Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	I	I	S	V	A	L	K	R	H	S	T	K	A	F	D	A	S	K	K	L	T	P	E	Q	A	E	Q	I	K	T	L	L	Q	Y	S	P	S	S	T	N	S	Q	P	W	H	F	I	V	A	S	T	E	E	G	K	A	R	V
Secondary structure
SS confidence
Disorder		?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	K	S	A	A	G	N	Y	V	F	N	E	R	K	M	L	D	A	S	H	V	V	V	F	C	A	K	T	A	M	D	D	V	W	L	K	L	V	V	D	Q	E	D	A	D	G	H	F	A	T	P	E	A	K	A	A	N	D	K	G
Secondary structure
SS confidence
Disorder																															?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	K	F	F	A	D	M	H	R	K	D	L	H	D	D	A	E	W	M	A	K	Q	V	Y	L	N	V	G	N	F	L	L	G	V	A	A	L	G	L	D	A	V	P	I	E	G	F	D	A	A	I	L	D	A	E	F	G	L	K	E
Secondary structure
SS confidence
Disorder										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Sequence		K	G	Y	T	S	L	V	V	V	P	V	G	H	H	S	V	E	D	F	N	A	T	L	P	K	S	R	L	P	Q	N	I	T	L	T	E	V
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?	?	?									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yki chain A domain 1 Region: 2 - 217 Aligned: 216 Modelled: 216 Confidence: 100.0% Identity: 100% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1kqb chain A Region: 2 - 216 Aligned: 215 Modelled: 215 Confidence: 100.0% Identity: 88% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1vfr chain A Region: 1 - 217 Aligned: 215 Modelled: 217 Confidence: 100.0% Identity: 30% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3of4 chain A Region: 3 - 217 Aligned: 206 Modelled: 215 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution Phyre2 PDB 3ge6 chain B Region: 1 - 216 Aligned: 204 Modelled: 216 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution Phyre2 PDB 3bem chain A Region: 2 - 217 Aligned: 204 Modelled: 210 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution Phyre2 PDB 3gbh chain C Region: 1 - 217 Aligned: 205 Modelled: 213 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution Phyre2 PDB 3gr3 chain B Region: 1 - 217 Aligned: 215 Modelled: 217 Confidence: 100.0% Identity: 16% PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution Phyre2 PDB 3gag chain B Region: 2 - 217 Aligned: 201 Modelled: 212 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution Phyre2 PDB 2hay chain D Region: 2 - 217 Aligned: 207 Modelled: 215 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas Phyre2 PDB 1zch chain A domain 1 Region: 1 - 216 Aligned: 181 Modelled: 192 Confidence: 100.0% Identity: 23% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3n2s chain D Region: 2 - 216 Aligned: 180 Modelled: 188 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis Phyre2 PDB 1nox chain A Region: 1 - 216 Aligned: 197 Modelled: 216 Confidence: 100.0% Identity: 24% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1f5v chain A Region: 1 - 216 Aligned: 175 Modelled: 183 Confidence: 100.0% Identity: 21% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 2wzv chain B Region: 1 - 217 Aligned: 210 Modelled: 212 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis Phyre2 PDB 2b67 chain A domain 1 Region: 2 - 216 Aligned: 199 Modelled: 215 Confidence: 100.0% Identity: 20% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3eof chain B Region: 5 - 216 Aligned: 175 Modelled: 181 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution Phyre2 PDB 3gh8 chain A Region: 1 - 217 Aligned: 177 Modelled: 181 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit) Phyre2 PDB 1bkj chain A Region: 2 - 216 Aligned: 174 Modelled: 185 Confidence: 100.0% Identity: 25% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 2h0u chain A Region: 1 - 217 Aligned: 188 Modelled: 192 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori Phyre2 1 d1ykia1 2 d1kqba_ 3 d1vfra_ 4 c3of4A_ 5 c3ge6B_ 6 c3bemA_ 7 c3gbhC_ 8 c3gr3B_ 9 c3gagB_ 10 c2hayD_ 11 d1zcha1 12 c3n2sD_ 13 d1noxa_ 14 d1f5va_ 15 c2wzvB_ 16 d2b67a1 17 c3eofB_ 18 c3gh8A_ 19 d1bkja_ 20 c2h0uA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ykia1 100.0 100 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 2 d1kqba_ 100.0 88 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 3 d1vfra_ 100.0 30 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 4 c3of4A_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution 5 c3ge6B_ 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution 6 c3bemA_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution 7 c3gbhC_ 100.0 22 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution 8 c3gr3B_ 100.0 16 PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution 9 c3gagB_ 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution 10 c2hayD_ 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas 11 d1zcha1 100.0 23 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 12 c3n2sD_ 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis 13 d1noxa_ 100.0 24 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 14 d1f5va_ 100.0 21 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 15 c2wzvB_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis 16 d2b67a1 100.0 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 17 c3eofB_ 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution 18 c3gh8A_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit) 19 d1bkja_ 100.0 25 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 20 c2h0uA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori 21 c2islB_ not modelled 100.0 17 PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form) 22 d1ywqa1 not modelled 100.0 13 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 23 c3eo8A_ not modelled 100.0 18 PDB header:flavoprotein Chain: A: PDB Molecule:blub-like flavoprotein; PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution 24 d2ifaa1 not modelled 100.0 10 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 25 c3k6hB_ not modelled 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58 26 d2frea1 not modelled 100.0 17 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 27 c3koqC_ not modelled 100.0 25 PDB header:oxidoreductase Chain: C: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution 28 c3ge5A_ not modelled 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution 29 c2wqfA_ not modelled 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:copper induced nitroreductase d; PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn 30 c2r01A_ not modelled 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution 31 c2i7hE_ not modelled 100.0 18 PDB header:oxidoreductase Chain: E: PDB Molecule:nitroreductase-like family protein; PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus 32 c3g14B_ not modelled 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution 33 c3gfaB_ not modelled 100.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (cd3205) from clostridium difficile 630 at 1.35 a resolution 34 c3ek3A_ not modelled 100.0 16 PDB header:flavoprotein Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution 35 c3pxvD_ not modelled 100.0 21 PDB header:oxidoreductase Chain: D: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution 36 c3kwkA_ not modelled 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution 37 c3m5kA_ not modelled 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution 38 c3e39A_ not modelled 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution 39 c3e10B_ not modelled 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh oxidase; PDBTitle: crystal structure of putative nadh oxidase (np_348178.1)2 from clostridium acetobutylicum at 1.40 a resolution 40 c3hoiA_ not modelled 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017; PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution 41 c3hj9A_ not modelled 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution 42 c3bm2B_ not modelled 100.0 13 PDB header:oxidoreductase Chain: B: PDB Molecule:protein ydja; PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor 43 c3eo7A_ not modelled 99.9 19 PDB header:flavoprotein Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution 44 d1vkwa_ not modelled 99.8 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:Putative nitroreductase TM1586 45 d1oeyj_ not modelled 47.2 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 46 d2oc6a1 not modelled 31.8 4 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 47 c3nr7A_ not modelled 31.3 17 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83 48 d1ov9a_ not modelled 30.6 34 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 49 c3gyxJ_ not modelled 25.1 14 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 50 d1fs2b1 not modelled 19.1 25 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 51 c1nexC_ not modelled 18.5 22 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 52 c2p1nD_ not modelled 18.2 25 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 53 d2ovra1 not modelled 17.8 25 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 54 c2ovqA_ not modelled 17.2 25 PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 55 d1nexa1 not modelled 17.1 23 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 56 d2i8da1 not modelled 15.3 11 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 57 d1gefa_ not modelled 14.0 13 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 58 c1jsuC_ not modelled 13.3 9 PDB header:complex (transferase/cyclin/inhibitor) Chain: C: PDB Molecule:p27; PDBTitle: p27(kip1)/cyclin a/cdk2 complex 59 c2ds2B_ not modelled 12.2 18 PDB header:plant protein Chain: B: PDB Molecule:sweet protein mabinlin-2 chain b; PDBTitle: crystal structure of mabinlin ii 60 c3pywA_ not modelled 11.9 23 PDB header:structural protein Chain: A: PDB Molecule:s-layer protein sap; PDBTitle: the structure of the slh domain from b. anthracis surface array2 protein at 1.8a 61 c2f9jP_ not modelled 10.9 15 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 62 c3nznA_ not modelled 10.5 26 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 63 c1pnbB_ not modelled 9.6 23 PDB header:seed storage protein Chain: B: PDB Molecule:napin bnib; PDBTitle: structure of napin bnib, nmr, 10 structures 64 d1vlia1 not modelled 8.4 4 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 65 c1h6zA_ not modelled 8.2 10 PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei 66 c3k4iC_ not modelled 8.1 14 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000 67 d1ni8a_ not modelled 8.0 14 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 68 c1sm7A_ not modelled 7.6 19 PDB header:plant protein Chain: A: PDB Molecule:recombinant ib pronapin; PDBTitle: solution structure of the recombinant pronapin precursor,2 bnib. 69 d1vbga1 not modelled 7.4 9 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate phosphate dikinase, C-terminal domain 70 c3dnjB_ not modelled 7.3 15 PDB header:peptide binding protein Chain: B: PDB Molecule:atp-dependent clp protease adapter protein clps; PDBTitle: the structure of the caulobacter crescentus clps protease2 adaptor protein in complex with a n-end rule peptide 71 c2o8kA_ not modelled 7.2 18 PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element 72 d1wmib1 not modelled 7.2 18 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:RelB-like Family:RelB-like 73 c2qh9B_ not modelled 6.9 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 74 d1h75a_ not modelled 6.0 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0