Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP45527
DateThu Jan 5 12:02:54 GMT 2012
Unique Job ID4b46f79dcb0285f2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2bdqA_
Top template information
PDB header:metal transport
Chain: A: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.
Confidence and coverage
Confidence: 98.6% Coverage: 48%
159 residues ( 48% of your sequence) have been modelled with 98.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
216 residues ( 65%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK
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Disorder  ?


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???
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   .........70.........80.........90.........100.........110.........120
Sequence  LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASA
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   .........130.........140.........150.........160.........170.........180
Sequence  TNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSS
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   .........190.........200.........210.........220.........230.........240
Sequence  YLTGESPNTIGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG
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Disorder 


?
??
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?????????
















???





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   .........250.........260.........270.........280.........290.........300
Sequence  ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQ
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?
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   .........310.........320.........330.
Sequence  NFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
Secondary structure 




















SS confidence 






























Disorder  ?????


















???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2bdq chain A

3D model

Region: 1 - 166
Aligned: 159
Modelled: 166
Confidence: 98.6%
Identity: 17%
PDB header:metal transport
Chain: A: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.

Phyre2

PDB 3iwp chain K

3D model

Region: 1 - 166
Aligned: 158
Modelled: 164
Confidence: 98.5%
Identity: 15%
PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc

Phyre2

PDB 1twd chain A

3D model

Region: 3 - 166
Aligned: 155
Modelled: 158
Confidence: 98.1%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: CutC-like
Family: CutC-like

Phyre2

PDB 1xi3 chain A

3D model

Region: 10 - 296
Aligned: 174
Modelled: 188
Confidence: 97.9%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: Thiamin phosphate synthase
Family: Thiamin phosphate synthase

Phyre2

PDB 1vli chain A domain 2

3D model

Region: 3 - 157
Aligned: 142
Modelled: 148
Confidence: 97.9%
Identity: 21%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: NeuB-like

Phyre2

PDB 1vli chain A

3D model

Region: 10 - 175
Aligned: 144
Modelled: 158
Confidence: 97.9%
Identity: 20%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution

Phyre2

PDB 3qja chain A

3D model

Region: 9 - 140
Aligned: 108
Modelled: 132
Confidence: 97.8%
Identity: 15%
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form

Phyre2

PDB 1a53 chain A

3D model

Region: 9 - 140
Aligned: 108
Modelled: 122
Confidence: 97.7%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: Ribulose-phoshate binding barrel
Family: Tryptophan biosynthesis enzymes

Phyre2

PDB 2zdr chain A domain 2

3D model

Region: 10 - 160
Aligned: 138
Modelled: 144
Confidence: 97.7%
Identity: 14%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: NeuB-like

Phyre2

PDB 2c3z chain A

3D model

Region: 9 - 140
Aligned: 108
Modelled: 132
Confidence: 97.7%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus

Phyre2

PDB 3kts chain A

3D model

Region: 3 - 160
Aligned: 139
Modelled: 145
Confidence: 97.7%
Identity: 12%
PDB header:transcriptional regulator
Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein;
PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365

Phyre2

PDB 2ze3 chain A

3D model

Region: 3 - 169
Aligned: 165
Modelled: 167
Confidence: 97.6%
Identity: 21%
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus

Phyre2

PDB 3ble chain A

3D model

Region: 1 - 141
Aligned: 140
Modelled: 141
Confidence: 97.6%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans;
PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate

Phyre2

PDB 1xuz chain A

3D model

Region: 10 - 160
Aligned: 138
Modelled: 144
Confidence: 97.5%
Identity: 14%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol

Phyre2

PDB 3ivu chain B

3D model

Region: 9 - 141
Aligned: 131
Modelled: 133
Confidence: 97.2%
Identity: 9%
PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og

Phyre2

PDB 3ih1 chain A

3D model

Region: 3 - 160
Aligned: 155
Modelled: 158
Confidence: 97.2%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis

Phyre2

PDB 3igs chain B

3D model

Region: 8 - 140
Aligned: 108
Modelled: 123
Confidence: 97.1%
Identity: 11%
PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase

Phyre2

PDB 2ftp chain A

3D model

Region: 1 - 162
Aligned: 161
Modelled: 162
Confidence: 97.1%
Identity: 16%
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa

Phyre2

PDB 1vzw chain A domain 1

3D model

Region: 7 - 152
Aligned: 129
Modelled: 133
Confidence: 97.0%
Identity: 13%
Fold: TIM beta/alpha-barrel
Superfamily: Ribulose-phoshate binding barrel
Family: Histidine biosynthesis enzymes

Phyre2

PDB 1yad chain D

3D model

Region: 6 - 295
Aligned: 173
Modelled: 191
Confidence: 97.0%
Identity: 22%
PDB header:transcription
Chain: D: PDB Molecule:regulatory protein teni;
PDBTitle: structure of teni from bacillus subtilis

Phyre2
1

c2bdqA_
2

c3iwpK_
3

d1twda_
4

d1xi3a_
5

d1vlia2
6

c1vliA_
7

c3qjaA_
8

d1a53a_
9

d2zdra2
10

c2c3zA_
11

c3ktsA_
12

c2ze3A_
13

c3bleA_
14

c1xuzA_
15

c3ivuB_
16

c3ih1A_
17

c3igsB_
18

c2ftpA_
19

d1vzwa1
20

c1yadD_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2bdqA_



98.6 17 PDB header:metal transport
Chain: A: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.
2c3iwpK_



98.5 15 PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc
3d1twda_



98.1 17 Fold:TIM beta/alpha-barrel
Superfamily:CutC-like
Family:CutC-like
4d1xi3a_



97.9 17 Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
5d1vlia2



97.9 21 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
6c1vliA_



97.9 20 PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
7c3qjaA_



97.8 15 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
8d1a53a_



97.7 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
9d2zdra2



97.7 14 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
10c2c3zA_



97.7 18 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
11c3ktsA_



97.7 12 PDB header:transcriptional regulator
Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein;
PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
12c2ze3A_



97.6 21 PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
13c3bleA_



97.6 11 PDB header:transferase
Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans;
PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate
14c1xuzA_



97.5 14 PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
15c3ivuB_



97.2 9 PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og
16c3ih1A_



97.2 17 PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
17c3igsB_



97.1 11 PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
18c2ftpA_



97.1 16 PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
19d1vzwa1



97.0 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
20c1yadD_



97.0 22 PDB header:transcription
Chain: D: PDB Molecule:regulatory protein teni;
PDBTitle: structure of teni from bacillus subtilis
21d1jvna1



not modelled 97.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
22c2cw6B_



not modelled 97.0 14 PDB header:lyase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial;
PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria
23d1j5ta_



not modelled 97.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
24d1qo2a_



not modelled 96.9 12 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
25c3fa4D_



not modelled 96.9 15 PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
26c3ez4B_



not modelled 96.9 13 PDB header:transferase
Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase;
PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei
27d1h5ya_



not modelled 96.9 24 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
28d1vc4a_



not modelled 96.9 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
29d1wa3a1



not modelled 96.8 19 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
30c3navB_



not modelled 96.8 15 PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
31c1jvnB_



not modelled 96.8 18 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
32c3pg8B_



not modelled 96.8 15 PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
33d1thfd_



not modelled 96.7 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
34c3oa3A_



not modelled 96.7 11 PDB header:lyase
Chain: A: PDB Molecule:aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis
35d1ub3a_



not modelled 96.7 19 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
36c1zlpA_



not modelled 96.7 15 PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
37d1muma_



not modelled 96.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
38c3bolB_



not modelled 96.7 16 PDB header:transferase
Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine
PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
39c3b8iF_



not modelled 96.7 19 PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
40d1o0ya_



not modelled 96.6 12 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
41c3lyeA_



not modelled 96.6 11 PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
42c1ydnA_



not modelled 96.6 12 PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
43d2tpsa_



not modelled 96.6 17 Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
44d1qopa_



not modelled 96.6 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
45d1geqa_



not modelled 96.6 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
46d1piia2



not modelled 96.5 14 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
47c3eooL_



not modelled 96.5 18 PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
48c3ngjC_



not modelled 96.4 12 PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
49d1i4na_



not modelled 96.4 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
50c3g8rA_



not modelled 96.3 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
51c3ng3A_



not modelled 96.3 15 PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde
52d1n7ka_



not modelled 96.3 12 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
53c2ekcA_



not modelled 96.3 17 PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
54c3gndC_



not modelled 96.3 13 PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
55d1mzha_



not modelled 96.3 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
56d1yxya1



not modelled 96.2 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
57d1ojxa_



not modelled 96.2 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
58c3sz8D_



not modelled 96.2 14 PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
59d1ujpa_



not modelled 96.2 22 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
60d1qpoa1



not modelled 96.1 22 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
61c2nuxB_



not modelled 96.1 15 PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate
PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
62c2y85D_



not modelled 96.0 17 PDB header:isomerase
Chain: D: PDB Molecule:phosphoribosyl isomerase a;
PDBTitle: crystal structure of mycobacterium tuberculosis phosphoribosyl2 isomerase with bound rcdrp
63d1o4ua1



not modelled 96.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
64c3bg3B_



not modelled 96.0 14 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus)
65c3q94B_



not modelled 96.0 14 PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii;
PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor'
66c1o4uA_



not modelled 96.0 18 PDB header:transferase
Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase;
PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution
67d1xcfa_



not modelled 96.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
68d1h1ya_



not modelled 95.9 8 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
69d1e0ta2



not modelled 95.9 18 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
70c3o63B_



not modelled 95.9 19 PDB header:transferase
Chain: B: PDB Molecule:probable thiamine-phosphate pyrophosphorylase;
PDBTitle: crystal structure of thiamin phosphate synthase from mycobacterium2 tuberculosis
71c1qpoA_



not modelled 95.8 22 PDB header:transferase
Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase;
PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis
72c2w6rA_



not modelled 95.8 15 PDB header:lyase
Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit
PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels
73d1u5ha_



not modelled 95.8 22 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
74d1ujqa_



not modelled 95.8 17 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
75c2r94B_



not modelled 95.8 16 PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase;
PDBTitle: crystal structure of kd(p)ga from t.tenax
76c2jbmA_



not modelled 95.8 20 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: qprtase structure from human
77d1y0ea_



not modelled 95.8 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
78d1ka9f_



not modelled 95.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
79d1tqxa_



not modelled 95.7 8 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
80c3labA_



not modelled 95.7 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate)
PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica
81d1w3ia_



not modelled 95.7 12 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
82d1oy0a_



not modelled 95.7 13 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
83c1u5vA_



not modelled 95.6 26 PDB header:lyase
Chain: A: PDB Molecule:cite;
PDBTitle: structure of cite complexed with triphosphate group of atp2 form mycobacterium tuberculosis
84d1mxsa_



not modelled 95.5 17 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
85c2b7pA_



not modelled 95.5 21 PDB header:transferase
Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori
86c2qiwA_



not modelled 95.5 15 PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
87c1r30A_



not modelled 95.5 12 PDB header:transferase
Chain: A: PDB Molecule:biotin synthase;
PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme
88d1r30a_



not modelled 95.5 12 Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Biotin synthase
89c3gr7A_



not modelled 95.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form
90c1piiA_



not modelled 95.5 21 PDB header:bifunctional(isomerase and synthase)
Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase;
PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase:3 indoleglycerolphosphate synthase from escherichia coli4 refined at 2.0 angstroms resolution
91c3pajA_



not modelled 95.4 26 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating;
PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961
92c3tqvA_



not modelled 95.3 25 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: structure of the nicotinate-nucleotide pyrophosphorylase from2 francisella tularensis.
93d1wbha1



not modelled 95.3 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
94c3q58A_



not modelled 95.3 14 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
95c1e0tD_



not modelled 95.2 17 PDB header:phosphotransferase
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: r292d mutant of e. coli pyruvate kinase
96c3thaB_



not modelled 95.2 15 PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni.
97d1s2wa_



not modelled 95.2 13 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
98c1ydoC_



not modelled 95.2 14 PDB header:lyase
Chain: C: PDB Molecule:hmg-coa lyase;
PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
99c2hjpA_



not modelled 95.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:phosphonopyruvate hydrolase;
PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++
100d1dvja_



not modelled 95.1 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
101c2iswB_



not modelled 95.1 26 PDB header:lyase
Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase;
PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate
102d1qapa1



not modelled 95.1 26 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
103c3l0gD_



not modelled 95.1 18 PDB header:transferase
Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution
104c2qjhH_



not modelled 95.1 19 PDB header:lyase
Chain: H: PDB Molecule:putative aldolase mj0400;
PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate
105d1o60a_



not modelled 95.0 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
106d1vhca_



not modelled 95.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
107c2hmcA_



not modelled 95.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
108d1m3ua_



not modelled 94.9 11 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
109c1rr2A_



not modelled 94.9 16 PDB header:transferase
Chain: A: PDB Molecule:transcarboxylase 5s subunit;
PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
110c2dh3A_



not modelled 94.9 15 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
111c2v5jB_



not modelled 94.9 11 PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
112d1x7fa2



not modelled 94.9 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Outer surface protein, N-terminal domain
113c3cixA_



not modelled 94.8 7 PDB header:adomet binding protein
Chain: A: PDB Molecule:fefe-hydrogenase maturase;
PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate
114d1vkfa_



not modelled 94.8 12 Fold:TIM beta/alpha-barrel
Superfamily:GlpP-like
Family:GlpP-like
115c3ct7E_



not modelled 94.8 13 PDB header:isomerase
Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase;
PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12
116d1nvma2



not modelled 94.7 14 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
117d1dxea_



not modelled 94.6 10 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
118c1qapA_



not modelled 94.6 28 PDB header:glycosyltransferase
Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase;
PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid
119c1zfjA_



not modelled 94.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
120c1wzaA_



not modelled 94.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0