Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	G	T	L	L	A	F	D	F	G	T	K	S	I	G	V	A	V	G	Q	R	I	T	G	T	A	R	P	L	P	A	I	K	A	Q	D	G	T	P	D	W	N	I	I	E	R	L	L	K	E	W	Q	P	D	E	I	I	V	G
Secondary structure
SS confidence
Disorder		?	?	?	?																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	P	L	N	M	D	G	T	E	Q	P	L	T	A	R	A	R	K	F	A	N	R	I	H	G	R	F	G	V	E	V	K	L	H	D	E	R	L	S	T	V	E	A	R	S	G	L	F	E	Q	G	G	Y	R	A	L	N	K	G	K
Secondary structure
SS confidence
Disorder									?	?	?																																								?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Sequence		V	D	S	A	S	A	V	I	I	L	E	S	Y	F	E	Q	G	Y
Secondary structure
SS confidence
Disorder																?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nu0 chain A Region: 1 - 138 Aligned: 131 Modelled: 137 Confidence: 100.0% Identity: 97% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 PDB 1vhx chain A Region: 4 - 136 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 32% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 PDB 1iv0 chain A Region: 4 - 101 Aligned: 97 Modelled: 98 Confidence: 100.0% Identity: 28% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 PDB 3bzk chain A domain 5 Region: 4 - 101 Aligned: 89 Modelled: 94 Confidence: 99.2% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Tex RuvX-like domain-like Phyre2 PDB 2oce chain A Region: 2 - 101 Aligned: 92 Modelled: 97 Confidence: 98.8% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa Phyre2 PDB 1hjr chain A Region: 5 - 128 Aligned: 114 Modelled: 124 Confidence: 98.3% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: RuvC resolvase Phyre2 PDB 3psf chain A Region: 4 - 101 Aligned: 91 Modelled: 98 Confidence: 98.1% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) Phyre2 PDB 3psi chain A Region: 4 - 101 Aligned: 90 Modelled: 98 Confidence: 98.0% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) Phyre2 PDB 1xc3 chain A Region: 5 - 107 Aligned: 102 Modelled: 103 Confidence: 97.4% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis Phyre2 PDB 2gup chain A domain 1 Region: 3 - 107 Aligned: 104 Modelled: 104 Confidence: 97.3% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 1xc3 chain A domain 1 Region: 5 - 107 Aligned: 102 Modelled: 103 Confidence: 97.1% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 2aa4 chain A domain 1 Region: 4 - 107 Aligned: 103 Modelled: 104 Confidence: 96.9% Identity: 10% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 2hoe chain A domain 3 Region: 2 - 107 Aligned: 106 Modelled: 106 Confidence: 96.9% Identity: 13% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 2ap1 chain A domain 2 Region: 5 - 105 Aligned: 101 Modelled: 101 Confidence: 96.8% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 3htv chain A Region: 3 - 106 Aligned: 104 Modelled: 104 Confidence: 96.5% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution Phyre2 PDB 1z6r chain A domain 2 Region: 2 - 107 Aligned: 106 Modelled: 106 Confidence: 96.4% Identity: 13% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 1z05 chain A domain 3 Region: 4 - 107 Aligned: 104 Modelled: 104 Confidence: 96.3% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 1woq chain B Region: 2 - 107 Aligned: 105 Modelled: 106 Confidence: 96.0% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution Phyre2 PDB 1okj chain A domain 1 Region: 4 - 95 Aligned: 86 Modelled: 92 Confidence: 95.9% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 1jce chain A domain 1 Region: 6 - 96 Aligned: 84 Modelled: 91 Confidence: 95.8% Identity: 21% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 1 d1nu0a_ 2 d1vhxa_ 3 d1iv0a_ 4 d3bzka5 5 c2oceA_ 6 d1hjra_ 7 c3psfA_ 8 c3psiA_ 9 c1xc3A_ 10 d2gupa1 11 d1xc3a1 12 d2aa4a1 13 d2hoea3 14 d2ap1a2 15 c3htvA_ 16 d1z6ra2 17 d1z05a3 18 c1woqB_ 19 d1okja1 20 d1jcea1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nu0a_ 100.0 97 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 2 d1vhxa_ 100.0 32 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 3 d1iv0a_ 100.0 28 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 4 d3bzka5 99.2 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 5 c2oceA_ 98.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 6 d1hjra_ 98.3 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 7 c3psfA_ 98.1 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 8 c3psiA_ 98.0 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 9 c1xc3A_ 97.4 13 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 10 d2gupa1 97.3 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 11 d1xc3a1 97.1 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 12 d2aa4a1 96.9 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 13 d2hoea3 96.9 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 14 d2ap1a2 96.8 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 15 c3htvA_ 96.5 12 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 16 d1z6ra2 96.4 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 17 d1z05a3 96.3 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 18 c1woqB_ 96.0 12 PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution 19 d1okja1 95.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 20 d1jcea1 95.8 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 21 d1woqa1 not modelled 95.8 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 22 c2e2pA_ not modelled 95.7 9 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 23 c1z6rC_ not modelled 95.7 13 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 24 c1okjB_ not modelled 95.5 14 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protease yeaz; PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma" 25 d1sz2a1 not modelled 95.5 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 26 c3eo3B_ not modelled 95.2 17 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 27 c3r6mD_ not modelled 95.2 16 PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz 28 c2ch5D_ not modelled 95.1 7 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 29 c2hoeA_ not modelled 95.0 12 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 30 c2gupA_ not modelled 94.7 15 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 31 c2qm1D_ not modelled 94.7 14 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 32 c1z05A_ not modelled 94.6 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 33 c3vgkB_ not modelled 94.6 13 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 34 d1q18a1 not modelled 94.5 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 35 c2ap1A_ not modelled 94.5 14 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 36 c3mcpA_ not modelled 94.5 17 PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution 37 c3r8eA_ not modelled 93.5 10 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 38 d1bupa1 not modelled 93.3 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 39 d2a6aa1 not modelled 91.2 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 40 c3h1qB_ not modelled 91.0 17 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 41 c3lm2B_ not modelled 90.5 18 PDB header:transferase Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution 42 d2ewsa1 not modelled 90.4 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 43 d1dkgd1 not modelled 90.4 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 44 d2e8aa1 not modelled 89.9 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 45 c1hpmA_ not modelled 89.8 33 PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site 46 d2ch5a2 not modelled 89.5 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 47 c2a6aB_ not modelled 89.1 14 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution 48 c2v7zA_ not modelled 88.8 32 PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state 49 c3iucC_ not modelled 88.4 36 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp 50 c2aa4B_ not modelled 88.2 12 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 51 d2nu7b1 not modelled 87.3 16 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 52 d3bexa1 not modelled 86.6 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 53 c1dkgD_ not modelled 86.0 29 PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 54 c2v7yA_ not modelled 85.7 35 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 55 d1t6ca1 not modelled 82.1 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 56 d1huxa_ not modelled 81.5 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 57 c3bf1C_ not modelled 81.1 14 PDB header:transferase Chain: C: PDB Molecule:type iii pantothenate kinase; PDBTitle: type iii pantothenate kinase from thermotoga maritima2 complexed with pantothenate and adp 58 c3djcA_ not modelled 80.6 16 PDB header:transferase Chain: A: PDB Molecule:type iii pantothenate kinase; PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila 59 c1zc6A_ not modelled 80.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 60 c1jcgA_ not modelled 80.3 21 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 61 c2nu9E_ not modelled 77.8 16 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 62 c3gg4B_ not modelled 76.9 18 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 63 c2khoA_ not modelled 74.9 30 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate 64 c1x7fA_ not modelled 73.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:outer surface protein; PDBTitle: crystal structure of an uncharacterized b. cereus protein 65 d1yoba1 not modelled 72.6 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 66 c2q2rA_ not modelled 72.4 12 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 67 c2w40C_ not modelled 70.6 20 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 68 c2ychA_ not modelled 70.6 14 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 69 d2p3ra1 not modelled 70.5 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 70 d1zc6a1 not modelled 70.1 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 71 d2fcra_ not modelled 68.2 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 72 c3d2fC_ not modelled 66.7 24 PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 73 d1mo6a1 not modelled 64.2 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 74 c3fg9B_ not modelled 64.0 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 75 c3dloC_ not modelled 63.3 11 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus 76 d1oboa_ not modelled 62.6 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 77 c3ifrB_ not modelled 60.2 17 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 78 c2zf5O_ not modelled 59.8 22 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 79 d2f9wa2 not modelled 59.2 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 80 c1xupO_ not modelled 58.6 19 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 81 d1eucb1 not modelled 58.5 14 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 82 d1tq8a_ not modelled 58.4 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 83 d1czna_ not modelled 58.4 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 84 c3fh0A_ not modelled 57.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase 85 c3cerD_ not modelled 57.5 17 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:possible exopolyphosphatase-like protein; PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13 86 c3g25B_ not modelled 56.9 19 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 87 c2floA_ not modelled 56.9 16 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7 88 d1u6za2 not modelled 56.2 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 89 c1t6dB_ not modelled 55.5 17 PDB header:hydrolase Chain: B: PDB Molecule:exopolyphosphatase; PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant 90 c3mdqA_ not modelled 55.4 17 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution 91 c2wc1A_ not modelled 55.2 15 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 92 c3flcX_ not modelled 55.0 19 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 93 c3gbtA_ not modelled 55.0 8 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 94 c2cgkB_ not modelled 53.2 24 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 95 d2z3va1 not modelled 51.9 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 96 c2pfsA_ not modelled 51.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 97 d1qd1a1 not modelled 51.6 29 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 98 c1mwmA_ not modelled 50.7 18 PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form 99 c2dpnB_ not modelled 50.1 28 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 100 c3hi0B_ not modelled 49.3 20 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 101 c3hgmD_ not modelled 49.2 20 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 102 c3ezwD_ not modelled 48.7 26 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 103 c2h3gX_ not modelled 48.3 12 PDB header:biosynthetic protein Chain: X: PDB Molecule:biosynthetic protein; PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis 104 d2i7pa2 not modelled 48.0 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 105 c3en9B_ not modelled 47.5 13 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 106 c1e4gT_ not modelled 47.1 15 PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima 107 c3agjB_ not modelled 46.7 14 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 108 c3agjD_ not modelled 46.7 14 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 109 c3hz6A_ not modelled 45.9 22 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 110 c1qd1A_ not modelled 45.9 29 PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. 111 c3i8bA_ not modelled 45.4 20 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 112 c1glbG_ not modelled 43.5 26 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 113 d1b74a1 not modelled 42.7 23 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 114 c2d4wA_ not modelled 42.4 21 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 115 d1nmpa_ not modelled 39.5 15 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 116 d2qi2a2 not modelled 39.4 16 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:ERF1/Dom34 middle domain-like 117 c3n2qA_ not modelled 36.7 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sex pheromone staph-cam373; PDBTitle: crystal structure of sex pheromone staph-cam373 precursor 118 c3mcaB_ not modelled 36.0 8 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 119 c2nlxA_ not modelled 35.9 30 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 120 c3obyB_ not modelled 35.7 10 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0