Phyre 2 Results for P45527

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Email | l.a.kelley@imperial.ac.uk
Description | P45527
Date | Thu Jan 5 12:02:54 GMT 2012
Unique Job ID | 4b46f79dcb0285f2

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2bdqA_
Top template information
PDB header:metal transport Chain: A: PDB Molecule:copper homeostasis protein cutc; PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.
Confidence and coverage
Confidence: | 98.6% | Coverage: | 48%
159 residues ( 48% of your sequence) have been modelled with 98.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
216 residues ( 65%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | E | L | L | C | P | A | G | N | L | P | A | L | K | A | A | I | E | N | G | A | D | A | V | Y | I | G | L | K | D | D | T | N | A | R | H | F | A | G | L | N | F | T | E | K | K | L | Q | E | A | V | S | F | V | H | Q | H | R | R | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | H | I | A | I | N | T | F | A | H | P | D | G | Y | A | R | W | Q | R | A | V | D | M | A | A | Q | L | G | A | D | A | L | I | L | A | D | L | A | M | L | E | Y | A | A | E | R | Y | P | H | I | E | R | H | V | S | V | Q | A | S | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | T | N | E | E | A | I | N | F | Y | H | R | H | F | D | V | A | R | V | V | L | P | R | V | L | S | I | H | Q | V | K | Q | L | A | R | V | T | P | V | P | L | E | V | F | A | F | G | S | L | C | I | M | S | E | G | R | C | Y | L | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | Y | L | T | G | E | S | P | N | T | I | G | A | C | S | P | A | R | F | V | R | W | Q | Q | T | P | Q | G | L | E | S | R | L | N | E | V | L | I | D | R | Y | Q | D | G | E | N | A | G | Y | P | T | L | C | K | G | R | Y | L | V | D | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | E | R | Y | H | A | L | E | E | P | T | S | L | N | T | L | E | L | L | P | E | L | M | A | A | N | I | A | S | V | K | I | E | G | R | Q | R | S | P | A | Y | V | S | Q | V | A | K | V | W | R | Q | A | I | D | R | C | K | A | D | P | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | .
Sequence |  | N | F | V | P | Q | S | A | W | M | E | T | L | G | S | M | S | E | G | T | Q | T | T | L | G | A | Y | H | R | K | W | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2bdqA_ |

### PDB 2bdq chain A

Region: 1 - 166
Aligned: 159
Modelled: 166
Confidence: 98.6%
Identity: 17%
PDB header:metal transport
Chain: A: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.

Phyre2
2 |
| c3iwpK_ |

### PDB 3iwp chain K

Region: 1 - 166
Aligned: 158
Modelled: 164
Confidence: 98.5%
Identity: 15%
PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc

Phyre2
3 |
| d1twda_ |

### PDB 1twd chain A

Region: 3 - 166
Aligned: 155
Modelled: 158
Confidence: 98.1%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: CutC-like
Family: CutC-like

Phyre2
4 |
| d1xi3a_ |

### PDB 1xi3 chain A

Region: 10 - 296
Aligned: 174
Modelled: 188
Confidence: 97.9%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: Thiamin phosphate synthase
Family: Thiamin phosphate synthase

Phyre2
5 |
| d1vlia2 |

### PDB 1vli chain A domain 2

Region: 3 - 157
Aligned: 142
Modelled: 148
Confidence: 97.9%
Identity: 21%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: NeuB-like

Phyre2
6 |
| c1vliA_ |

### PDB 1vli chain A

Region: 10 - 175
Aligned: 144
Modelled: 158
Confidence: 97.9%
Identity: 20%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution

Phyre2
7 |
| c3qjaA_ |

### PDB 3qja chain A

Region: 9 - 140
Aligned: 108
Modelled: 132
Confidence: 97.8%
Identity: 15%
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form

Phyre2
8 |
| d1a53a_ |

### PDB 1a53 chain A

Region: 9 - 140
Aligned: 108
Modelled: 122
Confidence: 97.7%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: Ribulose-phoshate binding barrel
Family: Tryptophan biosynthesis enzymes

Phyre2
9 |
| d2zdra2 |

### PDB 2zdr chain A domain 2

Region: 10 - 160
Aligned: 138
Modelled: 144
Confidence: 97.7%
Identity: 14%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: NeuB-like

Phyre2
10 |
| c2c3zA_ |

### PDB 2c3z chain A

Region: 9 - 140
Aligned: 108
Modelled: 132
Confidence: 97.7%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus

Phyre2
11 |
| c3ktsA_ |

### PDB 3kts chain A

Region: 3 - 160
Aligned: 139
Modelled: 145
Confidence: 97.7%
Identity: 12%
PDB header:transcriptional regulator
Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein;
PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365

Phyre2
12 |
| c2ze3A_ |

### PDB 2ze3 chain A

Region: 3 - 169
Aligned: 165
Modelled: 167
Confidence: 97.6%
Identity: 21%
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus

Phyre2
13 |
| c3bleA_ |

### PDB 3ble chain A

Region: 1 - 141
Aligned: 140
Modelled: 141
Confidence: 97.6%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans;
PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate

Phyre2
14 |
| c1xuzA_ |

### PDB 1xuz chain A

Region: 10 - 160
Aligned: 138
Modelled: 144
Confidence: 97.5%
Identity: 14%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol

Phyre2
15 |
| c3ivuB_ |

### PDB 3ivu chain B

Region: 9 - 141
Aligned: 131
Modelled: 133
Confidence: 97.2%
Identity: 9%
PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og

Phyre2
16 |
| c3ih1A_ |

### PDB 3ih1 chain A

Region: 3 - 160
Aligned: 155
Modelled: 158
Confidence: 97.2%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis

Phyre2
17 |
| c3igsB_ |

### PDB 3igs chain B

Region: 8 - 140
Aligned: 108
Modelled: 123
Confidence: 97.1%
Identity: 11%
PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase

Phyre2
18 |
| c2ftpA_ |

### PDB 2ftp chain A

Region: 1 - 162
Aligned: 161
Modelled: 162
Confidence: 97.1%
Identity: 16%
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa

Phyre2
19 |
| d1vzwa1 |

### PDB 1vzw chain A domain 1

Region: 7 - 152
Aligned: 129
Modelled: 133
Confidence: 97.0%
Identity: 13%
Fold: TIM beta/alpha-barrel
Superfamily: Ribulose-phoshate binding barrel
Family: Histidine biosynthesis enzymes

Phyre2
20 |
| c1yadD_ |

### PDB 1yad chain D

Region: 6 - 295
Aligned: 173
Modelled: 191
Confidence: 97.0%
Identity: 22%
PDB header:transcription
Chain: D: PDB Molecule:regulatory protein teni;
PDBTitle: structure of teni from bacillus subtilis

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2bdqA_ |
|  | 98.6 | 17 | PDB header:metal transport Chain: A: PDB Molecule:copper homeostasis protein cutc; PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.
2 | c3iwpK_ |
|  | 98.5 | 15 | PDB header:metal binding protein Chain: K: PDB Molecule:copper homeostasis protein cutc homolog; PDBTitle: crystal structure of human copper homeostasis protein cutc
3 | d1twda_ |
|  | 98.1 | 17 | Fold:TIM beta/alpha-barrel Superfamily:CutC-like Family:CutC-like
4 | d1xi3a_ |
|  | 97.9 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase
5 | d1vlia2 |
|  | 97.9 | 21 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like
6 | c1vliA_ |
|  | 97.9 | 20 | PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
7 | c3qjaA_ |
|  | 97.8 | 15 | PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
8 | d1a53a_ |
|  | 97.7 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
9 | d2zdra2 |
|  | 97.7 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like
10 | c2c3zA_ |
|  | 97.7 | 18 | PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
11 | c3ktsA_ |
|  | 97.7 | 12 | PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
12 | c2ze3A_ |
|  | 97.6 | 21 | PDB header:isomerase Chain: A: PDB Molecule:dfa0005; PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
13 | c3bleA_ |
|  | 97.6 | 11 | PDB header:transferase Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans; PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate
14 | c1xuzA_ |
|  | 97.5 | 14 | PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
15 | c3ivuB_ |
|  | 97.2 | 9 | PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og
16 | c3ih1A_ |
|  | 97.2 | 17 | PDB header:lyase Chain: A: PDB Molecule:methylisocitrate lyase; PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
17 | c3igsB_ |
|  | 97.1 | 11 | PDB header:isomerase Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2; PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
18 | c2ftpA_ |
|  | 97.1 | 16 | PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
19 | d1vzwa1 |
|  | 97.0 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
20 | c1yadD_ |
|  | 97.0 | 22 | PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis
21 | d1jvna1 |
| not modelled | 97.0 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
22 | c2cw6B_ |
| not modelled | 97.0 | 14 | PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria
23 | d1j5ta_ |
| not modelled | 97.0 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
24 | d1qo2a_ |
| not modelled | 96.9 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
25 | c3fa4D_ |
| not modelled | 96.9 | 15 | PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
26 | c3ez4B_ |
| not modelled | 96.9 | 13 | PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei
27 | d1h5ya_ |
| not modelled | 96.9 | 24 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
28 | d1vc4a_ |
| not modelled | 96.9 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
29 | d1wa3a1 |
| not modelled | 96.8 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
30 | c3navB_ |
| not modelled | 96.8 | 15 | PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
31 | c1jvnB_ |
| not modelled | 96.8 | 18 | PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
32 | c3pg8B_ |
| not modelled | 96.8 | 15 | PDB header:transferase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
33 | d1thfd_ |
| not modelled | 96.7 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
34 | c3oa3A_ |
| not modelled | 96.7 | 11 | PDB header:lyase Chain: A: PDB Molecule:aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis
35 | d1ub3a_ |
| not modelled | 96.7 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
36 | c1zlpA_ |
| not modelled | 96.7 | 15 | PDB header:lyase Chain: A: PDB Molecule:petal death protein; PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
37 | d1muma_ |
| not modelled | 96.7 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
38 | c3bolB_ |
| not modelled | 96.7 | 16 | PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
39 | c3b8iF_ |
| not modelled | 96.7 | 19 | PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
40 | d1o0ya_ |
| not modelled | 96.6 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
41 | c3lyeA_ |
| not modelled | 96.6 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase; PDBTitle: crystal structure of oxaloacetate acetylhydrolase
42 | c1ydnA_ |
| not modelled | 96.6 | 12 | PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
43 | d2tpsa_ |
| not modelled | 96.6 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase
44 | d1qopa_ |
| not modelled | 96.6 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
45 | d1geqa_ |
| not modelled | 96.6 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
46 | d1piia2 |
| not modelled | 96.5 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
47 | c3eooL_ |
| not modelled | 96.5 | 18 | PDB header:lyase Chain: L: PDB Molecule:methylisocitrate lyase; PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
48 | c3ngjC_ |
| not modelled | 96.4 | 12 | PDB header:lyase Chain: C: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
49 | d1i4na_ |
| not modelled | 96.4 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
50 | c3g8rA_ |
| not modelled | 96.3 | 17 | PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
51 | c3ng3A_ |
| not modelled | 96.3 | 15 | PDB header:lyase Chain: A: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde
52 | d1n7ka_ |
| not modelled | 96.3 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
53 | c2ekcA_ |
| not modelled | 96.3 | 17 | PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
54 | c3gndC_ |
| not modelled | 96.3 | 13 | PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
55 | d1mzha_ |
| not modelled | 96.3 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
56 | d1yxya1 |
| not modelled | 96.2 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like
57 | d1ojxa_ |
| not modelled | 96.2 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
58 | c3sz8D_ |
| not modelled | 96.2 | 14 | PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
59 | d1ujpa_ |
| not modelled | 96.2 | 22 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
60 | d1qpoa1 |
| not modelled | 96.1 | 22 | Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like
61 | c2nuxB_ |
| not modelled | 96.1 | 15 | PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
62 | c2y85D_ |
| not modelled | 96.0 | 17 | PDB header:isomerase Chain: D: PDB Molecule:phosphoribosyl isomerase a; PDBTitle: crystal structure of mycobacterium tuberculosis phosphoribosyl2 isomerase with bound rcdrp
63 | d1o4ua1 |
| not modelled | 96.0 | 18 | Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like
64 | c3bg3B_ |
| not modelled | 96.0 | 14 | PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial; PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus)
65 | c3q94B_ |
| not modelled | 96.0 | 14 | PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii; PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor'
66 | c1o4uA_ |
| not modelled | 96.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution
67 | d1xcfa_ |
| not modelled | 96.0 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
68 | d1h1ya_ |
| not modelled | 95.9 | 8 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase
69 | d1e0ta2 |
| not modelled | 95.9 | 18 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase
70 | c3o63B_ |
| not modelled | 95.9 | 19 | PDB header:transferase Chain: B: PDB Molecule:probable thiamine-phosphate pyrophosphorylase; PDBTitle: crystal structure of thiamin phosphate synthase from mycobacterium2 tuberculosis
71 | c1qpoA_ |
| not modelled | 95.8 | 22 | PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis
72 | c2w6rA_ |
| not modelled | 95.8 | 15 | PDB header:lyase Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels
73 | d1u5ha_ |
| not modelled | 95.8 | 22 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase
74 | d1ujqa_ |
| not modelled | 95.8 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
75 | c2r94B_ |
| not modelled | 95.8 | 16 | PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase; PDBTitle: crystal structure of kd(p)ga from t.tenax
76 | c2jbmA_ |
| not modelled | 95.8 | 20 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human
77 | d1y0ea_ |
| not modelled | 95.8 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like
78 | d1ka9f_ |
| not modelled | 95.8 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
79 | d1tqxa_ |
| not modelled | 95.7 | 8 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase
80 | c3labA_ |
| not modelled | 95.7 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate) PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica
81 | d1w3ia_ |
| not modelled | 95.7 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
82 | d1oy0a_ |
| not modelled | 95.7 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB
83 | c1u5vA_ |
| not modelled | 95.6 | 26 | PDB header:lyase Chain: A: PDB Molecule:cite; PDBTitle: structure of cite complexed with triphosphate group of atp2 form mycobacterium tuberculosis
84 | d1mxsa_ |
| not modelled | 95.5 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
85 | c2b7pA_ |
| not modelled | 95.5 | 21 | PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori
86 | c2qiwA_ |
| not modelled | 95.5 | 15 | PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
87 | c1r30A_ |
| not modelled | 95.5 | 12 | PDB header:transferase Chain: A: PDB Molecule:biotin synthase; PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme
88 | d1r30a_ |
| not modelled | 95.5 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Biotin synthase
89 | c3gr7A_ |
| not modelled | 95.5 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dehydrogenase; PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form
90 | c1piiA_ |
| not modelled | 95.5 | 21 | PDB header:bifunctional(isomerase and synthase) Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase; PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase:3 indoleglycerolphosphate synthase from escherichia coli4 refined at 2.0 angstroms resolution
91 | c3pajA_ |
| not modelled | 95.4 | 26 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961
92 | c3tqvA_ |
| not modelled | 95.3 | 25 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: structure of the nicotinate-nucleotide pyrophosphorylase from2 francisella tularensis.
93 | d1wbha1 |
| not modelled | 95.3 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
94 | c3q58A_ |
| not modelled | 95.3 | 14 | PDB header:isomerase Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase; PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
95 | c1e0tD_ |
| not modelled | 95.2 | 17 | PDB header:phosphotransferase Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: r292d mutant of e. coli pyruvate kinase
96 | c3thaB_ |
| not modelled | 95.2 | 15 | PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni.
97 | d1s2wa_ |
| not modelled | 95.2 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
98 | c1ydoC_ |
| not modelled | 95.2 | 14 | PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
99 | c2hjpA_ |
| not modelled | 95.2 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:phosphonopyruvate hydrolase; PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++
100 | d1dvja_ |
| not modelled | 95.1 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase
101 | c2iswB_ |
| not modelled | 95.1 | 26 | PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate
102 | d1qapa1 |
| not modelled | 95.1 | 26 | Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like
103 | c3l0gD_ |
| not modelled | 95.1 | 18 | PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution
104 | c2qjhH_ |
| not modelled | 95.1 | 19 | PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate
105 | d1o60a_ |
| not modelled | 95.0 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase
106 | d1vhca_ |
| not modelled | 95.0 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
107 | c2hmcA_ |
| not modelled | 95.0 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
108 | d1m3ua_ |
| not modelled | 94.9 | 11 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB
109 | c1rr2A_ |
| not modelled | 94.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:transcarboxylase 5s subunit; PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
110 | c2dh3A_ |
| not modelled | 94.9 | 15 | PDB header:transport protein, signaling protein Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain; PDBTitle: crystal structure of human ed-4f2hc
111 | c2v5jB_ |
| not modelled | 94.9 | 11 | PDB header:lyase Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PDBTitle: apo class ii aldolase hpch
112 | d1x7fa2 |
| not modelled | 94.9 | 13 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Outer surface protein, N-terminal domain
113 | c3cixA_ |
| not modelled | 94.8 | 7 | PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate
114 | d1vkfa_ |
| not modelled | 94.8 | 12 | Fold:TIM beta/alpha-barrel Superfamily:GlpP-like Family:GlpP-like
115 | c3ct7E_ |
| not modelled | 94.8 | 13 | PDB header:isomerase Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase; PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12
116 | d1nvma2 |
| not modelled | 94.7 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:HMGL-like
117 | d1dxea_ |
| not modelled | 94.6 | 10 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase
118 | c1qapA_ |
| not modelled | 94.6 | 28 | PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid
119 | c1zfjA_ |
| not modelled | 94.6 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
120 | c1wzaA_ |
| not modelled | 94.4 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase a; PDBTitle: crystal structure of alpha-amylase from h.orenii

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0