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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1i7nA_

Fold library idPDB HeaderMoleculeTitle
c1i7nA_PDB header: neuropeptideChain: A: PDB Molecule: synapsin ii;PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain


Added to library: Tue Mar 16 13:02:45 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KAKVLLVVDEPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPD
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Known secondary structure (DSSP)


TTS
TT
TTT
GGG
TTS

SSSSS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence FVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY
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Known secondary structure (DSSP)
S



SSTT


TT

S
TSS
TTTS
B


 .........150.........160.........170.........180.........190.........200.........210
Sequence YPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGN
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Known secondary structure (DSSP) SSGGGGSS


SSSS
STTTT
ST




TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence NYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCS
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Known secondary structure (DSSP) SS
TTTS
S


SS


TTGGG

STTS

TT
 .........290.........300........
Sequence MPLIGEHQVEDRQLITDLVISKMNQLLS
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Known secondary structure (DSSP)



SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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