Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	P	T	I	E	L	I	C	G	H	R	S	I	R	H	F	T	D	E	P	I	S	E	A	Q	R	E	A	I	I	N	S	A	R	A	T	S	S	S	S	F	L	Q	C	S	S	I	I	R	I	T	D	K	A	L	R	E	E	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	T	L	T	G	G	Q	K	H	V	A	Q	A	A	E	F	W	V	F	C	A	D	F	N	R	H	L	Q	I	C	P	D	A	Q	L	G	L	A	E	Q	L	L	L	G	V	V	D	T	A	M	M	A	Q	N	A	L	I	A	A	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	L	G	L	G	G	V	Y	I	G	G	L	R	N	N	I	E	A	V	T	K	L	L	K	L	P	Q	H	V	L	P	L	F	G	L	C	L	G	W	P	A	D	N	P	D	L	K	P	R	L	P	A	S	I	L	V	H	E	N	S
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	Q	P	L	D	K	G	A	L	A	Q	Y	D	E	Q	L	A	E	Y	Y	L	T	R	G	S	N	N	R	R	D	T	W	S	D	H	I	R	R	T	I	I	K	E	S	R	P	F	I	L	D	Y	L	H	K	Q	G	W	A	T	R
Secondary structure
SS confidence
Disorder				?	?																			?	?	?	?	?	?	?	?																									?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1f5v chain A Region: 1 - 240 Aligned: 240 Modelled: 240 Confidence: 100.0% Identity: 100% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1zch chain A domain 1 Region: 1 - 240 Aligned: 240 Modelled: 240 Confidence: 100.0% Identity: 38% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1bkj chain A Region: 2 - 240 Aligned: 230 Modelled: 239 Confidence: 100.0% Identity: 52% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3n2s chain D Region: 3 - 239 Aligned: 237 Modelled: 237 Confidence: 100.0% Identity: 42% PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis Phyre2 PDB 3eof chain B Region: 6 - 238 Aligned: 232 Modelled: 232 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution Phyre2 PDB 3kwk chain A Region: 2 - 181 Aligned: 164 Modelled: 165 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution Phyre2 PDB 2isl chain B Region: 2 - 182 Aligned: 175 Modelled: 181 Confidence: 100.0% Identity: 22% PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form) Phyre2 PDB 3m5k chain A Region: 2 - 181 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution Phyre2 PDB 3e39 chain A Region: 2 - 185 Aligned: 171 Modelled: 184 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution Phyre2 PDB 3gag chain B Region: 2 - 178 Aligned: 175 Modelled: 177 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution Phyre2 PDB 2fre chain A domain 1 Region: 2 - 186 Aligned: 177 Modelled: 185 Confidence: 100.0% Identity: 18% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1nox chain A Region: 1 - 178 Aligned: 176 Modelled: 178 Confidence: 100.0% Identity: 25% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3gbh chain C Region: 1 - 178 Aligned: 176 Modelled: 178 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution Phyre2 PDB 2b67 chain A domain 1 Region: 2 - 178 Aligned: 175 Modelled: 176 Confidence: 100.0% Identity: 19% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1vfr chain A Region: 2 - 178 Aligned: 175 Modelled: 177 Confidence: 100.0% Identity: 15% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3bem chain A Region: 3 - 179 Aligned: 175 Modelled: 176 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution Phyre2 PDB 2ifa chain A domain 1 Region: 2 - 177 Aligned: 176 Modelled: 176 Confidence: 100.0% Identity: 13% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 2hay chain D Region: 2 - 178 Aligned: 175 Modelled: 177 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas Phyre2 PDB 3of4 chain A Region: 6 - 177 Aligned: 170 Modelled: 172 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution Phyre2 PDB 3e10 chain B Region: 6 - 181 Aligned: 164 Modelled: 163 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh oxidase; PDBTitle: crystal structure of putative nadh oxidase (np_348178.1)2 from clostridium acetobutylicum at 1.40 a resolution Phyre2 1 d1f5va_ 2 d1zcha1 3 d1bkja_ 4 c3n2sD_ 5 c3eofB_ 6 c3kwkA_ 7 c2islB_ 8 c3m5kA_ 9 c3e39A_ 10 c3gagB_ 11 d2frea1 12 d1noxa_ 13 c3gbhC_ 14 d2b67a1 15 d1vfra_ 16 c3bemA_ 17 d2ifaa1 18 c2hayD_ 19 c3of4A_ 20 c3e10B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1f5va_ 100.0 100 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 2 d1zcha1 100.0 38 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 3 d1bkja_ 100.0 52 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 4 c3n2sD_ 100.0 42 PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis 5 c3eofB_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution 6 c3kwkA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution 7 c2islB_ 100.0 22 PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form) 8 c3m5kA_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution 9 c3e39A_ 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution 10 c3gagB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution 11 d2frea1 100.0 18 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 12 d1noxa_ 100.0 25 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 13 c3gbhC_ 100.0 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution 14 d2b67a1 100.0 19 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 15 d1vfra_ 100.0 15 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 16 c3bemA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution 17 d2ifaa1 100.0 13 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 18 c2hayD_ 100.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas 19 c3of4A_ 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution 20 c3e10B_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh oxidase; PDBTitle: crystal structure of putative nadh oxidase (np_348178.1)2 from clostridium acetobutylicum at 1.40 a resolution 21 c2wqfA_ not modelled 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:copper induced nitroreductase d; PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn 22 d1ywqa1 not modelled 100.0 17 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 23 c3ge6B_ not modelled 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution 24 c3gr3B_ not modelled 100.0 24 PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution 25 c3ge5A_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution 26 c3g14B_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution 27 d1ykia1 not modelled 100.0 23 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 28 d1kqba_ not modelled 100.0 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 29 c3koqC_ not modelled 100.0 22 PDB header:oxidoreductase Chain: C: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution 30 c2wzvB_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis 31 c2r01A_ not modelled 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution 32 c3eo8A_ not modelled 100.0 16 PDB header:flavoprotein Chain: A: PDB Molecule:blub-like flavoprotein; PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution 33 c2i7hE_ not modelled 100.0 19 PDB header:oxidoreductase Chain: E: PDB Molecule:nitroreductase-like family protein; PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus 34 c3k6hB_ not modelled 100.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58 35 c3pxvD_ not modelled 100.0 24 PDB header:oxidoreductase Chain: D: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution 36 c2h0uA_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori 37 c3ek3A_ not modelled 100.0 20 PDB header:flavoprotein Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution 38 c3gh8A_ not modelled 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit) 39 c3gfaB_ not modelled 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (cd3205) from clostridium difficile 630 at 1.35 a resolution 40 c3hj9A_ not modelled 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution 41 c3bm2B_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:protein ydja; PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor 42 c3hoiA_ not modelled 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017; PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution 43 c3eo7A_ not modelled 100.0 23 PDB header:flavoprotein Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution 44 d1vkwa_ not modelled 99.9 18 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:Putative nitroreductase TM1586 45 c3k4iC_ not modelled 54.3 23 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000 46 d1vi4a_ not modelled 38.9 24 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 47 c3c8oB_ not modelled 36.0 15 PDB header:hydrolase regulator Chain: B: PDB Molecule:regulator of ribonuclease activity a; PDBTitle: the crystal structure of rraa from pao1 48 c2c5qE_ not modelled 35.6 21 PDB header:structural genomics,unknown function Chain: E: PDB Molecule:rraa-like protein yer010c; PDBTitle: crystal structure of yeast yer010cp 49 d1nxja_ not modelled 34.6 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 50 c1nxjA_ not modelled 34.6 18 PDB header:unknown function Chain: A: PDB Molecule:probable s-adenosylmethionine:2- PDBTitle: structure of rv3853 from mycobacterium tuberculosis 51 c2pcnA_ not modelled 33.7 21 PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine:2-demethylmenaquinone PDBTitle: crystal structure of s-adenosylmethionine: 2-dimethylmenaquinone2 methyltransferase (gk_1813) from geobacillus kaustophilus hta426 52 d1q5xa_ not modelled 33.1 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 53 d1j3la_ not modelled 32.1 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 54 d1cr6a1 not modelled 29.6 14 Fold:HAD-like Superfamily:HAD-like Family:YihX-like 55 d1oeyj_ not modelled 29.1 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 56 d2paga1 not modelled 18.1 20 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 57 d2oc6a1 not modelled 17.6 13 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 58 d1gz0a2 not modelled 17.2 9 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 59 d1zd3a1 not modelled 17.2 17 Fold:HAD-like Superfamily:HAD-like Family:YihX-like 60 c3nojA_ not modelled 16.4 3 PDB header:lyase Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida 61 d1ni8a_ not modelled 16.2 10 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 62 c3gyxJ_ not modelled 15.1 14 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 63 c3nr7A_ not modelled 14.2 13 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83 64 c3ed5A_ not modelled 12.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yfnb; PDBTitle: the crystal structure of yfnb from bacillus subtilis subsp. subtilis2 str. 168 65 d1e7la1 not modelled 12.4 4 Fold:LEM/SAP HeH motif Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains Family:Recombination endonuclease VII, C-terminal and dimerization domains 66 c2i6xA_ not modelled 12.0 34 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like family; PDBTitle: the structure of a predicted had-like family hydrolase from2 porphyromonas gingivalis. 67 d2ovra1 not modelled 11.9 11 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 68 d1gz0f2 not modelled 11.6 19 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 69 d1lr1a_ not modelled 11.3 10 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 70 d1nexa1 not modelled 11.0 13 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 71 c3p8bB_ not modelled 11.0 16 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 72 d1ng6a_ not modelled 10.0 24 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/YqeY domain 73 c1cr6A_ not modelled 10.0 13 PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor 74 d2ogga1 not modelled 9.9 15 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 75 d1fs2b1 not modelled 9.9 14 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 76 d1i1qb_ not modelled 9.9 26 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 77 d2a2pa1 not modelled 9.6 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 78 c1iq8B_ not modelled 9.3 23 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 79 d2fi1a1 not modelled 9.2 19 Fold:HAD-like Superfamily:HAD-like Family:Phosphonoacetaldehyde hydrolase-like 80 d2i8da1 not modelled 8.8 19 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 81 c1l9xA_ not modelled 8.8 24 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 82 d1l9xa_ not modelled 8.8 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 83 d1xuba2 not modelled 8.6 16 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 84 c1d0rA_ not modelled 8.5 12 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 85 d1itza2 not modelled 8.1 10 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 86 d1i7qb_ not modelled 7.7 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 87 d1f2va_ not modelled 7.5 28 Fold:Flavodoxin-like Superfamily:Precorrin-8X methylmutase CbiC/CobH Family:Precorrin-8X methylmutase CbiC/CobH 88 d1ov9a_ not modelled 7.4 17 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 89 d2i5ha1 not modelled 7.3 23 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 90 c2i5hA_ not modelled 7.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 91 c2ds2B_ not modelled 6.9 14 PDB header:plant protein Chain: B: PDB Molecule:sweet protein mabinlin-2 chain b; PDBTitle: crystal structure of mabinlin ii 92 c2p1nD_ not modelled 6.4 11 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 93 c1vcnA_ not modelled 6.2 29 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 94 d1nlna_ not modelled 6.2 25 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 95 c3dnjB_ not modelled 6.1 12 PDB header:peptide binding protein Chain: B: PDB Molecule:atp-dependent clp protease adapter protein clps; PDBTitle: the structure of the caulobacter crescentus clps protease2 adaptor protein in complex with a n-end rule peptide 96 c3l5kA_ not modelled 6.0 24 PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase domain- PDBTitle: the crystal structure of human haloacid dehalogenase-like2 hydrolase domain containing 1a (hdhd1a) 97 c1jrjA_ not modelled 5.9 12 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 98 d1ny8a_ not modelled 5.8 11 Fold:Alpha-lytic protease prodomain-like Superfamily:BolA-like Family:BolA-like 99 d1ou0a_ not modelled 5.7 22 Fold:Flavodoxin-like Superfamily:Precorrin-8X methylmutase CbiC/CobH Family:Precorrin-8X methylmutase CbiC/CobH

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0