Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	F	S	P	P	L	Q	R	A	T	L	I	Q	R	Y	K	R	F	L	A	D	V	I	T	P	D	G	R	E	L	T	L	H	C	P	N	T	G	A	M	T	G	C	A	T	P	G	D	T	V	W	Y	S	T	S	D	N	T	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	K	Y	P	H	T	W	E	L	T	Q	S	Q	S	G	A	F	I	C	V	N	T	L	W	A	N	R	L	T	K	E	A	I	L	N	E	S	I	S	E	L	S	G	Y	S	S	L	K	S	E	V	K	Y	G	A	E	R	S	R	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	F	M	L	Q	A	D	S	R	P	D	C	Y	I	E	V	K	S	V	T	L	A	E	N	E	Q	G	Y	F	P	D	A	V	T	E	R	G	Q	K	H	L	R	E	L	M	S	V	A	A	E	G	Q	R	A	V	I	F	F	A	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence		L	H	S	A	I	T	R	F	S	P	A	R	H	I	D	E	K	Y	A	Q	L	L	S	E	A	Q	Q	R	G	V	E	I	L	A	Y	K	A	E	I	S	A	E	G	M	A	L	K	K	S	L	P	V	T	L
Secondary structure
SS confidence
Disorder																																																			?	?	?		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3i4o chain A Region: 8 - 57 Aligned: 46 Modelled: 50 Confidence: 91.6% Identity: 20% PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis Phyre2 PDB 1zn1 chain L Region: 17 - 54 Aligned: 35 Modelled: 38 Confidence: 87.1% Identity: 17% PDB header:biosynthetic/structural protein/rna Chain: L: PDB Molecule:30s ribosomal protein s12; PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-2 termination complex Phyre2 PDB 3fov chain A Region: 85 - 167 Aligned: 64 Modelled: 83 Confidence: 87.0% Identity: 28% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris Phyre2 PDB 2oqk chain A Region: 17 - 62 Aligned: 42 Modelled: 46 Confidence: 86.8% Identity: 31% PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a Phyre2 PDB 1xdo chain B Region: 150 - 212 Aligned: 53 Modelled: 63 Confidence: 85.1% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase Phyre2 PDB 2o8r chain A domain 4 Region: 150 - 212 Aligned: 53 Modelled: 63 Confidence: 84.2% Identity: 21% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1ah9 chain A Region: 8 - 62 Aligned: 52 Modelled: 55 Confidence: 83.8% Identity: 21% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2uub chain L domain 1 Region: 17 - 54 Aligned: 35 Modelled: 38 Confidence: 83.5% Identity: 26% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1d7q chain A Region: 17 - 75 Aligned: 53 Modelled: 59 Confidence: 83.0% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1xdp chain A domain 4 Region: 150 - 212 Aligned: 53 Modelled: 63 Confidence: 82.7% Identity: 19% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 2o8r chain A Region: 150 - 212 Aligned: 53 Modelled: 63 Confidence: 77.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis Phyre2 PDB 1jt8 chain A Region: 4 - 74 Aligned: 67 Modelled: 71 Confidence: 75.0% Identity: 13% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2qal chain L domain 1 Region: 17 - 54 Aligned: 35 Modelled: 38 Confidence: 74.9% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2zkq chain L Region: 17 - 64 Aligned: 47 Modelled: 48 Confidence: 72.0% Identity: 21% PDB header:ribosomal protein/rna Chain: L: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1h chain L Region: 17 - 54 Aligned: 37 Modelled: 38 Confidence: 70.3% Identity: 24% PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s23; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 1i94 chain L Region: 17 - 54 Aligned: 35 Modelled: 38 Confidence: 69.3% Identity: 26% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3m9b chain K Region: 4 - 53 Aligned: 48 Modelled: 50 Confidence: 68.6% Identity: 27% PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa Phyre2 PDB 2xzm chain L Region: 17 - 64 Aligned: 47 Modelled: 48 Confidence: 68.5% Identity: 15% PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s12; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 2vld chain A Region: 52 - 137 Aligned: 83 Modelled: 83 Confidence: 66.2% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi Phyre2 PDB 3m0z chain D Region: 157 - 211 Aligned: 45 Modelled: 55 Confidence: 62.1% Identity: 38% PDB header:lyase Chain: D: PDB Molecule:putative aldolase; PDBTitle: crystal structure of putative aldolase from klebsiella2 pneumoniae. Phyre2 1 c3i4oA_ 2 c1zn1L_ 3 c3fovA_ 4 c2oqkA_ 5 c1xdoB_ 6 d2o8ra4 7 d1ah9a_ 8 d2uubl1 9 d1d7qa_ 10 d1xdpa4 11 c2o8rA_ 12 d1jt8a_ 13 d2qall1 14 c2zkql_ 15 c1s1hL_ 16 d1i94l_ 17 c3m9bK_ 18 c2xzmL_ 19 c2vldA_ 20 c3m0zD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3i4oA_ 91.6 20 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 2 c1zn1L_ 87.1 17 PDB header:biosynthetic/structural protein/rna Chain: L: PDB Molecule:30s ribosomal protein s12; PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-2 termination complex 3 c3fovA_ 87.0 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 4 c2oqkA_ 86.8 31 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 5 c1xdoB_ 85.1 19 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 6 d2o8ra4 84.2 21 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 7 d1ah9a_ 83.8 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 8 d2uubl1 83.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 9 d1d7qa_ 83.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 10 d1xdpa4 82.7 19 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 11 c2o8rA_ 77.0 21 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 12 d1jt8a_ 75.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 13 d2qall1 74.9 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 c2zkql_ 72.0 21 PDB header:ribosomal protein/rna Chain: L: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 15 c1s1hL_ 70.3 24 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s23; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 16 d1i94l_ 69.3 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 17 c3m9bK_ 68.6 27 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 18 c2xzmL_ 68.5 15 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s12; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 19 c2vldA_ 66.2 11 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 20 c3m0zD_ 62.1 38 PDB header:lyase Chain: D: PDB Molecule:putative aldolase; PDBTitle: crystal structure of putative aldolase from klebsiella2 pneumoniae. 21 d1hr0w_ not modelled 59.7 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 c2a5hC_ not modelled 57.9 19 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 23 c2dgyA_ not modelled 53.5 12 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 24 d1v0wa2 not modelled 49.1 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 25 d1u0la1 not modelled 45.8 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 c3fp9E_ not modelled 43.3 26 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 27 d2ebfx2 not modelled 42.6 20 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:PMT domain-like 28 c1pk8D_ not modelled 41.6 19 PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp 29 d2ga5a1 not modelled 34.5 23 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 30 d1ekga_ not modelled 32.7 28 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 31 c3muxB_ not modelled 31.6 33 PDB header:lyase Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase; PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a 32 c3m6yA_ not modelled 29.3 31 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase; PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution. 33 c2qs7D_ not modelled 26.2 32 PDB header:oxidoreductase Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution 34 c2pd2A_ not modelled 25.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 35 d2p97a1 not modelled 25.6 10 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Ava3068-like 36 c1nm3B_ not modelled 24.2 21 PDB header:electron transport Chain: B: PDB Molecule:protein hi0572; PDBTitle: crystal structure of heamophilus influenza hybrid-prx5 37 d1i7na2 not modelled 23.5 15 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Synapsin C-terminal domain 38 d2cv4a1 not modelled 21.1 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 39 d1byra_ not modelled 20.6 24 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Nuclease 40 c1yjxD_ not modelled 20.1 19 PDB header:isomerase, hydrolase Chain: D: PDB Molecule:phosphoglycerate mutase 1; PDBTitle: crystal structure of human b type phosphoglycerate mutase 41 c3m9pA_ not modelled 19.6 13 PDB header:dna binding protein/dna Chain: A: PDB Molecule:male-specific lethal 3 homolog; PDBTitle: human msl3 chromodomain bound to dna and h4k20me1 peptide 42 c3pnxF_ not modelled 19.0 33 PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution 43 c2r2dC_ not modelled 18.9 15 PDB header:hydrolase Chain: C: PDB Molecule:zn-dependent hydrolases; PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens 44 c3s9xA_ not modelled 18.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101 45 d2rdea2 not modelled 18.5 11 Fold:Split barrel-like Superfamily:PilZ domain-like Family:PilZ domain-associated domain 46 d1e32a1 not modelled 17.7 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 47 d2okfa1 not modelled 17.2 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like 48 d1jx7a_ not modelled 17.2 13 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 49 d1xdpa3 not modelled 17.1 14 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 50 c3dnxA_ not modelled 16.9 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spo1766; PDBTitle: spo1766 protein of unknown function from silicibacter pomeroyi. 51 d2inba1 not modelled 16.4 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like 52 d1o12a1 not modelled 15.2 21 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 53 c3h43F_ not modelled 14.9 17 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 54 c3m9qA_ not modelled 14.8 9 PDB header:dna binding protein Chain: A: PDB Molecule:protein male-specific lethal-3; PDBTitle: drosophila msl3 chromodomain 55 c2br6A_ not modelled 14.7 16 PDB header:hydrolase Chain: A: PDB Molecule:aiia-like protein; PDBTitle: crystal structure of quorum-quenching n-acyl homoserine2 lactone lactonase 56 d1g94a2 not modelled 14.7 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 57 c3dcyA_ not modelled 13.7 19 PDB header:apoptosis regulator Chain: A: PDB Molecule:regulator protein; PDBTitle: crystal structure a tp53-induced glycolysis and apoptosis2 regulator protein from homo sapiens. 58 d2fqla1 not modelled 12.8 19 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 59 c3o27B_ not modelled 12.6 19 PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx 60 d1l1sa_ not modelled 11.5 20 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 61 c3tinA_ not modelled 11.5 33 PDB header:ligase Chain: A: PDB Molecule:ttl protein; PDBTitle: tubulin tyrosine ligase 62 d1pk8a2 not modelled 11.4 23 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Synapsin C-terminal domain 63 c2wg6L_ not modelled 11.4 16 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 64 c2fb6A_ not modelled 11.0 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron 65 c2wagA_ not modelled 10.7 11 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme, putative; PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis. 66 c2qpqC_ not modelled 10.5 13 PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis 67 d1qnia1 not modelled 10.3 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 68 c3e9eB_ not modelled 10.0 9 PDB header:hydrolase Chain: B: PDB Molecule:zgc:56074; PDBTitle: structure of full-length h11a mutant form of tigar from danio rerio 69 c3aj3A_ not modelled 10.0 13 PDB header:hydrolase Chain: A: PDB Molecule:4-pyridoxolactonase; PDBTitle: crystal structure of selenomethionine substituted 4-pyridoxolactonase2 from mesorhizobium loti 70 c3i38H_ not modelled 9.9 17 PDB header:chaperone Chain: H: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 71 c2rcnA_ not modelled 9.6 20 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 72 d2gjpa2 not modelled 9.3 6 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 73 d1ea9c3 not modelled 8.9 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 74 d1s98a_ not modelled 8.9 11 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 75 d1t62a_ not modelled 8.5 28 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical protein EF3133 76 c2vpmB_ not modelled 8.5 21 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 77 c1u0lB_ not modelled 8.4 16 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 78 d1nm3a2 not modelled 8.4 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 79 d1pkla1 not modelled 7.8 21 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 80 c1wn4A_ not modelled 7.7 36 PDB header:plant protein Chain: A: PDB Molecule:vontr protein; PDBTitle: nmr structure of vontr 81 d1ua7a2 not modelled 7.5 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 82 d1a3xa1 not modelled 7.4 27 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 83 d3e9va1 not modelled 7.3 18 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 84 c3dhuC_ not modelled 7.0 12 PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum 85 c2yv5A_ not modelled 7.0 18 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 86 c3bmwA_ not modelled 6.7 13 PDB header:transferase Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase; PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor 87 c1bplA_ not modelled 6.6 9 PDB header:glycosyltransferase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: glycosyltransferase 88 d1lkxa_ not modelled 6.4 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Motor proteins 89 d1zbsa2 not modelled 6.4 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 90 d1cw0a_ not modelled 6.3 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 91 c2zfnA_ not modelled 6.2 40 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: self-acetylation mediated histone h3 lysine 56 acetylation by rtt109 92 c3d35A_ not modelled 6.2 40 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: crystal structure of rtt109-ac-coa complex 93 d2z15a1 not modelled 5.9 14 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 94 c3i38L_ not modelled 5.9 18 PDB header:chaperone Chain: L: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 95 c3cz7A_ not modelled 5.9 40 PDB header:replication Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: molecular basis for the autoregulation of the protein acetyl2 transferase rtt109 96 c1i7nA_ not modelled 5.8 15 PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain 97 c1ud8A_ not modelled 5.8 0 PDB header:hydrolase Chain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion 98 c1sg3A_ not modelled 5.8 13 PDB header:hydrolase Chain: A: PDB Molecule:allantoicase; PDBTitle: structure of allantoicase 99 c2nw0B_ not modelled 5.7 17 PDB header:hydrolase Chain: B: PDB Molecule:plyb; PDBTitle: crystal structure of a lysin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0