PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ed5A_

Fold library id	PDB Header	Molecule	Title
c3ed5A_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: yfnb;	PDBTitle: the crystal structure of yfnb from bacillus subtilis subsp.2 subtilis str. 168

Links to external resources
Added to library: Tue Mar 16 12:47:40 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X K R Y R T L L F D V D D T I L D F Q A A E A L A L R L L F E D Q N I P L T N D X K A Q Y K T I N Q G L W R A F E E G K X T R D E V V N T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T T B
T T
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F S A L L K E Y G Y E A D G A L L E Q K Y R R F L E E G H Q L I D G A F D L I S N L Q Q Q F D L Y I V T N G V S H T Q Y K R L R D S G L F P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
B
T T T T S
S
T T
G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F F K D I F V S E D T G F Q K P X K E Y F N Y V F E R I P Q F S A E H T L I I G D S L T A D I K G G Q L A G L D T C W X N P D X K P N V P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
S G G G T T S
T T
T S T T
G G G S
T T T T T T
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence I I P T Y E I R K L E E L Y H I L N I E N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S G G G T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	K	R	Y	R	T	L	L	F	D	V	D	D	T	I	L	D	F	Q	A	A	E	A	L	A	L	R	L	L	F	E	D	Q	N	I	P	L	T	N	D	X	K	A	Q	Y	K	T	I	N	Q	G	L	W	R	A	F	E	E	G	K	X	T	R	D	E	V	V	N	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												B	T	T	T	B																	T	T																								T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	S	A	L	L	K	E	Y	G	Y	E	A	D	G	A	L	L	E	Q	K	Y	R	R	F	L	E	E	G	H	Q	L	I	D	G	A	F	D	L	I	S	N	L	Q	Q	Q	F	D	L	Y	I	V	T	N	G	V	S	H	T	Q	Y	K	R	L	R	D	S	G	L	F	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T																	T	T				B		T	T										T	T	S								S												T	T		G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	F	K	D	I	F	V	S	E	D	T	G	F	Q	K	P	X	K	E	Y	F	N	Y	V	F	E	R	I	P	Q	F	S	A	E	H	T	L	I	I	G	D	S	L	T	A	D	I	K	G	G	Q	L	A	G	L	D	T	C	W	X	N	P	D	X	K	P	N	V	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G		S					G	G	G	T	T	S		T	T											T	S	T	T			G	G	G						S		T	T	T	T							T	T								T	T					T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	I	I	P	T	Y	E	I	R	K	L	E	E	L	Y	H	I	L	N	I	E	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S				S	S	G	G	G						T