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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3olmA_

Fold library idPDB HeaderMoleculeTitle
c3olmA_PDB header: ligaseChain: A: PDB Molecule: e3 ubiquitin-protein ligase rsp5;PDBTitle: structure and function of a ubiquitin binding site within the2 catalytic domain of a hect ubiquitin ligase


Added to library: Sat Mar 26 08:55:56 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRRKVIYFRSQPALRILPGQ
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Known secondary structure (DSSP)





TT




SS




TTTTSS
TTS




SS

SSGGGS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence CHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEREFFFLLSHEMFNPFYCLFEYSAYDNYTIQIN
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Known secondary structure (DSSP) TTSS
TS
TT

T
GGGSSSSSSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence PNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENS
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Known secondary structure (DSSP) GGGGGSTTTT





B
TT




TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence IDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIP
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Known secondary structure (DSSP)
TTT


BSTTSSTTGGGSB

TTTTTTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSR
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Known secondary structure (DSSP) TTS
T
B



TS

TTSS
S
S
 .........360.........370.........380.........390.........400.........410..
Sequence IPVNGFKDLQGSDGPRRFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETI
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Known secondary structure (DSSP) B
TT
GGG
TT



S
TTS

GGGT



SST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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