Phyre 2 Results for F2X7N5

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Email | l.a.kelley@imperial.ac.uk
Description | F2X7N5
Date | Thu Jan 5 10:56:28 GMT 2012
Unique Job ID | 628bf467835c8b67

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1ykia1
Top template information
Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
216 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | D | I | I | S | V | A | L | K | R | H | S | T | K | A | F | D | A | S | K | K | L | T | P | E | Q | A | E | Q | I | K | T | L | L | Q | Y | S | P | S | S | T | N | S | Q | P | W | H | F | I | V | A | S | T | E | E | G | K | A | R | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | K | S | A | A | G | N | Y | V | F | N | E | R | K | M | L | D | A | S | H | V | V | V | F | C | A | K | T | A | M | D | D | V | W | L | K | L | V | V | D | Q | E | D | A | D | G | H | F | A | T | P | E | A | K | A | A | N | D | K | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | R | K | F | F | A | D | M | H | R | K | D | L | H | D | D | A | E | W | M | A | K | Q | V | Y | L | N | V | G | N | F | L | L | G | V | A | A | L | G | L | D | A | V | P | I | E | G | F | D | A | A | I | L | D | A | E | F | G | L | K | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | .
Sequence |  | K | G | Y | T | S | L | V | V | V | P | V | G | H | H | S | V | E | D | F | N | A | T | L | P | K | S | R | L | P | Q | N | I | T | L | T | E | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1ykia1 |

### PDB 1yki chain A domain 1

Region: 2 - 217
Aligned: 216
Modelled: 216
Confidence: 100.0%
Identity: 100%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
2 |
| d1kqba_ |

### PDB 1kqb chain A

Region: 2 - 216
Aligned: 215
Modelled: 215
Confidence: 100.0%
Identity: 88%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
3 |
| d1vfra_ |

### PDB 1vfr chain A

Region: 1 - 217
Aligned: 215
Modelled: 217
Confidence: 100.0%
Identity: 30%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
4 |
| c3of4A_ |

### PDB 3of4 chain A

Region: 3 - 217
Aligned: 206
Modelled: 215
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution

Phyre2
5 |
| c3ge6B_ |

### PDB 3ge6 chain B

Region: 1 - 216
Aligned: 204
Modelled: 216
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution

Phyre2
6 |
| c3bemA_ |

### PDB 3bem chain A

Region: 2 - 217
Aligned: 204
Modelled: 210
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn;
PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution

Phyre2
7 |
| c3gbhC_ |

### PDB 3gbh chain C

Region: 1 - 217
Aligned: 205
Modelled: 213
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase;
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution

Phyre2
8 |
| c3gr3B_ |

### PDB 3gr3 chain B

Region: 1 - 217
Aligned: 215
Modelled: 217
Confidence: 100.0%
Identity: 16%
PDB header:flavoprotein
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution

Phyre2
9 |
| c3gagB_ |

### PDB 3gag chain B

Region: 2 - 217
Aligned: 201
Modelled: 212
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution

Phyre2
10 |
| c2hayD_ |

### PDB 2hay chain D

Region: 2 - 217
Aligned: 207
Modelled: 215
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase;
PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas

Phyre2
11 |
| d1zcha1 |

### PDB 1zch chain A domain 1

Region: 1 - 216
Aligned: 181
Modelled: 192
Confidence: 100.0%
Identity: 23%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
12 |
| c3n2sD_ |

### PDB 3n2s chain D

Region: 2 - 216
Aligned: 180
Modelled: 188
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase;
PDBTitle: structure of nfra1 nitroreductase from b. subtilis

Phyre2
13 |
| d1noxa_ |

### PDB 1nox chain A

Region: 1 - 216
Aligned: 197
Modelled: 216
Confidence: 100.0%
Identity: 24%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
14 |
| d1f5va_ |

### PDB 1f5v chain A

Region: 1 - 216
Aligned: 175
Modelled: 183
Confidence: 100.0%
Identity: 21%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
15 |
| c2wzvB_ |

### PDB 2wzv chain B

Region: 1 - 217
Aligned: 210
Modelled: 212
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis

Phyre2
16 |
| d2b67a1 |

### PDB 2b67 chain A domain 1

Region: 2 - 216
Aligned: 199
Modelled: 215
Confidence: 100.0%
Identity: 20%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
17 |
| c3eofB_ |

### PDB 3eof chain B

Region: 5 - 216
Aligned: 175
Modelled: 181
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution

Phyre2
18 |
| c3gh8A_ |

### PDB 3gh8 chain A

Region: 1 - 217
Aligned: 177
Modelled: 181
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iodotyrosine dehalogenase 1;
PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit)

Phyre2
19 |
| d1bkja_ |

### PDB 1bkj chain A

Region: 2 - 216
Aligned: 174
Modelled: 185
Confidence: 100.0%
Identity: 25%
Fold: FMN-dependent nitroreductase-like
Superfamily: FMN-dependent nitroreductase-like
Family: NADH oxidase/flavin reductase

Phyre2
20 |
| c2h0uA_ |

### PDB 2h0u chain A

Region: 1 - 217
Aligned: 188
Modelled: 192
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-flavin oxidoreductase;
PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori

Phyre2
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74 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1ykia1 |
|  | 100.0 | 100 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
2 | d1kqba_ |
|  | 100.0 | 88 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
3 | d1vfra_ |
|  | 100.0 | 30 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
4 | c3of4A_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution
5 | c3ge6B_ |
|  | 100.0 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution
6 | c3bemA_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution
7 | c3gbhC_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution
8 | c3gr3B_ |
|  | 100.0 | 16 | PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution
9 | c3gagB_ |
|  | 100.0 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution
10 | c2hayD_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas
11 | d1zcha1 |
|  | 100.0 | 23 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
12 | c3n2sD_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis
13 | d1noxa_ |
|  | 100.0 | 24 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
14 | d1f5va_ |
|  | 100.0 | 21 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
15 | c2wzvB_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
16 | d2b67a1 |
|  | 100.0 | 20 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
17 | c3eofB_ |
|  | 100.0 | 21 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution
18 | c3gh8A_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit)
19 | d1bkja_ |
|  | 100.0 | 25 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
20 | c2h0uA_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori
21 | c2islB_ |
| not modelled | 100.0 | 17 | PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form)
22 | d1ywqa1 |
| not modelled | 100.0 | 13 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
23 | c3eo8A_ |
| not modelled | 100.0 | 18 | PDB header:flavoprotein Chain: A: PDB Molecule:blub-like flavoprotein; PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution
24 | d2ifaa1 |
| not modelled | 100.0 | 10 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
25 | c3k6hB_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58
26 | d2frea1 |
| not modelled | 100.0 | 17 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase
27 | c3koqC_ |
| not modelled | 100.0 | 25 | PDB header:oxidoreductase Chain: C: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution
28 | c3ge5A_ |
| not modelled | 100.0 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution
29 | c2wqfA_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:copper induced nitroreductase d; PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn
30 | c2r01A_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution
31 | c2i7hE_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: E: PDB Molecule:nitroreductase-like family protein; PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus
32 | c3g14B_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution
33 | c3gfaB_ |
| not modelled | 100.0 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (cd3205) from clostridium difficile 630 at 1.35 a resolution
34 | c3ek3A_ |
| not modelled | 100.0 | 16 | PDB header:flavoprotein Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution
35 | c3pxvD_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase Chain: D: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution
36 | c3kwkA_ |
| not modelled | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution
37 | c3m5kA_ |
| not modelled | 100.0 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution
38 | c3e39A_ |
| not modelled | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution
39 | c3e10B_ |
| not modelled | 100.0 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh oxidase; PDBTitle: crystal structure of putative nadh oxidase (np_348178.1)2 from clostridium acetobutylicum at 1.40 a resolution
40 | c3hoiA_ |
| not modelled | 100.0 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017; PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution
41 | c3hj9A_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution
42 | c3bm2B_ |
| not modelled | 100.0 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:protein ydja; PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor
43 | c3eo7A_ |
| not modelled | 99.9 | 19 | PDB header:flavoprotein Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution
44 | d1vkwa_ |
| not modelled | 99.8 | 20 | Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:Putative nitroreductase TM1586
45 | d1oeyj_ |
| not modelled | 47.2 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain
46 | d2oc6a1 |
| not modelled | 31.8 | 4 | Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like
47 | c3nr7A_ |
| not modelled | 31.3 | 17 | PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83
48 | d1ov9a_ |
| not modelled | 30.6 | 34 | Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins
49 | c3gyxJ_ |
| not modelled | 25.1 | 14 | PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
50 | d1fs2b1 |
| not modelled | 19.1 | 25 | Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like
51 | c1nexC_ |
| not modelled | 18.5 | 22 | PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
52 | c2p1nD_ |
| not modelled | 18.2 | 25 | PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
53 | d2ovra1 |
| not modelled | 17.8 | 25 | Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like
54 | c2ovqA_ |
| not modelled | 17.2 | 25 | PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
55 | d1nexa1 |
| not modelled | 17.1 | 23 | Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like
56 | d2i8da1 |
| not modelled | 15.3 | 11 | Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like
57 | d1gefa_ |
| not modelled | 14.0 | 13 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like
58 | c1jsuC_ |
| not modelled | 13.3 | 9 | PDB header:complex (transferase/cyclin/inhibitor) Chain: C: PDB Molecule:p27; PDBTitle: p27(kip1)/cyclin a/cdk2 complex
59 | c2ds2B_ |
| not modelled | 12.2 | 18 | PDB header:plant protein Chain: B: PDB Molecule:sweet protein mabinlin-2 chain b; PDBTitle: crystal structure of mabinlin ii
60 | c3pywA_ |
| not modelled | 11.9 | 23 | PDB header:structural protein Chain: A: PDB Molecule:s-layer protein sap; PDBTitle: the structure of the slh domain from b. anthracis surface array2 protein at 1.8a
61 | c2f9jP_ |
| not modelled | 10.9 | 15 | PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
62 | c3nznA_ |
| not modelled | 10.5 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
63 | c1pnbB_ |
| not modelled | 9.6 | 23 | PDB header:seed storage protein Chain: B: PDB Molecule:napin bnib; PDBTitle: structure of napin bnib, nmr, 10 structures
64 | d1vlia1 |
| not modelled | 8.4 | 4 | Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain
65 | c1h6zA_ |
| not modelled | 8.2 | 10 | PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei
66 | c3k4iC_ |
| not modelled | 8.1 | 14 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000
67 | d1ni8a_ |
| not modelled | 8.0 | 14 | Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins
68 | c1sm7A_ |
| not modelled | 7.6 | 19 | PDB header:plant protein Chain: A: PDB Molecule:recombinant ib pronapin; PDBTitle: solution structure of the recombinant pronapin precursor,2 bnib.
69 | d1vbga1 |
| not modelled | 7.4 | 9 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate phosphate dikinase, C-terminal domain
70 | c3dnjB_ |
| not modelled | 7.3 | 15 | PDB header:peptide binding protein Chain: B: PDB Molecule:atp-dependent clp protease adapter protein clps; PDBTitle: the structure of the caulobacter crescentus clps protease2 adaptor protein in complex with a n-end rule peptide
71 | c2o8kA_ |
| not modelled | 7.2 | 18 | PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
72 | d1wmib1 |
| not modelled | 7.2 | 18 | Fold:Non-globular all-alpha subunits of globular proteins Superfamily:RelB-like Family:RelB-like
73 | c2qh9B_ |
| not modelled | 6.9 | 24 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304
74 | d1h75a_ |
| not modelled | 6.0 | 10 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0