Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	V	L	L	R	P	V	L	V	P	E	L	G	L	V	V	L	K	P	G	R	E	S	I	Q	I	F	H	N	P	R	V	L	V	E	P	E	P	K	S	M	R	N	L	P	S	G	V	V	P	A	V	R	Q	P	L	A	E	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																						?	?	?	?							?	?				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	T	L	L	P	F	F	S	N	E	R	V	I	R	A	A	G	G	V	G	A	L	S	D	W	L	L	R	H	V	T	S	C	Q	W	P	N	G	D	Y	H	H	T	E	T	V	I	H	R	Y	G	T	G	A	M	V	L	C	W	H
Secondary structure
SS confidence
Disorder																																					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		C	D	N	Q	L	R	D	Q	T	S	E	S	L	E	L	L	A	Q	Q	N	L	T	A	W	V	I	D	V	I	R	H	A	I	S	G	T	Q	E	R	E	L	S	L	A	E	L	S	W	W	A	V	C	N	Q	V	V	D	A	L	P
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?																								?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	A	V	S	R	R	S	L	G	L	P	A	E	K	I	C	S	V	Y	R	E	S	D	I	V	P	G	E	L	T	A	T	S	I	L	K	Q	R	T	K	N	L	A	P	L	P	Y	A	H	Q	Q	Q	K	S	P	Q	E	K	T	V
Secondary structure
SS confidence
Disorder										?	?	?		?	?	?	?	?	?	?	?	?					?				?	?	?							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	S	I	T	V	D	P	E	S	P	E	S	F	M	K	L	P	K	R	R	R	W	V	K	E	K	Y	T	R	W	V	K	T	Q	P	C	A	C	C	G	M	P	A	D	D	P	H	H	L	I	G	H	G	Q	G	G	M	G	T	K
Secondary structure
SS confidence
Disorder			?	?		?					?					?	?	?	?	?	?	?	?		?																												?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Sequence		A	H	D	L	F	V	L	P	L	C	R	K	H	H	N	E	L	H	T	D	T	V	A	F	E	D	K	Y	G	S	Q	L	E	L	I	F	R	F	I	D	R	A	L	A	I	G	V	L	A
Secondary structure
SS confidence
Disorder		?																		?	?																								?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qgp chain A Region: 256 - 327 Aligned: 69 Modelled: 72 Confidence: 88.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. Phyre2 PDB 3plw chain A Region: 263 - 315 Aligned: 52 Modelled: 53 Confidence: 64.7% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:recombination enhancement function protein; PDBTitle: ref protein from p1 bacteriophage Phyre2 PDB 3dzu chain D Region: 273 - 290 Aligned: 18 Modelled: 18 Confidence: 63.0% Identity: 28% PDB header:transcription/dna Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide Phyre2 PDB 3g27 chain A Region: 274 - 348 Aligned: 66 Modelled: 75 Confidence: 45.6% Identity: 27% PDB header:protein binding Chain: A: PDB Molecule:82 prophage-derived uncharacterized protein ybco; PDBTitle: structure of a putative bacteriophage protein from escherichia coli2 str. k-12 substr. mg1655 Phyre2 PDB 3alr chain A Region: 272 - 289 Aligned: 18 Modelled: 18 Confidence: 42.8% Identity: 22% PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos Phyre2 PDB 1dsz chain A Region: 275 - 290 Aligned: 16 Modelled: 16 Confidence: 39.0% Identity: 25% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1r4r chain A Region: 274 - 290 Aligned: 17 Modelled: 17 Confidence: 38.0% Identity: 29% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1lat chain A Region: 274 - 288 Aligned: 15 Modelled: 15 Confidence: 37.8% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 2o2k chain A Region: 33 - 166 Aligned: 108 Modelled: 108 Confidence: 36.5% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n Phyre2 PDB 1hra chain A Region: 274 - 288 Aligned: 15 Modelled: 15 Confidence: 36.4% Identity: 27% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1glu chain A Region: 273 - 288 Aligned: 16 Modelled: 16 Confidence: 36.2% Identity: 31% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1hcq chain A Region: 273 - 290 Aligned: 18 Modelled: 18 Confidence: 35.4% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1xx6 chain B Region: 276 - 314 Aligned: 38 Modelled: 38 Confidence: 34.8% Identity: 29% PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26. Phyre2 PDB 2b8t chain A domain 2 Region: 276 - 314 Aligned: 39 Modelled: 39 Confidence: 31.1% Identity: 26% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Type II thymidine kinase zinc finger Phyre2 PDB 1r0o chain A Region: 274 - 288 Aligned: 15 Modelled: 15 Confidence: 30.3% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1w4r chain C Region: 276 - 316 Aligned: 35 Modelled: 40 Confidence: 29.4% Identity: 17% PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp Phyre2 PDB 3ds8 chain A Region: 265 - 297 Aligned: 33 Modelled: 33 Confidence: 29.2% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua Phyre2 PDB 2nll chain B Region: 274 - 290 Aligned: 17 Modelled: 17 Confidence: 28.7% Identity: 29% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1ji3 chain A Region: 282 - 296 Aligned: 15 Modelled: 15 Confidence: 28.4% Identity: 40% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: Bacterial lipase Phyre2 PDB 1ei9 chain A Region: 265 - 296 Aligned: 26 Modelled: 32 Confidence: 27.7% Identity: 19% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: Thioesterases Phyre2 1 c2qgpA_ 2 c3plwA_ 3 c3dzuD_ 4 c3g27A_ 5 c3alrA_ 6 d1dsza_ 7 d1r4ra_ 8 d1lata_ 9 c2o2kA_ 10 d1hraa_ 11 d1glua_ 12 d1hcqa_ 13 c1xx6B_ 14 d2b8ta2 15 d1r0oa_ 16 c1w4rC_ 17 c3ds8A_ 18 d2nllb_ 19 d1ji3a_ 20 d1ei9a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qgpA_ 88.0 23 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 2 c3plwA_ 64.7 27 PDB header:hydrolase Chain: A: PDB Molecule:recombination enhancement function protein; PDBTitle: ref protein from p1 bacteriophage 3 c3dzuD_ 63.0 28 PDB header:transcription/dna Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide 4 c3g27A_ 45.6 27 PDB header:protein binding Chain: A: PDB Molecule:82 prophage-derived uncharacterized protein ybco; PDBTitle: structure of a putative bacteriophage protein from escherichia coli2 str. k-12 substr. mg1655 5 c3alrA_ 42.8 22 PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos 6 d1dsza_ 39.0 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 7 d1r4ra_ 38.0 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 8 d1lata_ 37.8 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 9 c2o2kA_ 36.5 16 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 10 d1hraa_ 36.4 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 11 d1glua_ 36.2 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 12 d1hcqa_ 35.4 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 13 c1xx6B_ 34.8 29 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26. 14 d2b8ta2 31.1 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 15 d1r0oa_ 30.3 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 16 c1w4rC_ 29.4 17 PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp 17 c3ds8A_ 29.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 18 d2nllb_ 28.7 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 19 d1ji3a_ 28.4 40 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 20 d1ei9a_ 27.7 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases 21 c2hihB_ not modelled 27.3 47 PDB header:hydrolase Chain: B: PDB Molecule:lipase 46 kda form; PDBTitle: crystal structure of staphylococcus hyicus lipase 22 d1cita_ not modelled 26.6 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 23 d1ku0a_ not modelled 26.6 40 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 24 c2qp2A_ not modelled 24.8 25 PDB header:unknown function Chain: A: PDB Molecule:unknown protein; PDBTitle: structure of a macpf/perforin-like protein 25 c2zkqn_ not modelled 23.2 36 PDB header:ribosomal protein/rna Chain: N: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 26 d1xbta2 not modelled 23.2 28 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 27 d1jmkc_ not modelled 23.2 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases 28 c2eblA_ not modelled 22.5 24 PDB header:transcription Chain: A: PDB Molecule:coup transcription factor 1; PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1 29 c3e2iA_ not modelled 22.3 33 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from s. aureus 30 c2b8tA_ not modelled 21.7 45 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from u.urealyticum in2 complex with thymidine 31 c2p0pA_ not modelled 21.1 33 PDB header:metal binding protein Chain: A: PDB Molecule:alr1010 protein; PDBTitle: calcium binding protein in the free form 32 c3dzyA_ not modelled 20.7 33 PDB header:transcription/dna Chain: A: PDB Molecule:retinoic acid receptor rxr-alpha; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with rosiglitazone, 9-cis retinoic acid and ncoa2 peptide 33 d1mo2a_ not modelled 20.0 29 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases 34 c1mo2A_ not modelled 20.0 29 PDB header:transferase Chain: A: PDB Molecule:erythronolide synthase, modules 5 and 6; PDBTitle: thioesterase domain from 6-deoxyerythronolide synthase2 (debs te), ph 8.5 35 c2xznN_ not modelled 20.0 27 PDB header:ribosome Chain: N: PDB Molecule:rps29e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 36 d1x3za1 not modelled 19.8 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 37 d1cvla_ not modelled 19.6 47 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 38 d1kb2a_ not modelled 19.5 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 39 c2envA_ not modelled 19.3 31 PDB header:transcription Chain: A: PDB Molecule:peroxisome proliferator-activated receptor delta; PDBTitle: solution sturcture of the c4-type zinc finger domain from2 human peroxisome proliferator-activated receptor delta 40 d1xkta_ not modelled 19.3 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases 41 c3jyvN_ not modelled 19.1 27 PDB header:ribosome Chain: N: PDB Molecule:40s ribosomal protein s29(a); PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution 42 c1bomB_ not modelled 19.1 31 PDB header:insulin-like brain-secretory peptide Chain: B: PDB Molecule:bombyxin-ii,bombyxin a-6; PDBTitle: three-dimensional structure of bombyxin-ii, an insulin-2 related brain-secretory peptide of the silkmoth bombyx3 mori: comparison with insulin and relaxin 43 d1ynwa1 not modelled 19.0 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 44 c3lcrA_ not modelled 18.8 47 PDB header:hydrolase Chain: A: PDB Molecule:tautomycetin biosynthetic pks; PDBTitle: thioesterase from tautomycetin biosynthhetic pathway 45 d2f4ma1 not modelled 18.4 36 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 46 d1r0na_ not modelled 18.1 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 47 d1r4ia_ not modelled 18.1 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 48 c1r4iA_ not modelled 18.1 29 PDB header:transcription/dna Chain: A: PDB Molecule:androgen receptor; PDBTitle: crystal structure of androgen receptor dna-binding domain2 bound to a direct repeat response element 49 d2h8pc1 not modelled 17.9 27 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 50 d1weoa_ not modelled 17.6 33 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 51 d1tcaa_ not modelled 17.3 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 52 c2dllA_ not modelled 17.1 19 PDB header:cytokine Chain: A: PDB Molecule:interferon regulatory factor 4; PDBTitle: solution structure of the irf domain of human interferon2 regulator factors 4 53 d1dszb_ not modelled 16.9 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 54 d1uxoa_ not modelled 16.7 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:YdeN-like 55 c2yqpA_ not modelled 16.0 33 PDB header:gene regulation, hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx59; PDBTitle: solution structure of the zf-hit domain in dead (asp-glu-2 ala-asp) box polypeptide 59 56 d1lo1a_ not modelled 15.7 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 57 d1bdsa_ not modelled 15.6 46 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 58 d1kb6b_ not modelled 15.5 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 59 d1jbsa_ not modelled 14.9 44 Fold:Microbial ribonucleases Superfamily:Microbial ribonucleases Family:Ribotoxin 60 d4lipd_ not modelled 14.4 60 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 61 c3ahpA_ not modelled 13.8 25 PDB header:electron transport Chain: A: PDB Molecule:cuta1; PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1 62 d1xx6a2 not modelled 13.7 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 63 c2ja1A_ not modelled 13.6 28 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor. 64 d1ex9a_ not modelled 13.2 40 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 65 d2ccya_ not modelled 13.2 36 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 66 c2j0eA_ not modelled 13.1 9 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei 67 d1mqva_ not modelled 12.9 25 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 68 d2hfha_ not modelled 12.7 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 69 d2bv3a4 not modelled 12.7 17 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 70 c3bdvB_ not modelled 12.3 43 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein duf1234; PDBTitle: crystal structure of a putative yden-like hydrolase (eca3091) from2 pectobacterium atrosepticum scri1043 at 1.66 a resolution 71 c2orvB_ not modelled 12.2 18 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: human thymidine kinase 1 in complex with tp4a 72 d1jw2a_ not modelled 12.1 47 Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA 73 c1pjaA_ not modelled 11.9 60 PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2) 74 d1pjaa_ not modelled 11.9 60 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases 75 d1kbha_ not modelled 11.8 70 Fold:Nuclear receptor coactivator interlocking domain Superfamily:Nuclear receptor coactivator interlocking domain Family:Nuclear receptor coactivator interlocking domain 76 c2zyiB_ not modelled 11.8 29 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 77 c3cbbA_ not modelled 11.6 46 PDB header:transcription/dna Chain: A: PDB Molecule:hepatocyte nuclear factor 4-alpha, dna binding PDBTitle: crystal structure of hepatocyte nuclear factor 4alpha in2 complex with dna: diabetes gene product 78 c1l7qA_ not modelled 11.6 29 PDB header:hydrolase Chain: A: PDB Molecule:cocaine esterase; PDBTitle: ser117ala mutant of bacterial cocaine esterase coce 79 d2nlla_ not modelled 11.6 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 80 d1nj1a2 not modelled 11.4 36 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 81 c3mplA_ not modelled 11.4 17 PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) 82 c1qgeD_ not modelled 11.4 47 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 83 d2hana1 not modelled 11.3 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 84 c2ri0B_ not modelled 11.1 19 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 85 c2rauA_ not modelled 11.1 27 PDB header:hydrolase Chain: A: PDB Molecule:putative esterase; PDBTitle: crystal structure of a putative lipase (np_343859.1) from sulfolobus2 solfataricus at 1.85 a resolution 86 c1dtcA_ not modelled 11.0 36 PDB header:toxin Chain: A: PDB Molecule:acetyl-delta-toxin; PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels 87 c2dtbA_ not modelled 11.0 36 PDB header:toxin Chain: A: PDB Molecule:delta-toxin; PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels 88 c2kamA_ not modelled 11.0 36 PDB header:toxin Chain: A: PDB Molecule:delta-hemolysin; PDBTitle: nmr structure of delta-toxin from staphylococcus aureus in2 cd3oh 89 c3lp5A_ not modelled 10.9 24 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 90 c3eswA_ not modelled 10.9 21 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 91 c1r0nB_ not modelled 10.6 33 PDB header:transcription/dna Chain: B: PDB Molecule:ecdysone receptor; PDBTitle: crystal structure of heterodimeric ecdsyone receptor dna2 binding complex 92 c2d8zA_ not modelled 10.5 16 PDB header:signaling protein, structural protein Chain: A: PDB Molecule:four and a half lim domains 2; PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2) 93 d1gqaa_ not modelled 10.5 25 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 94 d1bbha_ not modelled 10.3 25 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 95 d2c52b1 not modelled 10.2 71 Fold:Nuclear receptor coactivator interlocking domain Superfamily:Nuclear receptor coactivator interlocking domain Family:Nuclear receptor coactivator interlocking domain 96 c1t98B_ not modelled 10.2 18 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of mukf(1-287) 97 c2h7xA_ not modelled 10.2 40 PDB header:hydrolase Chain: A: PDB Molecule:type i polyketide synthase pikaiv; PDBTitle: pikromycin thioesterase adduct with reduced triketide2 affinity label 98 d2hanb1 not modelled 10.0 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 99 d1lpbb2 not modelled 9.9 56 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0