase; PDBTitle: structure of an alpha-beta serine hydrolase homologue from coxiella2 burnetii 88 d1p6ta1 not modelled 11.2 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 89 d1bxca_ not modelled 11.2 15 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 90 c2yvqA_ not modelled 11.1 15 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 91 d1p9oa_ not modelled 11.0 19 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 92 d1zesa1 not modelled 10.9 18 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 93 d1wu2a3 not modelled 10.7 18 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 94 d1w25a1 not modelled 10.4 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 95 c3qd7X_ not modelled 10.3 25 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 96 d2auna2 not modelled 10.2 10 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 97 c2ldiA_ not modelled 10.2 17 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 98 d1qh8a_ not modelled 10.1 9 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 99 d1mb3a_ not modelled 10.0 18 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0