Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	K	N	L	P	Q	I	V	L	L	N	I	V	G	L	A	L	F	L	S	W	Y	I	P	V	N	H	G	F	W	L	P	I	D	A	D	I	F	Y	F	F	N	Q	K	L	V	E	S	K	A	F	L	W	L	V	A	L	T	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	R	A	F	D	G	C	S	L	L	A	M	G	M	L	M	L	S	F	W	L	K	E	N	A	P	G	R	R	R	I	V	I	I	G	L	V	M	L	L	T	A	V	V	L	N	Q	L	G	Q	A	L	I	P	V	K	R	A	S	P
Secondary structure
SS confidence
Disorder																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	L	T	F	T	D	I	N	R	V	S	E	L	L	S	V	P	T	K	D	A	S	R	D	S	F	P	G	D	H	G	M	M	L	L	I	F	S	A	F	M	W	R	Y	F	G	K	V	A	G	L	I	A	L	I	I	F	V	V	F
Secondary structure
SS confidence
Disorder																				?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence		A	F	P	R	V	M	I	G	A	H	W	F	T	D	I	I	V	G	S	M	T	V	I	L	I	G	L	P	W	V	L	L	T	P	L	S	D	R	L	I	T	F	F	D	K	S	L	P	G	K	N	K	H	F	Q	N	K
Secondary structure
SS confidence
Disorder																																																	?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1d2t chain A Region: 83 - 221 Aligned: 131 Modelled: 139 Confidence: 99.6% Identity: 11% Fold: Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase Family: Type 2 phosphatidic acid phosphatase, PAP2 Phyre2 PDB 2akc chain C Region: 83 - 221 Aligned: 133 Modelled: 139 Confidence: 99.5% Identity: 13% PDB header:hydrolase Chain: C: PDB Molecule:class a nonspecific acid phosphatase phon; PDBTitle: crystal structure of tungstate complex of the phon protein2 from s. typhimurium Phyre2 PDB 1qi9 chain A Region: 136 - 210 Aligned: 75 Modelled: 75 Confidence: 97.9% Identity: 27% Fold: Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase Family: Haloperoxidase (bromoperoxidase) Phyre2 PDB 1vns chain A Region: 90 - 194 Aligned: 103 Modelled: 105 Confidence: 97.7% Identity: 16% Fold: Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase Family: Chloroperoxidase Phyre2 PDB 1vng chain A Region: 90 - 194 Aligned: 103 Modelled: 105 Confidence: 97.6% Identity: 16% PDB header:haloperoxidase Chain: A: PDB Molecule:vanadium chloroperoxidase; PDBTitle: chloroperoxidase from the fungus curvularia inaequalis:2 mutant h404a Phyre2 PDB 1qhb chain A Region: 123 - 210 Aligned: 88 Modelled: 88 Confidence: 97.0% Identity: 16% Fold: Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase Family: Haloperoxidase (bromoperoxidase) Phyre2 PDB 1up8 chain A Region: 136 - 210 Aligned: 75 Modelled: 75 Confidence: 96.9% Identity: 16% Fold: Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase Family: Haloperoxidase (bromoperoxidase) Phyre2 PDB 2knc chain A Region: 195 - 237 Aligned: 40 Modelled: 43 Confidence: 27.4% Identity: 15% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 3fse chain B Region: 188 - 235 Aligned: 48 Modelled: 48 Confidence: 22.5% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution Phyre2 PDB 2ys9 chain A Region: 219 - 228 Aligned: 10 Modelled: 10 Confidence: 17.9% Identity: 40% PDB header:transcription Chain: A: PDB Molecule:homeobox and leucine zipper protein homez; PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez Phyre2 PDB 2a65 chain A domain 1 Region: 2 - 230 Aligned: 228 Modelled: 229 Confidence: 17.5% Identity: 14% Fold: SNF-like Superfamily: SNF-like Family: SNF-like Phyre2 PDB 1eh9 chain A domain 2 Region: 142 - 148 Aligned: 7 Modelled: 7 Confidence: 14.5% Identity: 57% Fold: Glycosyl hydrolase domain Superfamily: Glycosyl hydrolase domain Family: alpha-Amylases, C-terminal beta-sheet domain Phyre2 PDB 1dsv chain A Region: 188 - 194 Aligned: 7 Modelled: 7 Confidence: 14.3% Identity: 43% Fold: Retrovirus zinc finger-like domains Superfamily: Retrovirus zinc finger-like domains Family: Retrovirus zinc finger-like domains Phyre2 PDB 1cl4 chain A Region: 188 - 194 Aligned: 7 Modelled: 7 Confidence: 12.7% Identity: 43% PDB header:viral protein Chain: A: PDB Molecule:protein (gag polyprotein); PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv) Phyre2 PDB 2oni chain A Region: 106 - 151 Aligned: 46 Modelled: 46 Confidence: 10.8% Identity: 15% PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4-like protein; PDBTitle: catalytic domain of the human nedd4-like e3 ligase Phyre2 PDB 3gr1 chain A Region: 216 - 229 Aligned: 14 Modelled: 14 Confidence: 10.8% Identity: 21% PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) Phyre2 PDB 2i3d chain A domain 1 Region: 213 - 229 Aligned: 17 Modelled: 17 Confidence: 10.4% Identity: 24% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: Atu1826-like Phyre2 PDB 2i3d chain A Region: 213 - 229 Aligned: 17 Modelled: 17 Confidence: 10.4% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu1826; PDBTitle: crystal structure of protein of unknown function atu1826, a putative2 alpha/beta hydrolase from agrobacterium tumefaciens Phyre2 PDB 3ksr chain A Region: 215 - 230 Aligned: 16 Modelled: 16 Confidence: 10.1% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:putative serine hydrolase; PDBTitle: crystal structure of a putative serine hydrolase (xcc3885) from2 xanthomonas campestris pv. campestris at 2.69 a resolution Phyre2 PDB 3olm chain A Region: 106 - 151 Aligned: 46 Modelled: 46 Confidence: 9.6% Identity: 13% PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rsp5; PDBTitle: structure and function of a ubiquitin binding site within the2 catalytic domain of a hect ubiquitin ligase Phyre2 1 d1d2ta_ 2 c2akcC_ 3 d1qi9a_ 4 d1vnsa_ 5 c1vngA_ 6 d1qhba_ 7 d1up8a_ 8 c2kncA_ 9 c3fseB_ 10 c2ys9A_ 11 d2a65a1 12 d1eh9a2 13 d1dsva_ 14 c1cl4A_ 15 c2oniA_ 16 c3gr1A_ 17 d2i3da1 18 c2i3dA_ 19 c3ksrA_ 20 c3olmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1d2ta_ 99.6 11 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Type 2 phosphatidic acid phosphatase, PAP2 2 c2akcC_ 99.5 13 PDB header:hydrolase Chain: C: PDB Molecule:class a nonspecific acid phosphatase phon; PDBTitle: crystal structure of tungstate complex of the phon protein2 from s. typhimurium 3 d1qi9a_ 97.9 27 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase) 4 d1vnsa_ 97.7 16 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Chloroperoxidase 5 c1vngA_ 97.6 16 PDB header:haloperoxidase Chain: A: PDB Molecule:vanadium chloroperoxidase; PDBTitle: chloroperoxidase from the fungus curvularia inaequalis:2 mutant h404a 6 d1qhba_ 97.0 16 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase) 7 d1up8a_ 96.9 16 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase) 8 c2kncA_ 27.4 15 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 9 c3fseB_ 22.5 19 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 10 c2ys9A_ 17.9 40 PDB header:transcription Chain: A: PDB Molecule:homeobox and leucine zipper protein homez; PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez 11 d2a65a1 17.5 14 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 12 d1eh9a2 14.5 57 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 13 d1dsva_ 14.3 43 Fold:Retrovirus zinc finger-like domains Superfamily:Retrovirus zinc finger-like domains Family:Retrovirus zinc finger-like domains 14 c1cl4A_ 12.7 43 PDB header:viral protein Chain: A: PDB Molecule:protein (gag polyprotein); PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv) 15 c2oniA_ 10.8 15 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4-like protein; PDBTitle: catalytic domain of the human nedd4-like e3 ligase 16 c3gr1A_ 10.8 21 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 17 d2i3da1 10.4 24 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Atu1826-like 18 c2i3dA_ 10.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu1826; PDBTitle: crystal structure of protein of unknown function atu1826, a putative2 alpha/beta hydrolase from agrobacterium tumefaciens 19 c3ksrA_ 10.1 19 PDB header:hydrolase Chain: A: PDB Molecule:putative serine hydrolase; PDBTitle: crystal structure of a putative serine hydrolase (xcc3885) from2 xanthomonas campestris pv. campestris at 2.69 a resolution 20 c3olmA_ 9.6 13 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rsp5; PDBTitle: structure and function of a ubiquitin binding site within the2 catalytic domain of a hect ubiquitin ligase 21 c1zvdA_ not modelled 9.4 20 PDB header:ligase Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2; PDBTitle: regulation of smurf2 ubiquitin ligase activity by anchoring the e2 to2 the hect domain 22 d2r4qa1 not modelled 9.2 22 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 23 d1puna_ not modelled 8.6 40 Fold:Nudix Superfamily:Nudix Family:MutT-like 24 c2k1aA_ not modelled 8.4 19 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 25 c2y69Q_ not modelled 7.8 9 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 26 c2k1kA_ not modelled 7.4 15 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 27 c2k1lA_ not modelled 7.4 15 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 28 c2k1kB_ not modelled 7.4 15 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 29 c2k1lB_ not modelled 7.4 15 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 30 d1v54d_ not modelled 7.3 9 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 31 c3a0hX_ not modelled 7.2 24 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 32 c3a0bX_ not modelled 7.2 24 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 33 c3a0bx_ not modelled 7.2 24 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 34 c3a0hx_ not modelled 7.2 24 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 35 c2b0tA_ not modelled 7.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp isocitrate dehydrogenase; PDBTitle: structure of monomeric nadp isocitrate dehydrogenase 36 d2ciwa2 not modelled 7.1 13 Fold:EF Hand-like Superfamily:Cloroperoxidase Family:Cloroperoxidase 37 d1nd7a_ not modelled 6.9 13 Fold:Hect, E3 ligase catalytic domain Superfamily:Hect, E3 ligase catalytic domain Family:Hect, E3 ligase catalytic domain 38 c3q4iA_ not modelled 6.8 16 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 39 d1c4za_ not modelled 6.8 13 Fold:Hect, E3 ligase catalytic domain Superfamily:Hect, E3 ligase catalytic domain Family:Hect, E3 ligase catalytic domain 40 d2j7ja2 not modelled 6.8 16 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 41 d1itwa_ not modelled 6.6 31 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Monomeric isocitrate dehydrogenase 42 c1s5lx_ not modelled 6.5 24 PDB header:photosynthesis Chain: X: PDB Molecule:photosystem ii psbx protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 43 c3esiD_ not modelled 6.5 22 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 erwinia carotovora subsp. atroseptica. northeast3 structural genomics target ewr179 44 d1njqa_ not modelled 6.4 8 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Plant C2H2 finger (QALGGH zinc finger) 45 c2jvbA_ not modelled 6.3 21 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 46 c3g1nA_ not modelled 6.3 16 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1; PDBTitle: catalytic domain of the human e3 ubiquitin-protein ligase2 huwe1 47 c3hd6A_ not modelled 6.3 10 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 48 c3aa6C_ not modelled 6.2 50 PDB header:protein binding Chain: C: PDB Molecule:23mer peptide from cd2-associated protein; PDBTitle: crystal structure of actin capping protein in complex with the cp-2 binding motif derived from cd2ap 49 c1bzkA_ not modelled 6.2 13 PDB header:transport protein Chain: A: PDB Molecule:protein (band 3 anion transport protein); PDBTitle: structural studies on the effects of the deletion in the2 red cell anion exchanger (band3, ae1) associated with3 south east asian ovalocytosis. 50 d1x6fa1 not modelled 6.1 27 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 51 c3id9B_ not modelled 5.9 21 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 52 c1xaxA_ not modelled 5.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004; PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae 53 d1ju3a2 not modelled 5.7 28 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PepX catalytic domain-like 54 d1l7aa_ not modelled 5.7 27 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetyl xylan esterase-like 55 d1gzsb_ not modelled 5.7 57 Fold:SopE-like GEF domain Superfamily:SopE-like GEF domain Family:SopE-like GEF domain 56 d1oxwa_ not modelled 5.6 29 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Patatin 57 c3hvyC_ not modelled 5.6 6 PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution 58 d1xm5a_ not modelled 5.6 13 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 59 d1tvia_ not modelled 5.6 27 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 60 c2qguA_ not modelled 5.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 61 d1r7ma1 not modelled 5.6 11 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Group I mobile intron endonuclease 62 c2e6kB_ not modelled 5.6 5 PDB header:transferase Chain: B: PDB Molecule:transketolase; PDBTitle: x-ray structure of thermus thermopilus hb8 tt0505 63 c1l7qA_ not modelled 5.5 19 PDB header:hydrolase Chain: A: PDB Molecule:cocaine esterase; PDBTitle: ser117ala mutant of bacterial cocaine esterase coce 64 c2fhwA_ not modelled 5.5 40 PDB header:signaling protein Chain: A: PDB Molecule:relaxin 3 (prorelaxin h3) (insulin-like peptide PDBTitle: solution structure of human relaxin-3 65 d2hu7a2 not modelled 5.5 8 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acylamino-acid-releasing enzyme, C-terminal donain 66 d2joka1 not modelled 5.4 57 Fold:SopE-like GEF domain Superfamily:SopE-like GEF domain Family:SopE-like GEF domain 67 d1r6ea_ not modelled 5.4 57 Fold:SopE-like GEF domain Superfamily:SopE-like GEF domain Family:SopE-like GEF domain 68 d3buxb2 not modelled 5.3 40 Fold:N-cbl like Superfamily:N-terminal domain of cbl (N-cbl) Family:N-terminal domain of cbl (N-cbl) 69 c2w2hD_ not modelled 5.3 50 PDB header:rna-binding protein Chain: D: PDB Molecule:protein tat; PDBTitle: structural basis of transcription activation by the cyclin2 t1-tat-tar rna complex from eiav 70 c3uk1A_ not modelled 5.3 8 PDB header:transferase Chain: A: PDB Molecule:transketolase; PDBTitle: crystal structure of a transketolase from burkholderia thailandensis2 with an oxidized cysteinesulfonic acid in the active site 71 d1vk6a2 not modelled 5.3 0 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 72 c3ib3A_ not modelled 5.2 24 PDB header:hydrolase Chain: A: PDB Molecule:coce/nond family hydrolase; PDBTitle: crystal structure of sacol2612 - coce/nond family hydrolase from2 staphylococcus aureus 73 c1ql1A_ not modelled 5.2 26 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 74 c2vlaA_ not modelled 5.1 15 PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease r.bpuji; PDBTitle: crystal structure of restriction endonuclease bpuji2 recognition domain in complex with cognate dna 75 c2ww9B_ not modelled 5.1 9 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 76 c1fdfA_ not modelled 5.1 57 PDB header:signaling protein Chain: A: PDB Molecule:rhodopsin; PDBTitle: helix 7 bovine rhodopsin 77 d1ifya_ not modelled 5.0 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0