PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2vlaA_

Fold library id	PDB Header	Molecule	Title
c2vlaA_	PDB header: hydrolase	Chain: A: PDB Molecule: restriction endonuclease r.bpuji;	PDBTitle: crystal structure of restriction endonuclease bpuji2 recognition domain in complex with cognate dna

Links to external resources
Added to library: Tue Mar 16 14:40:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N Y N P E E Q F R C T I I R G K A K N M L D N L L P A Y A N I I D D I C P C D K A S F V K D F N N R L I E I L G E E T T K K T L D N H R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S B
S S S T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E I A G K L F G M F Y E D D E V I F P S G R T N K Y I E D S D Q P A F F K D I C F K F Q F P N G M D K L D K V I E K V G A K I Q I R Q F P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
B S
S S S
T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I L Q V L L T A D N N N I Q L S K D D I A Y Y V L N S L Q V L Q G K I K P I E V I E K I I E D R S N D I T K K V R H P G K E T S Y S M Q H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B
T T T B T T
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R E Q L N Y L E L A N L I R I D G N L V K L N Y R E A E N I N Y I A Q F W G N K P E F N A Y K Y D F T S E D D K K S F F K D W Q Q Y Y S N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S
G G G T T T T S
S S
G G G S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	Y	N	P	E	E	Q	F	R	C	T	I	I	R	G	K	A	K	N	M	L	D	N	L	L	P	A	Y	A	N	I	I	D	D	I	C	P	C	D	K	A	S	F	V	K	D	F	N	N	R	L	I	E	I	L	G	E	E	T	T	K	K	T	L	D	N	H	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	B									S	S	S	T	T																	S																				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	I	A	G	K	L	F	G	M	F	Y	E	D	D	E	V	I	F	P	S	G	R	T	N	K	Y	I	E	D	S	D	Q	P	A	F	F	K	D	I	C	F	K	F	Q	F	P	N	G	M	D	K	L	D	K	V	I	E	K	V	G	A	K	I	Q	I	R	Q	F	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S							T	T																														B	S		S	S	S											T	T			B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	L	Q	V	L	L	T	A	D	N	N	N	I	Q	L	S	K	D	D	I	A	Y	Y	V	L	N	S	L	Q	V	L	Q	G	K	I	K	P	I	E	V	I	E	K	I	I	E	D	R	S	N	D	I	T	K	K	V	R	H	P	G	K	E	T	S	Y	S	M	Q	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T			B									T	T	T	B					T	T																	T	T								T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	E	Q	L	N	Y	L	E	L	A	N	L	I	R	I	D	G	N	L	V	K	L	N	Y	R	E	A	E	N	I	N	Y	I	A	Q	F	W	G	N	K	P	E	F	N	A	Y	K	Y	D	F	T	S	E	D	D	K	K	S	F	F	K	D	W	Q	Q	Y	Y	S	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S					S	S						G	G	G									T	T	T	T	S			S	S		G	G	G	S		T	T