Emaill.a.kelley@imperial.ac.uk
DescriptionP0AFW0
DateThu Jan 5 11:27:24 GMT 2012
Unique Job ID483b9ca1e51619cf

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c1m1gB_



100.0 21 PDB header:transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1)
2c2ougC_



100.0 98 PDB header:transcription
Chain: C: PDB Molecule:transcriptional activator rfah;
PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution
3c2xhcA_



100.0 23 PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg)
4c3p8bB_



99.9 21 PDB header:transferase/transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5
5c2k06A_



99.9 17 PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg
6d1nz8a_



99.9 26 Fold:Ferredoxin-like
Superfamily:N-utilization substance G protein NusG, N-terminal domain
Family:N-utilization substance G protein NusG, N-terminal domain
7d1m1ha2



99.9 18 Fold:Ferredoxin-like
Superfamily:N-utilization substance G protein NusG, N-terminal domain
Family:N-utilization substance G protein NusG, N-terminal domain
8d1nppa2



99.4 19 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
9d1nz9a_



99.4 21 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
10c2jvvA_



99.4 20 PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of e. coli nusg carboxyterminal domain
11c2kvqG_



99.4 20 PDB header:transcription
Chain: G: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of nuse:nusg-ctd complex
12c3ewgA_



97.2 17 PDB header:transcription
Chain: A: PDB Molecule:putative transcription antitermination protein nusg;
PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii
13c2e6zA_



97.0 21 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5
14c2exuA_



96.6 11 PDB header:transcription
Chain: A: PDB Molecule:transcription initiation protein spt4/spt5;
PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain
15d2do3a1



96.1 26 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:SPT5 KOW domain-like
16c3h7hB_



95.9 23 PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt5;
PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
17c2ckkA_



95.8 11 PDB header:nuclear protein
Chain: A: PDB Molecule:kin17;
PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17.
18c2e70A_



95.6 20 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5
19d1vqot1



95.5 20 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
20c3iz5Y_



95.3 8 PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
21c2zkrt_



not modelled 95.3 10 PDB header:ribosomal protein/rna
Chain: T: PDB Molecule:rna expansion segment es39 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
22c4a1cS_



not modelled 95.1 16 PDB header:ribosome
Chain: S: PDB Molecule:rpl26;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
23d2gycs1



not modelled 93.3 16 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
24d2zjrr1



not modelled 93.2 18 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
25c2jz2A_



not modelled 90.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
26c1s1iU_



not modelled 85.9 14 PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l26-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
27c3bboW_



not modelled 83.7 17 PDB header:ribosome
Chain: W: PDB Molecule:ribosomal protein l24;
PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
28c3iz5N_



not modelled 81.4 13 PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
29d2j01y1



not modelled 79.1 21 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
30c3izcN_



not modelled 79.0 23 PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
31d2joya1



not modelled 77.8 9 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal protein L14e
32c4a19F_



not modelled 69.9 17 PDB header:ribosome
Chain: F: PDB Molecule:rpl14;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
33c2ftcN_



not modelled 67.9 32 PDB header:ribosome
Chain: N: PDB Molecule:mitochondrial ribosomal protein l24;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
34d1ib8a1



not modelled 63.0 10 Fold:Sm-like fold
Superfamily:YhbC-like, C-terminal domain
Family:YhbC-like, C-terminal domain
35d1nxza1



not modelled 51.0 9 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
36d1vqoq1



not modelled 46.4 19 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
37c3kbgA_



not modelled 37.8 18 PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s4e;
PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28.
38c4a18N_



not modelled 36.9 17 PDB header:ribosome
Chain: N: PDB Molecule:rpl27;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
39c3qiiA_



not modelled 36.5 10 PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
40d1rkia1



not modelled 31.3 10 Fold:THUMP domain
Superfamily:THUMP domain-like
Family:PAE0736-like
41d2vv5a1



not modelled 29.8 14 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Mechanosensitive channel protein MscS (YggB), middle domain
42d2pu9b1



not modelled 29.0 18 Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain
43d1vhka1



not modelled 28.0 14 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
44d2zgwa1



not modelled 27.9 34 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Biotin repressor (BirA)
45d1h3ga1



not modelled 25.2 36 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
46c2dxcG_



not modelled 24.0 19 PDB header:hydrolase
Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha;
PDBTitle: recombinant thiocyanate hydrolase, fully-matured form
47c3ikmD_



not modelled 23.0 27 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme
48c3iz6D_



not modelled 22.5 16 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
49c3pifD_



not modelled 21.4 17 PDB header:hydrolase
Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1);
PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese
50c2gpzC_



not modelled 21.1 17 PDB header:hydrolase
Chain: C: PDB Molecule:transthyretin-like protein;
PDBTitle: transthyretin-like protein from salmonella dublin
51c3j04A_



not modelled 17.9 13 PDB header:structural protein
Chain: A: PDB Molecule:myosin-11;
PDBTitle: em structure of the heavy meromyosin subfragment of chick smooth2 muscle myosin with regulatory light chain in phosphorylated state
52d1a8pa1



not modelled 17.7 13 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
53c3d8tB_



not modelled 17.5 17 PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: thermus thermophilus uroporphyrinogen iii synthase
54c2h1xB_



not modelled 17.3 11 PDB header:hydrolase
Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as
PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein)
55c2vc8A_



not modelled 16.6 20 PDB header:protein-binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3)
56d1yt8a4



not modelled 16.6 12 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
57d1ugpb_



not modelled 15.5 24 Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
58d1wd7a_



not modelled 15.4 17 Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
59c2k3aA_



not modelled 15.2 18 PDB header:hydrolase
Chain: A: PDB Molecule:chap domain protein;
PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11
60c2equA_



not modelled 14.9 10 PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
61d1v29b_



not modelled 14.7 10 Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
62c2xzmW_



not modelled 14.2 14 PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s4;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
63d2hqha1



not modelled 14.0 14 Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
64c3izcG_



not modelled 13.9 18 PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
65c2vv5D_



not modelled 13.6 14 PDB header:membrane protein
Chain: D: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: the open structure of mscs
66c3p8dB_



not modelled 13.4 7 PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
67d1jr2a_



not modelled 12.3 24 Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
68c1jr2A_



not modelled 12.3 24 PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: structure of uroporphyrinogen iii synthase
69d1ixda_



not modelled 12.3 20 Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
70c1x60A_



not modelled 12.1 3 PDB header:hydrolase
Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine
PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc
71d1f86a_



not modelled 12.1 0 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
72d2qdyb1



not modelled 12.0 15 Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
73d1s7ia_



not modelled 11.9 29 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:DGPF domain (Pfam 04946)
74d1kgia_



not modelled 11.5 0 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
75d2coya1



not modelled 11.3 11 Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
76c2hqxB_



not modelled 10.7 11 PDB header:transcription
Chain: B: PDB Molecule:p100 co-activator tudor domain;
PDBTitle: crystal structure of human p100 tudor domain conserved2 region
77d2hqxa1



not modelled 10.7 11 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
78c2rm4A_



not modelled 10.6 20 PDB header:protein binding
Chain: A: PDB Molecule:cg6311-pb;
PDBTitle: solution structure of the lsm domain of dm edc3 (enhancer2 of decapping 3)
79d1e0ta3



not modelled 10.5 12 Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:Pyruvate kinase, C-terminal domain
80d2diqa1



not modelled 10.3 11 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
81c2ky9A_



not modelled 10.3 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ydhk;
PDBTitle: solution nmr structure of ydhk c-terminal domain from b.subtilis,2 northeast structural genomics consortium target target sr518
82c3qz9D_



not modelled 10.1 20 PDB header:lyase
Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit;
PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida.
83d2p3ha1



not modelled 10.1 10 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
84d2hlja1



not modelled 10.0 11 Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:4HBT-like
85c1nwxN_



not modelled 9.5 20 PDB header:ribosome
Chain: N: PDB Molecule:ribosomal protein l19;
PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773
86c3izca_



not modelled 9.4 18 PDB header:ribosome
Chain: A: PDB Molecule:60s ribosomal protein rpl1 (l1p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
87d1fdra1



not modelled 9.4 33 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
88d1ttaa_



not modelled 9.3 0 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
89d2zjrm1



not modelled 9.2 13 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal protein L19
90c3izbD_



not modelled 9.1 16 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
91c1vhkA_



not modelled 9.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yqeu;
PDBTitle: crystal structure of an hypothetical protein
92c2eqmA_



not modelled 9.0 11 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens]
93d1rw1a_



not modelled 8.9 25 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ArsC-like
94c1i84V_



not modelled 8.9 14 PDB header:contractile protein
Chain: V: PDB Molecule:smooth muscle myosin heavy chain;
PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment.
95d1oo2a_



not modelled 8.8 6 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
96c3nnhA_



not modelled 8.5 17 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:cugbp elav-like family member 1;
PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna
97c3q1jA_



not modelled 8.4 10 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20
98c2k3yA_



not modelled 8.4 14 PDB header:transcription regulator
Chain: A: PDB Molecule:chromatin modification-related protein eaf3;
PDBTitle: solution structure of eaf3 chromo barrel domain bound to2 histone h3 with a dimethyllysine analog h3k36me2
99c2pmzV_



not modelled 8.3 13 PDB header:translation, transferase
Chain: V: PDB Molecule:dna-directed rna polymerase subunit h;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus