Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP60595
DateThu Jan 5 12:06:56 GMT 2012
Unique Job ID4e25e237207fdcc8

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1jvnB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
Confidence and coverage
Confidence:100.0% Coverage: 97%
191 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVRER
Secondary structure 

















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Disorder  ?


























































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   .........70.........80.........90.........100.........110.........120
Sequence  ELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR
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Disorder 

























?

?
?













?????








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   .........130.........140.........150.........160.........170.........180
Sequence  VYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYGEPFTAAVQKDNFYGVQFHPE
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   .........190......
Sequence  RSGAAGAKLLKNFLEM
Secondary structure 




SS confidence 















Disorder 













??
Disorder confidence 















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1jvn chain B

3D model

Region: 2 - 195
Aligned: 191
Modelled: 194
Confidence: 100.0%
Identity: 37%
PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites

Phyre2

PDB 1ka9 chain H

3D model

Region: 1 - 195
Aligned: 189
Modelled: 195
Confidence: 100.0%
Identity: 34%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1k9v chain F

3D model

Region: 1 - 195
Aligned: 186
Modelled: 195
Confidence: 100.0%
Identity: 33%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1jvn chain A domain 2

3D model

Region: 1 - 195
Aligned: 192
Modelled: 195
Confidence: 100.0%
Identity: 34%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 2a9v chain A domain 1

3D model

Region: 1 - 196
Aligned: 178
Modelled: 179
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 3r74 chain B

3D model

Region: 2 - 195
Aligned: 177
Modelled: 177
Confidence: 100.0%
Identity: 18%
PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383

Phyre2

PDB 1wl8 chain A domain 1

3D model

Region: 1 - 196
Aligned: 174
Modelled: 178
Confidence: 100.0%
Identity: 21%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1gpm chain D

3D model

Region: 2 - 196
Aligned: 183
Modelled: 195
Confidence: 100.0%
Identity: 19%
PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate

Phyre2

PDB 2vxo chain B

3D model

Region: 2 - 196
Aligned: 171
Modelled: 175
Confidence: 100.0%
Identity: 23%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp

Phyre2

PDB 2ywc chain C

3D model

Region: 3 - 196
Aligned: 172
Modelled: 176
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp

Phyre2

PDB 1qdl chain B

3D model

Region: 1 - 196
Aligned: 181
Modelled: 182
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1gpm chain A domain 2

3D model

Region: 1 - 195
Aligned: 183
Modelled: 195
Confidence: 100.0%
Identity: 19%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 3uow chain B

3D model

Region: 2 - 194
Aligned: 173
Modelled: 183
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum

Phyre2

PDB 2ywj chain A

3D model

Region: 1 - 195
Aligned: 181
Modelled: 195
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii

Phyre2

PDB 3tqi chain B

3D model

Region: 1 - 196
Aligned: 170
Modelled: 170
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii

Phyre2

PDB 1i7q chain B

3D model

Region: 2 - 196
Aligned: 174
Modelled: 175
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 2iss chain F

3D model

Region: 1 - 196
Aligned: 177
Modelled: 192
Confidence: 100.0%
Identity: 23%
PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima

Phyre2

PDB 1i1q chain B

3D model

Region: 2 - 196
Aligned: 170
Modelled: 175
Confidence: 100.0%
Identity: 25%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1kee chain H

3D model

Region: 2 - 196
Aligned: 165
Modelled: 178
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin

Phyre2

PDB 2vpi chain A

3D model

Region: 2 - 195
Aligned: 164
Modelled: 165
Confidence: 100.0%
Identity: 23%
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain

Phyre2
1

c1jvnB_
2

d1ka9h_
3

d1k9vf_
4

d1jvna2
5

d2a9va1
6

c3r74B_
7

d1wl8a1
8

c1gpmD_
9

c2vxoB_
10

c2ywcC_
11

d1qdlb_
12

d1gpma2
13

c3uowB_
14

c2ywjA_
15

c3tqiB_
16

d1i7qb_
17

c2issF_
18

d1i1qb_
19

c1keeH_
20

c2vpiA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1jvnB_



100.0 37 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
2d1ka9h_



100.0 34 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
3d1k9vf_



100.0 33 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
4d1jvna2



100.0 34 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
5d2a9va1



100.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
6c3r74B_



100.0 18 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
7d1wl8a1



100.0 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
8c1gpmD_



100.0 19 PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
9c2vxoB_



100.0 23 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
10c2ywcC_



100.0 25 PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
11d1qdlb_



100.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
12d1gpma2



100.0 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
13c3uowB_



100.0 21 PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
14c2ywjA_



100.0 24 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
15c3tqiB_



100.0 21 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii
16d1i7qb_



100.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
17c2issF_



100.0 23 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
18d1i1qb_



100.0 25 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
19c1keeH_



100.0 25 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
20c2vpiA_



100.0 23 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
21d1q7ra_



not modelled 100.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
22d2nv0a1



not modelled 100.0 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
23d1a9xb2



not modelled 100.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
24c2ywdA_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
25c3d54D_



not modelled 100.0 15 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
26d2abwa1



not modelled 100.0 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
27c3fijD_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:lin1909 protein;
PDBTitle: crystal structure of a uncharacterized protein lin1909
28d1vcoa1



not modelled 100.0 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
29c1l9xA_



not modelled 100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
30d1l9xa_



not modelled 100.0 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
31d1s1ma1



not modelled 100.0 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
32c1vcnA_



not modelled 100.0 21 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
33c3nvaB_



not modelled 99.9 19 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
34d1t3ta2



not modelled 99.9 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
35c3l7nA_



not modelled 99.9 18 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
36c2ad5B_



not modelled 99.9 16 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
37d1o1ya_



not modelled 99.9 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
38c2w7tA_



not modelled 99.9 20 PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
39c3l83A_



not modelled 99.9 24 PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
40c2v4uA_



not modelled 99.9 17 PDB header:ligase
Chain: A: PDB Molecule:ctp synthase 2;
PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
41d2ghra1



not modelled 99.8 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
42c2h2wA_



not modelled 99.7 13 PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
43c1t3tA_



not modelled 99.1 14 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
44c1sy7B_



not modelled 98.5 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.
45c3uk7B_



not modelled 98.5 15 PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
46c3l4eA_



not modelled 98.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
47c3l3bA_



not modelled 98.2 27 PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
48c3fseB_



not modelled 98.1 14 PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
49d1sy7a1



not modelled 98.1 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
50d1p80a1



not modelled 98.1 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
51c3cneD_



not modelled 98.0 20 PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
52d1oi4a1



not modelled 97.9 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
53c3kklA_



not modelled 97.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
54d1p5fa_



not modelled 97.8 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
55d1g2ia_



not modelled 97.8 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
56d1fyea_



not modelled 97.7 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
57c3nooB_



not modelled 97.7 15 PDB header:lyase
Chain: B: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens
58d1vhqa_



not modelled 97.5 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
59c3ot1B_



not modelled 97.4 21 PDB header:structural genomics
Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate
PDBTitle: crystal structure of vc2308 protein
60c3n7tA_



not modelled 97.3 14 PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
61c1p81A_



not modelled 97.2 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli
62d1qvwa_



not modelled 97.2 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
63c3f5dA_



not modelled 97.2 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
64d2ab0a1



not modelled 97.0 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
65c2vrnA_



not modelled 96.9 22 PDB header:hydrolase
Chain: A: PDB Molecule:protease i;
PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily
66d1u9ca_



not modelled 96.9 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
67c3mgkA_



not modelled 96.9 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:intracellular protease/amidase related enzyme
PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824
68c3bhnA_



not modelled 96.7 16 PDB header:unknown function
Chain: A: PDB Molecule:thij/pfpi domain protein;
PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution
69d2fexa1



not modelled 96.7 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
70d1n57a_



not modelled 96.5 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
71d1xi8a3



not modelled 96.3 23 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
72c3er6D_



not modelled 96.3 15 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative transcriptional regulator protein;
PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus
73c3efeC_



not modelled 96.2 13 PDB header:chaperone
Chain: C: PDB Molecule:thij/pfpi family protein;
PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis
74d1z0sa1



not modelled 96.2 18 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
75c3ewnA_



not modelled 96.2 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae
76c1z0zC_



not modelled 96.1 19 PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
77d1p3da1



not modelled 95.6 17 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
78c3en0A_



not modelled 95.4 22 PDB header:hydrolase
Chain: A: PDB Molecule:cyanophycinase;
PDBTitle: the structure of cyanophycinase
79c2hqoA_



not modelled 94.9 12 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
80d2jfga1



not modelled 94.6 27 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
81d1j6ua1



not modelled 94.5 16 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
82c2hqrA_



not modelled 94.5 13 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
83c3ej6D_



not modelled 94.3 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:catalase-3;
PDBTitle: neurospora crassa catalase-3 crystal structure
84d1ydga_



not modelled 94.1 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
85d1kgsa2



not modelled 93.5 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
86c2ayxA_



not modelled 93.2 25 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
87c3graA_



not modelled 92.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, arac family;
PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida
88c2f00A_



not modelled 92.5 21 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
89d1mkza_



not modelled 92.4 17 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
90c1okjB_



not modelled 92.3 18 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protease yeaz;
PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma"
91d2nqra3



not modelled 92.3 26 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
92d1ny5a1



not modelled 92.1 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
93c3r0jA_



not modelled 92.1 14 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
94c2pjkA_



not modelled 91.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
95c3hdgE_



not modelled 91.9 14 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
96c3ic5A_



not modelled 91.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
97d1uz5a3



not modelled 91.6 28 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
98d1a9xa3



not modelled 91.6 23 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
99c1kgsA_



not modelled 91.5 14 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
100c3c97A_



not modelled 91.5 11 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:signal transduction histidine kinase;
PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
101d1ks9a2



not modelled 91.2 30 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
102c3sozC_



not modelled 90.9 13 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:cytoplasmic protein stm1381;
PDBTitle: cytoplasmic protein stm1381 from salmonella typhimurium lt2
103d1y5ea1



not modelled 90.8 13 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
104c2rdmB_



not modelled 90.8 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
105d2ftsa3



not modelled 90.2 28 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
106c1ny5A_



not modelled 89.8 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
107d2b4aa1



not modelled 89.7 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
108c2nqqA_



not modelled 89.4 25 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
109c2zkiH_



not modelled 89.4 26 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
110c2fu3A_



not modelled 89.3 25 PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain
111c3c3mA_



not modelled 89.3 15 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
112c3kbqA_



not modelled 89.2 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
113c2is8A_



not modelled 89.1 19 PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
114d2gk3a1



not modelled 89.1 10 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
115c1ks9A_



not modelled 89.0 37 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: ketopantoate reductase from escherichia coli
116d1mb3a_



not modelled 89.0 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
117c3t6kB_



not modelled 89.0 19 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
118d1peya_



not modelled 88.9 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
119d1zgza1



not modelled 88.9 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
120d1w25a1



not modelled 88.7 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0