Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	E	N	A	V	L	Q	L	R	A	E	R	I	A	R	A	T	R	P	F	L	A	R	G	N	R	V	R	R	C	Q	R	C	L	L	P	E	K	L	C	L	C	S	T	I	T	P	A	Q	A	K	S	R	F	C	L	L	M	F
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?	?	?	?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	T	E	P	M	K	P	S	N	T	G	R	L	I	A	D	I	L	P	D	T	V	A	F	Q	W	S	R	T	E	P	S	Q	D	L	L	E	L	V	Q	N	P	D	Y	Q	P	M	V	V	F	P	A	S	Y	A	D	E	Q	R	E
Secondary structure
SS confidence
Disorder				?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	I	F	T	P	P	A	G	K	P	P	L	F	I	M	L	D	G	T	W	P	E	A	R	K	M	F	R	K	S	P	Y	L	D	N	L	P	V	I	S	V	D	L	S	R	L	S	A	Y	R	L	R	E	A	Q	A	E	G	Q	Y
Secondary structure
SS confidence
Disorder			?	?	?	?	?																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence		C	T	A	E	V	A	I	A	L	L	D	M	A	G	D	T	G	A	A	A	G	L	G	E	H	F	T	R	F	K	T	R	Y	L	A	G	K	T	Q	H	L	G	S	I	T	A	E	Q	L	E	S	V
Secondary structure
SS confidence
Disorder																		?	?																			?	?	?	?	?	?	?	?	?					?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1rk8 chain C Region: 137 - 145 Aligned: 9 Modelled: 9 Confidence: 53.4% Identity: 67% PDB header:translation Chain: C: PDB Molecule:within the bgcn gene intron protein; PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex Phyre2 PDB 1rk8 chain C Region: 137 - 145 Aligned: 9 Modelled: 9 Confidence: 53.4% Identity: 67% Fold: WW domain-like Superfamily: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain Family: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain Phyre2 PDB 1xrx chain A domain 1 Region: 207 - 232 Aligned: 26 Modelled: 25 Confidence: 40.6% Identity: 23% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: SeqA N-terminal domain-like Phyre2 PDB 1xrx chain D Region: 207 - 232 Aligned: 26 Modelled: 25 Confidence: 40.6% Identity: 23% PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein Phyre2 PDB 3mop chain C Region: 181 - 220 Aligned: 40 Modelled: 40 Confidence: 32.1% Identity: 20% PDB header:signaling protein, immune system Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88; PDBTitle: the ternary death domain complex of myd88, irak4, and irak2 Phyre2 PDB 3c6f chain D Region: 97 - 142 Aligned: 46 Modelled: 46 Confidence: 30.7% Identity: 7% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis Phyre2 PDB 2dof chain A domain 1 Region: 137 - 159 Aligned: 23 Modelled: 23 Confidence: 22.5% Identity: 22% Fold: Another 3-helical bundle Superfamily: FF domain Family: FF domain Phyre2 PDB 3bvo chain A Region: 29 - 52 Aligned: 24 Modelled: 24 Confidence: 22.3% Identity: 29% PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb Phyre2 PDB 1ffy chain A domain 1 Region: 26 - 36 Aligned: 11 Modelled: 11 Confidence: 22.2% Identity: 27% Fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Phyre2 PDB 2dar chain A domain 2 Region: 25 - 37 Aligned: 13 Modelled: 13 Confidence: 20.0% Identity: 31% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1yud chain A domain 1 Region: 106 - 143 Aligned: 38 Modelled: 38 Confidence: 18.2% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YML079-like Phyre2 PDB 3lzz chain B Region: 107 - 141 Aligned: 35 Modelled: 35 Confidence: 15.5% Identity: 6% PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structures of cupin superfamily bbduf985 from branchiostoma2 belcheri tsingtauense in apo and gdp-bound forms Phyre2 PDB 1esz chain A Region: 129 - 159 Aligned: 31 Modelled: 31 Confidence: 15.2% Identity: 13% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Periplasmic ferric siderophore binding protein FhuD Phyre2 PDB 2apo chain B domain 1 Region: 27 - 55 Aligned: 29 Modelled: 27 Confidence: 14.8% Identity: 28% Fold: Rubredoxin-like Superfamily: Nop10-like SnoRNP Family: Nucleolar RNA-binding protein Nop10-like Phyre2 PDB 2kiq chain A Region: 137 - 157 Aligned: 21 Modelled: 21 Confidence: 14.8% Identity: 14% PDB header:transcription regulator Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150 Phyre2 PDB 2knq chain A Region: 107 - 141 Aligned: 35 Modelled: 35 Confidence: 13.4% Identity: 20% PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein h; PDBTitle: solution structure of e.coli gsph Phyre2 PDB 1ctl chain A domain 1 Region: 25 - 40 Aligned: 15 Modelled: 16 Confidence: 13.3% Identity: 27% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 2vkv chain A domain 2 Region: 137 - 216 Aligned: 75 Modelled: 75 Confidence: 13.3% Identity: 12% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 1iml chain A domain 1 Region: 29 - 40 Aligned: 12 Modelled: 12 Confidence: 13.1% Identity: 17% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1ibi chain A domain 1 Region: 28 - 35 Aligned: 8 Modelled: 8 Confidence: 12.1% Identity: 38% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 1 c1rk8C_ 2 d1rk8c_ 3 d1xrxa1 4 c1xrxD_ 5 c3mopC_ 6 c3c6fD_ 7 d2dofa1 8 c3bvoA_ 9 d1ffya1 10 d2dara2 11 d1yuda1 12 c3lzzB_ 13 d1esza_ 14 d2apob1 15 c2kiqA_ 16 c2knqA_ 17 d1ctla1 18 d2vkva2 19 d1imla1 20 d1ibia1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1rk8C_ 53.4 67 PDB header:translation Chain: C: PDB Molecule:within the bgcn gene intron protein; PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex 2 d1rk8c_ 53.4 67 Fold:WW domain-like Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain 3 d1xrxa1 40.6 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 4 c1xrxD_ 40.6 23 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 5 c3mopC_ 32.1 20 PDB header:signaling protein, immune system Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88; PDBTitle: the ternary death domain complex of myd88, irak4, and irak2 6 c3c6fD_ 30.7 7 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis 7 d2dofa1 22.5 22 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 8 c3bvoA_ 22.3 29 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 9 d1ffya1 22.2 27 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 10 d2dara2 20.0 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 11 d1yuda1 18.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YML079-like 12 c3lzzB_ 15.5 6 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structures of cupin superfamily bbduf985 from branchiostoma2 belcheri tsingtauense in apo and gdp-bound forms 13 d1esza_ 15.2 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Periplasmic ferric siderophore binding protein FhuD 14 d2apob1 14.8 28 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 15 c2kiqA_ 14.8 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150 16 c2knqA_ 13.4 20 PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein h; PDBTitle: solution structure of e.coli gsph 17 d1ctla1 13.3 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 18 d2vkva2 13.3 12 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 19 d1imla1 13.1 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 20 d1ibia1 12.1 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 21 c2elpA_ not modelled 11.8 20 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 22 c2a7yA_ not modelled 11.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359; PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis 23 d2a7ya1 not modelled 11.6 25 Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Rv2302-like 24 d2etva1 not modelled 11.2 6 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 25 d2ey4e1 not modelled 10.4 31 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 26 c2yetB_ not modelled 10.2 18 PDB header:hydrolase Chain: B: PDB Molecule:gh61 isozyme a; PDBTitle: thermoascus gh61 isozyme a 27 c2nrrA_ not modelled 10.0 20 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc 28 c2kfdA_ not modelled 10.0 32 PDB header:nuclear protein Chain: A: PDB Molecule:pre-mrna-processing protein prp40; PDBTitle: prp40 ff4 domain 29 d1v95a_ not modelled 9.7 8 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 30 d2afaa1 not modelled 9.5 7 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 31 d1zbdb_ not modelled 9.1 19 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 32 c2iy3A_ not modelled 9.0 11 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 33 c2rr7A_ not modelled 8.9 36 PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain 9; PDBTitle: microtubule binding domain of dynein-c 34 d2ewoa1 not modelled 8.8 12 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 35 c3n43B_ not modelled 8.6 58 PDB header:viral protein Chain: B: PDB Molecule:e2 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus. 36 c2hw4A_ not modelled 8.5 21 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 37 d2cu8a1 not modelled 8.4 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 c2xfbI_ not modelled 8.4 58 PDB header:virus Chain: I: PDB Molecule:e2 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map 39 c3mhsE_ not modelled 8.4 40 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 40 d1lf6a2 not modelled 8.3 23 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 41 c2k85A_ not modelled 8.2 16 PDB header:protein binding Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: p190-a rhogap ff1 domain 42 c2iv0A_ not modelled 8.2 9 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers 43 c2hfvA_ not modelled 8.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 44 c1qu2A_ not modelled 7.8 27 PDB header:ligase/rna Chain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin 45 d1xo1a2 not modelled 7.6 27 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 46 d1ulva4 not modelled 7.6 25 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 47 c3errB_ not modelled 7.4 10 PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase 48 d1kl7a_ not modelled 7.4 12 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 49 c3muwU_ not modelled 7.1 42 PDB header:virus Chain: U: PDB Molecule:structural polyprotein; PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus 50 d2doea1 not modelled 6.9 10 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 51 c2ofqA_ not modelled 6.9 14 PDB header:protein transport/protein transport Chain: A: PDB Molecule:trao; PDBTitle: nmr solution structure of a complex between the virb9/virb72 interaction domains of the pkm101 type iv secretion system 52 d1ryqa_ not modelled 6.9 15 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 53 c3k7bA_ not modelled 6.7 40 PDB header:viral protein Chain: A: PDB Molecule:protein a33; PDBTitle: the structure of the poxvirus a33 protein reveals a dimer of unique c-2 type lectin-like domains. 54 c3kepA_ not modelled 6.7 15 PDB header:protein transport, rna binding protein Chain: A: PDB Molecule:nucleoporin nup145; PDBTitle: crystal structure of the autoproteolytic domain from the2 nuclear pore complex component nup145 from saccharomyces3 cerevisiae 55 d1pn0a2 not modelled 6.6 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 56 c3chxG_ not modelled 6.5 67 PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 57 c3n40P_ not modelled 6.5 58 PDB header:viral protein Chain: P: PDB Molecule:p62 envelope glycoprotein; PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus. 58 c2jyvA_ not modelled 6.2 57 PDB header:cytokine Chain: A: PDB Molecule:granulin-2; PDBTitle: human granulin f 59 d1omza_ not modelled 6.1 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 60 d2hfva1 not modelled 6.0 16 Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like 61 d1bpoa1 not modelled 6.0 20 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin heavy-chain linker domain 62 c1yewC_ not modelled 5.9 57 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 63 c3g9yA_ not modelled 5.9 29 PDB header:transcription/rna Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2; PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa 64 d2gnra1 not modelled 5.8 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 65 c2xzn5_ not modelled 5.7 36 PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein s26e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 66 d2cqna1 not modelled 5.7 29 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 67 c2nvuB_ not modelled 5.6 29 PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex 68 d1j3kc_ not modelled 5.5 7 Fold:Thymidylate synthase/dCMP hydroxymethylase Superfamily:Thymidylate synthase/dCMP hydroxymethylase Family:Thymidylate synthase/dCMP hydroxymethylase 69 d3blza1 not modelled 5.3 20 Fold:Cystatin-like Superfamily:NTF2-like Family:Sbal0622-like 70 c3eabD_ not modelled 5.3 23 PDB header:cell cycle Chain: D: PDB Molecule:spastin; PDBTitle: crystal structure of spastin mit in complex with escrt iii 71 c1ko6A_ not modelled 5.3 18 PDB header:transferase Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of c-terminal autoproteolytic domain of2 nucleoporin nup98 72 d1aa7a_ not modelled 5.1 26 Fold:Influenza virus matrix protein M1 Superfamily:Influenza virus matrix protein M1 Family:Influenza virus matrix protein M1 73 d1vkpa_ not modelled 5.1 17 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0