Phyre 2 Results for Q47319

Email | l.a.kelley@imperial.ac.uk
Description | Q47319
Date | Thu Jan 5 12:36:46 GMT 2012
Unique Job ID | 50aacaf3b68994f6

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1rk8C_ |
|  | 53.4 | 67 | PDB header:translation Chain: C: PDB Molecule:within the bgcn gene intron protein; PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex
2 | d1rk8c_ |
|  | 53.4 | 67 | Fold:WW domain-like Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
3 | d1xrxa1 |
|  | 40.6 | 23 | Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like
4 | c1xrxD_ |
|  | 40.6 | 23 | PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein
5 | c3mopC_ |
|  | 32.1 | 20 | PDB header:signaling protein, immune system Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88; PDBTitle: the ternary death domain complex of myd88, irak4, and irak2
6 | c3c6fD_ |
|  | 30.7 | 7 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis
7 | d2dofa1 |
|  | 22.5 | 22 | Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain
8 | c3bvoA_ |
|  | 22.3 | 29 | PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb
9 | d1ffya1 |
|  | 22.2 | 27 | Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
10 | d2dara2 |
|  | 20.0 | 31 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
11 | d1yuda1 |
|  | 18.2 | 13 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YML079-like
12 | c3lzzB_ |
|  | 15.5 | 6 | PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structures of cupin superfamily bbduf985 from branchiostoma2 belcheri tsingtauense in apo and gdp-bound forms
13 | d1esza_ |
|  | 15.2 | 13 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Periplasmic ferric siderophore binding protein FhuD
14 | d2apob1 |
|  | 14.8 | 28 | Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like
15 | c2kiqA_ |
|  | 14.8 | 14 | PDB header:transcription regulator Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150
16 | c2knqA_ |
|  | 13.4 | 20 | PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein h; PDBTitle: solution structure of e.coli gsph
17 | d1ctla1 |
|  | 13.3 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
18 | d2vkva2 |
|  | 13.3 | 12 | Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain
19 | d1imla1 |
|  | 13.1 | 17 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
20 | d1ibia1 |
|  | 12.1 | 38 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
21 | c2elpA_ |
| not modelled | 11.8 | 20 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
22 | c2a7yA_ |
| not modelled | 11.6 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359; PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis
23 | d2a7ya1 |
| not modelled | 11.6 | 25 | Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Rv2302-like
24 | d2etva1 |
| not modelled | 11.2 | 6 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like
25 | d2ey4e1 |
| not modelled | 10.4 | 31 | Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like
26 | c2yetB_ |
| not modelled | 10.2 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:gh61 isozyme a; PDBTitle: thermoascus gh61 isozyme a
27 | c2nrrA_ |
| not modelled | 10.0 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc
28 | c2kfdA_ |
| not modelled | 10.0 | 32 | PDB header:nuclear protein Chain: A: PDB Molecule:pre-mrna-processing protein prp40; PDBTitle: prp40 ff4 domain
29 | d1v95a_ |
| not modelled | 9.7 | 8 | Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS
30 | d2afaa1 |
| not modelled | 9.5 | 7 | Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase
31 | d1zbdb_ |
| not modelled | 9.1 | 19 | Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
32 | c2iy3A_ |
| not modelled | 9.0 | 11 | PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
33 | c2rr7A_ |
| not modelled | 8.9 | 36 | PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain 9; PDBTitle: microtubule binding domain of dynein-c
34 | d2ewoa1 |
| not modelled | 8.8 | 12 | Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase
35 | c3n43B_ |
| not modelled | 8.6 | 58 | PDB header:viral protein Chain: B: PDB Molecule:e2 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus.
36 | c2hw4A_ |
| not modelled | 8.5 | 21 | PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase
37 | d2cu8a1 |
| not modelled | 8.4 | 20 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
38 | c2xfbI_ |
| not modelled | 8.4 | 58 | PDB header:virus Chain: I: PDB Molecule:e2 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map
39 | c3mhsE_ |
| not modelled | 8.4 | 40 | PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde
40 | d1lf6a2 |
| not modelled | 8.3 | 23 | Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like
41 | c2k85A_ |
| not modelled | 8.2 | 16 | PDB header:protein binding Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: p190-a rhogap ff1 domain
42 | c2iv0A_ |
| not modelled | 8.2 | 9 | PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers
43 | c2hfvA_ |
| not modelled | 8.0 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90.
44 | c1qu2A_ |
| not modelled | 7.8 | 27 | PDB header:ligase/rna Chain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin
45 | d1xo1a2 |
| not modelled | 7.6 | 27 | Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain
46 | d1ulva4 |
| not modelled | 7.6 | 25 | Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like
47 | c3errB_ |
| not modelled | 7.4 | 10 | PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase
48 | d1kl7a_ |
| not modelled | 7.4 | 12 | Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
49 | c3muwU_ |
| not modelled | 7.1 | 42 | PDB header:virus Chain: U: PDB Molecule:structural polyprotein; PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus
50 | d2doea1 |
| not modelled | 6.9 | 10 | Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain
51 | c2ofqA_ |
| not modelled | 6.9 | 14 | PDB header:protein transport/protein transport Chain: A: PDB Molecule:trao; PDBTitle: nmr solution structure of a complex between the virb9/virb72 interaction domains of the pkm101 type iv secretion system
52 | d1ryqa_ |
| not modelled | 6.9 | 15 | Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like
53 | c3k7bA_ |
| not modelled | 6.7 | 40 | PDB header:viral protein Chain: A: PDB Molecule:protein a33; PDBTitle: the structure of the poxvirus a33 protein reveals a dimer of unique c-2 type lectin-like domains.
54 | c3kepA_ |
| not modelled | 6.7 | 15 | PDB header:protein transport, rna binding protein Chain: A: PDB Molecule:nucleoporin nup145; PDBTitle: crystal structure of the autoproteolytic domain from the2 nuclear pore complex component nup145 from saccharomyces3 cerevisiae
55 | d1pn0a2 |
| not modelled | 6.6 | 8 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like
56 | c3chxG_ |
| not modelled | 6.5 | 67 | PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo)
57 | c3n40P_ |
| not modelled | 6.5 | 58 | PDB header:viral protein Chain: P: PDB Molecule:p62 envelope glycoprotein; PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus.
58 | c2jyvA_ |
| not modelled | 6.2 | 57 | PDB header:cytokine Chain: A: PDB Molecule:granulin-2; PDBTitle: human granulin f
59 | d1omza_ |
| not modelled | 6.1 | 11 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin
60 | d2hfva1 |
| not modelled | 6.0 | 16 | Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like
61 | d1bpoa1 |
| not modelled | 6.0 | 20 | Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin heavy-chain linker domain
62 | c1yewC_ |
| not modelled | 5.9 | 57 | PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase
63 | c3g9yA_ |
| not modelled | 5.9 | 29 | PDB header:transcription/rna Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2; PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa
64 | d2gnra1 |
| not modelled | 5.8 | 29 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like
65 | c2xzn5_ |
| not modelled | 5.7 | 36 | PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein s26e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
66 | d2cqna1 |
| not modelled | 5.7 | 29 | Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain
67 | c2nvuB_ |
| not modelled | 5.6 | 29 | PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex
68 | d1j3kc_ |
| not modelled | 5.5 | 7 | Fold:Thymidylate synthase/dCMP hydroxymethylase Superfamily:Thymidylate synthase/dCMP hydroxymethylase Family:Thymidylate synthase/dCMP hydroxymethylase
69 | d3blza1 |
| not modelled | 5.3 | 20 | Fold:Cystatin-like Superfamily:NTF2-like Family:Sbal0622-like
70 | c3eabD_ |
| not modelled | 5.3 | 23 | PDB header:cell cycle Chain: D: PDB Molecule:spastin; PDBTitle: crystal structure of spastin mit in complex with escrt iii
71 | c1ko6A_ |
| not modelled | 5.3 | 18 | PDB header:transferase Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of c-terminal autoproteolytic domain of2 nucleoporin nup98
72 | d1aa7a_ |
| not modelled | 5.1 | 26 | Fold:Influenza virus matrix protein M1 Superfamily:Influenza virus matrix protein M1 Family:Influenza virus matrix protein M1
73 | d1vkpa_ |
| not modelled | 5.1 | 17 | Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase