Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	D	K	T	S	L	S	Y	K	D	A	G	V	D	I	D	A	G	N	A	L	V	G	R	I	K	G	V	V	K	K	T	R	R	P	E	V	M	G	G	L	G	G	F	G	A	L	C	A	L	P	Q	K	Y	R	E	P	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	S	G	T	D	G	V	G	T	K	L	R	L	A	M	D	L	K	R	H	D	T	I	G	I	D	L	V	A	M	C	V	N	D	L	V	V	Q	G	A	E	P	L	F	F	L	D	Y	Y	A	T	G	K	L	D	V	D	T	A	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	V	I	S	G	I	A	E	G	C	L	Q	S	G	C	S	L	V	G	G	E	T	A	E	M	P	G	M	Y	H	G	E	D	Y	D	V	A	G	F	C	V	G	V	V	E	K	S	E	I	I	D	G	S	K	V	S	D	G	D	V
Secondary structure
SS confidence
Disorder																																																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	I	A	L	G	S	S	G	P	H	S	N	G	Y	S	L	V	R	K	I	L	E	V	S	G	C	D	P	Q	T	T	E	L	D	G	K	P	L	A	D	H	L	L	A	P	T	R	I	Y	V	K	S	V	L	E	L	I	E	K	V
Secondary structure
SS confidence
Disorder																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	V	H	A	I	A	H	L	T	G	G	G	F	W	E	N	I	P	R	V	L	P	D	N	T	Q	A	V	I	D	E	S	S	W	Q	W	P	E	V	F	N	W	L	Q	T	A	G	N	V	E	H	H	E	M	Y	R	T	F	N	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Sequence		G	V	G	M	I	I	A	L	P	A	P	E	V	D	K	A	L	A	L	L	N	A	N	G	E	N	A	W	K	I	G	I	I	K	A	S	D	S	E	Q	R	V	V	I	E
Secondary structure
SS confidence
Disorder																																							?	?	?					?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3m84 chain A Region: 4 - 342 Aligned: 339 Modelled: 338 Confidence: 100.0% Identity: 41% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis Phyre2 PDB 1cli chain D Region: 21 - 345 Aligned: 325 Modelled: 325 Confidence: 100.0% Identity: 100% PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution Phyre2 PDB 2z01 chain A Region: 21 - 338 Aligned: 306 Modelled: 318 Confidence: 100.0% Identity: 48% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus Phyre2 PDB 3mdo chain B Region: 45 - 343 Aligned: 294 Modelled: 297 Confidence: 100.0% Identity: 25% PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution Phyre2 PDB 2btu chain B Region: 16 - 338 Aligned: 306 Modelled: 323 Confidence: 100.0% Identity: 55% PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. Phyre2 PDB 3kiz chain A Region: 50 - 345 Aligned: 291 Modelled: 296 Confidence: 100.0% Identity: 25% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution Phyre2 PDB 2v9y chain A Region: 47 - 345 Aligned: 296 Modelled: 296 Confidence: 100.0% Identity: 49% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase Phyre2 PDB 3fd5 chain B Region: 24 - 343 Aligned: 304 Modelled: 314 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp Phyre2 PDB 2zau chain B Region: 42 - 342 Aligned: 270 Modelled: 280 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus Phyre2 PDB 3mcq chain A Region: 29 - 338 Aligned: 286 Modelled: 303 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution Phyre2 PDB 2z1t chain A Region: 26 - 345 Aligned: 291 Modelled: 306 Confidence: 100.0% Identity: 21% PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype Phyre2 PDB 2rb9 chain D Region: 21 - 342 Aligned: 297 Modelled: 307 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype Phyre2 PDB 2zod chain B Region: 24 - 342 Aligned: 287 Modelled: 306 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus Phyre2 PDB 3c9u chain B Region: 19 - 338 Aligned: 281 Modelled: 317 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp Phyre2 PDB 2z1e chain A Region: 40 - 343 Aligned: 275 Modelled: 291 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) Phyre2 PDB 2yxz chain A Region: 24 - 345 Aligned: 288 Modelled: 321 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 Phyre2 PDB 1vqv chain B Region: 19 - 345 Aligned: 280 Modelled: 327 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus Phyre2 PDB 3ac6 chain A Region: 32 - 345 Aligned: 263 Modelled: 271 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus Phyre2 PDB 2hs0 chain A Region: 40 - 345 Aligned: 257 Modelled: 284 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp Phyre2 PDB 3d54 chain I Region: 43 - 345 Aligned: 257 Modelled: 287 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima Phyre2 1 c3m84A_ 2 c1cliD_ 3 c2z01A_ 4 c3mdoB_ 5 c2btuB_ 6 c3kizA_ 7 c2v9yA_ 8 c3fd5B_ 9 c2zauB_ 10 c3mcqA_ 11 c2z1tA_ 12 c2rb9D_ 13 c2zodB_ 14 c3c9uB_ 15 c2z1eA_ 16 c2yxzA_ 17 c1vqvB_ 18 c3ac6A_ 19 c2hs0A_ 20 c3d54I_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3m84A_ 100.0 41 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis 2 c1cliD_ 100.0 100 PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution 3 c2z01A_ 100.0 48 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus 4 c3mdoB_ 100.0 25 PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution 5 c2btuB_ 100.0 55 PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. 6 c3kizA_ 100.0 25 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 7 c2v9yA_ 100.0 49 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase 8 c3fd5B_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp 9 c2zauB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus 10 c3mcqA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution 11 c2z1tA_ 100.0 21 PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype 12 c2rb9D_ 100.0 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype 13 c2zodB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 14 c3c9uB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp 15 c2z1eA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) 16 c2yxzA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 17 c1vqvB_ 100.0 15 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus 18 c3ac6A_ 100.0 17 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus 19 c2hs0A_ 100.0 20 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp 20 c3d54I_ 100.0 20 PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima 21 d1clia1 not modelled 100.0 100 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 22 d1clib1 not modelled 100.0 100 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 23 d1clia2 not modelled 100.0 100 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 24 c1t3tA_ not modelled 100.0 14 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 25 d3c9ua1 not modelled 100.0 22 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 26 d2zaua1 not modelled 100.0 14 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 27 d2zoda2 not modelled 99.9 18 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 28 d2z1ea2 not modelled 99.9 18 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 29 d3c9ua2 not modelled 99.9 13 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 30 d2z1ea1 not modelled 99.9 27 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 31 d2zoda1 not modelled 99.9 16 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 32 d1vk3a2 not modelled 99.9 14 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 33 d1vk3a3 not modelled 99.9 18 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 34 d1vk3a1 not modelled 99.8 21 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 35 d1t3ta6 not modelled 99.8 11 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 36 d1t3ta7 not modelled 99.7 22 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 37 d1t3ta4 not modelled 99.3 18 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 38 d1t3ta5 not modelled 98.6 9 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 39 d1to3a_ not modelled 84.6 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 40 d3dhxa1 not modelled 71.2 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 41 c3dzvB_ not modelled 58.5 21 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 42 d1q3oa_ not modelled 49.5 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 43 d2qrra1 not modelled 49.3 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 44 c1jyeA_ not modelled 49.0 29 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 45 d1jyea_ not modelled 49.0 29 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 46 c3o1hB_ not modelled 46.7 16 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 47 c3d8uA_ not modelled 42.9 9 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 48 c3jrkG_ not modelled 42.4 21 PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes 49 c2vk2A_ not modelled 41.2 9 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 50 c3rotA_ not modelled 40.8 13 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 51 c3l4fD_ not modelled 40.8 16 PDB header:signaling protein/protein binding Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein PDBTitle: crystal structure of betapix coiled-coil domain and shank2 pdz complex 52 c3gndC_ not modelled 37.0 11 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 53 c2eg5C_ not modelled 36.7 22 PDB header:transferase Chain: C: PDB Molecule:xanthosine methyltransferase; PDBTitle: the structure of xanthosine methyltransferase 54 c3l49D_ not modelled 35.8 9 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 55 c3bgwD_ not modelled 35.8 8 PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase 56 c2qjhH_ not modelled 35.8 24 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 57 c2rjoA_ not modelled 35.0 15 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 58 c2q6tB_ not modelled 34.8 20 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 59 c3qglD_ not modelled 34.4 12 PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3 60 c2xkxB_ not modelled 31.7 17 PDB header:structural protein Chain: B: PDB Molecule:disks large homolog 4; PDBTitle: single particle analysis of psd-95 in negative stain 61 d1v8aa_ not modelled 31.4 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 62 d1m6ex_ not modelled 30.9 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Salicylic acid carboxyl methyltransferase (SAMT) 63 d8abpa_ not modelled 30.6 3 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 64 d1iz0a2 not modelled 30.1 5 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 65 c3jy6B_ not modelled 29.9 18 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 66 d2csua1 not modelled 29.9 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 67 c3cs3A_ not modelled 29.4 9 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 68 c3qi7A_ not modelled 29.2 22 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 69 c3ma0A_ not modelled 28.9 9 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 70 c3l6uA_ not modelled 28.6 6 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 71 c3ksmA_ not modelled 28.3 13 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 72 c3shwA_ not modelled 28.0 18 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 73 c3e61A_ not modelled 27.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 74 d1guda_ not modelled 26.8 17 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 75 c3bblA_ not modelled 25.7 3 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 76 c3fokH_ not modelled 25.5 8 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115 77 d2nzug1 not modelled 25.1 6 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 78 d2dria_ not modelled 24.7 15 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 79 c3jvdA_ not modelled 24.2 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum 80 c2jreA_ not modelled 24.2 13 PDB header:de novo protein Chain: A: PDB Molecule:c60-1 pdz domain peptide; PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis 81 c3diwB_ not modelled 23.3 19 PDB header:signaling protein/cell adhesion Chain: B: PDB Molecule:tax1-binding protein 3; PDBTitle: c-terminal beta-catenin bound tip-1 structure 82 d2cz4a1 not modelled 23.2 8 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 83 d1o6xa_ not modelled 23.0 16 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 84 c3egcF_ not modelled 22.8 15 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 85 d1kkha2 not modelled 22.6 19 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 86 c3bilA_ not modelled 22.3 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 87 d1pcaa1 not modelled 22.2 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 88 c3d02A_ not modelled 22.1 3 PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution 89 c3gybB_ not modelled 22.1 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 90 c3o74A_ not modelled 22.1 12 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 91 d1tjya_ not modelled 22.0 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 92 d1tlfa_ not modelled 22.0 30 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 93 c2ioyB_ not modelled 21.9 12 PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein 94 d1pbaa_ not modelled 21.8 8 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 95 d2boaa2 not modelled 21.7 12 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 96 c3hs3A_ not modelled 21.5 18 PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus 97 c3e3mA_ not modelled 21.5 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 98 d1uita_ not modelled 21.4 29 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 99 d1pyta_ not modelled 21.4 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 100 c2fn9A_ not modelled 21.3 10 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 101 c3kkeA_ not modelled 21.0 6 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 102 c3eggC_ not modelled 20.8 16 PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0