Phyre 2 alignment of Q47319 with c2knqA_

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Job Description | Q47319
Confidence | 13.36% | Date | Thu Jan 5 12:36:46 GMT 2012
Rank | 16 | Aligned Residues | 35
% Identity | 20% | Template | c2knqA_
PDB info | PDB header:protein transport | Chain: A: PDB Molecule:general secretion pathway protein h; | PDBTitle: solution structure of e.coli gsph
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 107 | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | M | V | V | F | P | A | S | Y | A | D | E | Q | R | E | V | I | F | T | P | P | A | G | K | P | P | L | F | I | M | L | D | G | T | W | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | V | I | L | A | D | G | Q | I | T | P | F | S | L | L | M | A | N | A | G | T | G | E | P | L | L | T | L | V | C | S | G | S | W | P
Template Known Secondary structure |  |  |  |  |  | T | T | S | B | B |  |  |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  | S | S | B | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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