Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	R	F	S	L	A	I	L	A	L	V	V	A	T	G	A	Q	A	A	S	E	K	V	E	M	N	L	V	T	S	Q	G	V	G	Q	S	I	G	S	V	T	I	T	E	T	D	K	G	L	E	F	S	P	D	L	K	A	L	P
Secondary structure
SS confidence
Disorder		?	?	?	?										?	?	?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	G	E	H	G	F	H	I	H	A	K	G	S	C	Q	P	A	T	K	D	G	K	A	S	A	A	E	S	A	G	G	H	L	D	P	Q	N	T	G	K	H	E	G	P	E	G	A	G	H	L	G	D	L	P	A	L	V	V	N	N
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?											?			?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Sequence		D	G	K	A	T	D	A	V	I	A	P	R	L	K	S	L	D	E	I	K	D	K	A	L	M	V	H	V	G	G	D	N	M	S	D	Q	P	K	P	L	G	G	G	G	E	R	Y	A	C	G	V	I	K
Secondary structure
SS confidence
Disorder																?	?	?														?	?	?	?	?	?	?	?	?	?	?	?	?										?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1eso chain A Region: 20 - 173 Aligned: 154 Modelled: 154 Confidence: 100.0% Identity: 100% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 2aqm chain A Region: 20 - 173 Aligned: 154 Modelled: 154 Confidence: 100.0% Identity: 55% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: cu/zn superoxide dismutase from brucella abortus Phyre2 PDB 1eqw chain A Region: 23 - 173 Aligned: 151 Modelled: 151 Confidence: 100.0% Identity: 57% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 1pzs chain A Region: 24 - 173 Aligned: 147 Modelled: 150 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase, metal binding protein Chain: A: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: crystal structure of a cu-zn superoxide dismutase from mycobacterium2 tuberculosis at 1.63 resolution Phyre2 PDB 1pzs chain A Region: 24 - 173 Aligned: 147 Modelled: 150 Confidence: 100.0% Identity: 29% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 1oal chain A Region: 24 - 173 Aligned: 149 Modelled: 150 Confidence: 100.0% Identity: 47% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 2aps chain A Region: 20 - 173 Aligned: 154 Modelled: 154 Confidence: 100.0% Identity: 51% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 1s4i chain C Region: 23 - 172 Aligned: 141 Modelled: 150 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase-like protein yojm; PDBTitle: crystal structure of a sod-like protein from bacillus subtilis Phyre2 PDB 1do5 chain A Region: 22 - 172 Aligned: 142 Modelled: 151 Confidence: 100.0% Identity: 26% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 1q0e chain A Region: 24 - 172 Aligned: 141 Modelled: 149 Confidence: 100.0% Identity: 26% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 3f7l chain A Region: 24 - 172 Aligned: 140 Modelled: 141 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:copper,zinc superoxide dismutase; PDBTitle: x-ray crystal structure of alvinella pompejana cu,zn2 superoxide dismutase Phyre2 PDB 1srd chain A Region: 22 - 172 Aligned: 142 Modelled: 143 Confidence: 100.0% Identity: 30% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 2q2l chain B Region: 24 - 172 Aligned: 141 Modelled: 149 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from p.2 atrosanguina Phyre2 PDB 2c9v chain A domain 1 Region: 24 - 172 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 29% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 1to4 chain A Region: 22 - 172 Aligned: 142 Modelled: 143 Confidence: 100.0% Identity: 27% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 3ce1 chain A Region: 24 - 172 Aligned: 139 Modelled: 149 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: crystal structure of the cu/zn superoxide dismutase from2 cryptococcus liquefaciens strain n6 Phyre2 PDB 1xso chain A Region: 24 - 172 Aligned: 139 Modelled: 141 Confidence: 100.0% Identity: 32% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 2e47 chain A Region: 19 - 172 Aligned: 144 Modelled: 154 Confidence: 100.0% Identity: 28% PDB header:metal binding protein Chain: A: PDB Molecule:time interval measuring enzyme time; PDBTitle: crystal structure analysis of the clock protein ea4 (glycosylation2 form) Phyre2 PDB 1f1g chain A Region: 24 - 172 Aligned: 140 Modelled: 141 Confidence: 100.0% Identity: 26% Fold: Immunoglobulin-like beta-sandwich Superfamily: Cu,Zn superoxide dismutase-like Family: Cu,Zn superoxide dismutase-like Phyre2 PDB 3l9e chain C Region: 23 - 172 Aligned: 139 Modelled: 142 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: crystal structures of holo and cu-deficient cu/znsod from the silkworm2 bombyx mori and the implications in amyotrophic lateral sclerosis Phyre2 1 d1esoa_ 2 c2aqmA_ 3 d1eqwa_ 4 c1pzsA_ 5 d1pzsa_ 6 d1oala_ 7 d2apsa_ 8 c1s4iC_ 9 d1do5a_ 10 d1q0ea_ 11 c3f7lA_ 12 d1srda_ 13 c2q2lB_ 14 d2c9va1 15 d1to4a_ 16 c3ce1A_ 17 d1xsoa_ 18 c2e47A_ 19 d1f1ga_ 20 c3l9eC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1esoa_ 100.0 100 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 2 c2aqmA_ 100.0 55 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: cu/zn superoxide dismutase from brucella abortus 3 d1eqwa_ 100.0 57 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 4 c1pzsA_ 100.0 29 PDB header:oxidoreductase, metal binding protein Chain: A: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: crystal structure of a cu-zn superoxide dismutase from mycobacterium2 tuberculosis at 1.63 resolution 5 d1pzsa_ 100.0 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 6 d1oala_ 100.0 47 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 7 d2apsa_ 100.0 51 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 8 c1s4iC_ 100.0 35 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase-like protein yojm; PDBTitle: crystal structure of a sod-like protein from bacillus subtilis 9 d1do5a_ 100.0 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 10 d1q0ea_ 100.0 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 11 c3f7lA_ 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:copper,zinc superoxide dismutase; PDBTitle: x-ray crystal structure of alvinella pompejana cu,zn2 superoxide dismutase 12 d1srda_ 100.0 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 13 c2q2lB_ 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from p.2 atrosanguina 14 d2c9va1 100.0 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 15 d1to4a_ 100.0 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 16 c3ce1A_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: crystal structure of the cu/zn superoxide dismutase from2 cryptococcus liquefaciens strain n6 17 d1xsoa_ 100.0 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 18 c2e47A_ 100.0 28 PDB header:metal binding protein Chain: A: PDB Molecule:time interval measuring enzyme time; PDBTitle: crystal structure analysis of the clock protein ea4 (glycosylation2 form) 19 d1f1ga_ 100.0 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 20 c3l9eC_ 100.0 29 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: crystal structures of holo and cu-deficient cu/znsod from the silkworm2 bombyx mori and the implications in amyotrophic lateral sclerosis 21 c2jlpA_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:extracellular superoxide dismutase (cu-zn); PDBTitle: crystal structure of human extracellular copper-zinc2 superoxide dismutase. 22 d1ej8a_ not modelled 100.0 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 23 c3kbeA_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [cu-zn]; PDBTitle: metal-free c. elegans cu,zn superoxide dismutase 24 c1jk9D_ not modelled 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: heterodimer between h48f-ysod1 and yccs 25 c1qupA_ not modelled 100.0 20 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 26 c3hogA_ not modelled 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [cu-zn], chloroplastic; PDBTitle: metal-free tomato chloroplast superoxide dismutase 27 d1jk9b1 not modelled 100.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 28 c1zpuE_ not modelled 48.1 30 PDB header:oxidoreductase Chain: E: PDB Molecule:iron transport multicopper oxidase fet3; PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import 29 d1gska3 not modelled 31.0 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 30 c1of0A_ not modelled 25.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:spore coat protein a; PDBTitle: crystal structure of bacillus subtilis cota after 1h2 soaking with ebs 31 c3zx1A_ not modelled 23.3 29 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, putative; PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase 32 d1e30a_ not modelled 21.5 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 33 c2g23G_ not modelled 20.5 33 PDB header:oxidoreductase Chain: G: PDB Molecule:phenoxazinone synthase; PDBTitle: the crystal structure of hexameric phenoxazinone synthase 34 d1kyaa3 not modelled 13.7 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 35 d1ibya_ not modelled 13.1 29 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 36 d1bf2a1 not modelled 11.7 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 37 c2fqeA_ not modelled 11.2 28 PDB header:oxidoreductase Chain: A: PDB Molecule:blue copper oxidase cueo; PDBTitle: crystal structures of e. coli laccase cueo under different2 copper binding situations 38 d1kv7a3 not modelled 10.7 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 39 d1x53a1 not modelled 10.1 14 Fold:TBP-like Superfamily:Bet v1-like Family:AHSA1 domain 40 c2yxwB_ not modelled 10.0 29 PDB header:oxidoreductase Chain: B: PDB Molecule:blue copper oxidase cueo; PDBTitle: the deletion mutant of multicopper oxidase cueo 41 c2jwyA_ not modelled 9.2 24 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540 42 c2f2bA_ not modelled 8.6 50 PDB header:membrane protein Chain: A: PDB Molecule:aquaporin aqpm; PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution 43 c3ottB_ not modelled 8.5 19 PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron 44 d1y02a2 not modelled 8.3 18 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 45 c2q9oA_ not modelled 7.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase-1; PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase 46 c2kpsA_ not modelled 7.5 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of domain iv from the ybbr family protein of2 desulfitobacterium hafniense 47 d1aoza3 not modelled 7.5 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 48 d1od3a_ not modelled 7.4 13 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 6 carbohydrate binding module, CBM6 49 d1gyca3 not modelled 7.2 30 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 50 d2q9oa3 not modelled 7.1 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 51 d1h6ia_ not modelled 7.1 67 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 52 c2w2eA_ not modelled 7.0 67 PDB header:membrane protein Chain: A: PDB Molecule:aquaporin; PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin,2 aqy1, in a closed conformation at ph 3.5 53 c2kq1A_ not modelled 6.7 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh0266 protein; PDBTitle: solution structure of protein bh0266 from bacillus2 halodurans. northeast structural genomics consortium target3 bhr97a 54 c3iyzA_ not modelled 6.7 67 PDB header:transport protein Chain: A: PDB Molecule:aquaporin-4; PDBTitle: structure of aquaporin-4 s180d mutant at 10.0 a resolution from2 electron micrograph 55 c3c02A_ not modelled 6.7 50 PDB header:membrane protein Chain: A: PDB Molecule:aquaglyceroporin; PDBTitle: x-ray structure of the aquaglyceroporin from plasmodium falciparum 56 c3llqB_ not modelled 6.6 67 PDB header:membrane protein Chain: B: PDB Molecule:aquaporin z 2; PDBTitle: aquaporin structure from plant pathogen agrobacterium tumerfaciens 57 c2wnyB_ not modelled 6.6 14 PDB header:unknown function Chain: B: PDB Molecule:conserved protein mth689; PDBTitle: structure of mth689, a duf54 protein from methanothermobacter2 thermautotrophicus 58 c2d57A_ not modelled 6.5 67 PDB header:transport protein Chain: A: PDB Molecule:aquaporin-4; PDBTitle: double layered 2d crystal structure of aquaporin-4 (aqp4m23) at 3.2 a2 resolution by electron crystallography 59 d1hfua3 not modelled 6.5 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 60 c2xu9A_ not modelled 6.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: crystal structure of laccase from thermus thermophilus hb27 61 c3gd8A_ not modelled 6.2 67 PDB header:membrane protein Chain: A: PDB Molecule:aquaporin-4; PDBTitle: crystal structure of human aquaporin 4 at 1.8 and its mechanism of2 conductance 62 d1fx8a_ not modelled 6.1 67 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 63 c1ldaA_ not modelled 6.0 67 PDB header:transport protein Chain: A: PDB Molecule:glycerol uptake facilitator protein; PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol 64 d1ymga1 not modelled 6.0 50 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 65 c1ymgA_ not modelled 6.0 50 PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution 66 c3d9sB_ not modelled 6.0 67 PDB header:membrane protein Chain: B: PDB Molecule:aquaporin-5; PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure 67 d1j4na_ not modelled 5.9 67 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 68 c2b5fD_ not modelled 5.8 67 PDB header:transport protein,membrane protein Chain: D: PDB Molecule:aquaporin; PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution 69 d2ysca1 not modelled 5.6 50 Fold:WW domain-like Superfamily:WW domain Family:WW domain 70 c2zshB_ not modelled 5.6 33 PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor 71 d2qfra1 not modelled 5.5 6 Fold:Immunoglobulin-like beta-sandwich Superfamily:Purple acid phosphatase, N-terminal domain Family:Purple acid phosphatase, N-terminal domain 72 d2pa7a1 not modelled 5.5 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 73 c3l1eA_ not modelled 5.5 12 PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin a chain; PDBTitle: bovine alphaa crystallin zinc bound 74 c3htrB_ not modelled 5.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein; PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris 75 c1gycA_ not modelled 5.3 32 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase 2; PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions 76 d1rc2a_ not modelled 5.3 67 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 77 d2ozka1 not modelled 5.2 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Nsp15 N-terminal domain-like 78 c2r1fB_ not modelled 5.2 57 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:predicted aminodeoxychorismate lyase; PDBTitle: crystal structure of predicted aminodeoxychorismate lyase from2 escherichia coli 79 d1akpa_ not modelled 5.2 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Actinoxanthin-like Family:Actinoxanthin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0