Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	W	S	R	R	Q	F	L	T	G	V	G	V	L	A	A	V	S	G	T	A	G	R	V	V	A	K	T	L	N	I	N	G	V	R	Y	G	M	V	H	D	E	S	L	C	I	G	C	T	A	C	M	D	A	C	R	E	V	N
Secondary structure
SS confidence
Disorder		?	?	?	?														?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	V	P	E	G	V	S	R	L	T	I	I	R	S	E	P	Q	G	E	F	P	D	V	K	Y	R	F	F	R	K	S	C	Q	H	C	D	H	A	P	C	V	D	V	C	P	T	G	A	S	F	R	D	A	A	S	G	I	V	D	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	P	D	L	C	V	G	C	Q	Y	C	I	A	A	C	P	Y	R	V	R	F	I	H	P	V	T	K	T	A	D	K	C	D	F	C	R	K	T	N	L	Q	A	G	K	L	P	A	C	V	E	A	C	P	T	K	A	L	T	F	G
Secondary structure
SS confidence
Disorder																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence		N	L	D	D	P	N	S	E	I	S	Q	L	L	R	Q	K	P	T	Y	R	Y	K	L	A	L	G	T	K	P	K	L	Y	R	V	P	F	K	Y	G	E	V	S	Q
Secondary structure
SS confidence
Disorder																		?	?	?		?																?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ivf chain B Region: 34 - 217 Aligned: 183 Modelled: 184 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 1ti2 chain F Region: 35 - 220 Aligned: 181 Modelled: 186 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 1kqf chain B Region: 19 - 214 Aligned: 195 Modelled: 196 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1kqf chain B domain 1 Region: 19 - 220 Aligned: 201 Modelled: 202 Confidence: 100.0% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2vpy chain B Region: 35 - 223 Aligned: 185 Modelled: 189 Confidence: 100.0% Identity: 46% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1h0h chain B Region: 37 - 221 Aligned: 184 Modelled: 185 Confidence: 100.0% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1y5i chain B domain 1 Region: 35 - 216 Aligned: 181 Modelled: 182 Confidence: 100.0% Identity: 33% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1vlf chain N domain 2 Region: 35 - 220 Aligned: 181 Modelled: 186 Confidence: 100.0% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2zvs chain B Region: 119 - 195 Aligned: 73 Modelled: 77 Confidence: 99.3% Identity: 19% PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli Phyre2 PDB 2fug chain G Region: 112 - 185 Aligned: 64 Modelled: 74 Confidence: 99.2% Identity: 36% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2fug chain 9 domain 1 Region: 112 - 185 Aligned: 64 Modelled: 74 Confidence: 99.2% Identity: 36% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1xer chain A Region: 105 - 181 Aligned: 67 Modelled: 77 Confidence: 99.2% Identity: 36% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 2fgo chain A Region: 118 - 199 Aligned: 77 Modelled: 82 Confidence: 99.1% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa Phyre2 PDB 2v2k chain B Region: 86 - 195 Aligned: 101 Modelled: 110 Confidence: 99.1% Identity: 21% PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis Phyre2 PDB 3gyx chain J Region: 118 - 185 Aligned: 58 Modelled: 68 Confidence: 99.1% Identity: 31% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 1blu chain A Region: 119 - 196 Aligned: 68 Modelled: 78 Confidence: 99.1% Identity: 18% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1hfe chain L domain 2 Region: 113 - 180 Aligned: 58 Modelled: 68 Confidence: 99.1% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1hfe chain L Region: 112 - 201 Aligned: 78 Modelled: 90 Confidence: 99.1% Identity: 22% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 7fd1 chain A Region: 86 - 145 Aligned: 58 Modelled: 60 Confidence: 99.1% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 3c8y chain A domain 3 Region: 27 - 143 Aligned: 81 Modelled: 81 Confidence: 99.1% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2pq4 chain B Region: 1 - 35 Aligned: 35 Modelled: 35 Confidence: 91.5% Identity: 29% PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide Phyre2 1 c2ivfB_ 2 c1ti2F_ 3 c1kqfB_ 4 d1kqfb1 5 c2vpyB_ 6 d1h0hb_ 7 d1y5ib1 8 d1vlfn2 9 c2zvsB_ 10 c2fugG_ 11 d2fug91 12 d1xera_ 13 c2fgoA_ 14 c2v2kB_ 15 c3gyxJ_ 16 d1blua_ 17 d1hfel2 18 c1hfeL_ 19 d7fd1a_ 20 d3c8ya3 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 c2pq4B_ 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ivfB_ 100.0 34 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 2 c1ti2F_ 100.0 27 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 3 c1kqfB_ 100.0 29 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 4 d1kqfb1 100.0 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 5 c2vpyB_ 100.0 46 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 6 d1h0hb_ 100.0 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 7 d1y5ib1 100.0 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 8 d1vlfn2 100.0 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 c2zvsB_ 99.3 19 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 10 c2fugG_ 99.2 36 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 11 d2fug91 99.2 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 12 d1xera_ 99.2 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 13 c2fgoA_ 99.1 18 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 14 c2v2kB_ 99.1 21 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 15 c3gyxJ_ 99.1 31 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 16 d1blua_ 99.1 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 17 d1hfel2 99.1 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 18 c1hfeL_ 99.1 22 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 19 d7fd1a_ 99.1 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 20 d3c8ya3 99.1 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 21 c1gx7A_ not modelled 99.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 22 d1rgva_ not modelled 99.1 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 23 c1gthD_ not modelled 99.0 23 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 24 d3c7bb1 not modelled 99.0 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 d1jb0c_ not modelled 99.0 40 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 26 d2c42a5 not modelled 99.0 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 27 c2c3yA_ not modelled 99.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 28 d1h98a_ not modelled 99.0 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 29 d1jnrb_ not modelled 98.9 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 30 d1gtea5 not modelled 98.9 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 31 d1bc6a_ not modelled 98.9 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 32 c2gmhA_ not modelled 98.9 28 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 33 d2fdna_ not modelled 98.8 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 34 d1dura_ not modelled 98.8 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 35 d1fcaa_ not modelled 98.8 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 36 d1clfa_ not modelled 98.8 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 37 d2fug34 not modelled 98.7 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 38 c1c4cA_ not modelled 98.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 39 d1iqza_ not modelled 98.6 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 40 d1vjwa_ not modelled 98.6 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 41 d1sj1a_ not modelled 98.6 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 42 d2gmha3 not modelled 98.6 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 43 c1dwlA_ not modelled 98.5 25 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 44 d1fxra_ not modelled 98.4 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 45 c3c7bE_ not modelled 98.3 25 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 46 c2v4jE_ not modelled 98.2 19 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 47 c2fugC_ not modelled 98.1 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 48 c3bk7A_ not modelled 98.1 31 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 49 c3c7bA_ not modelled 97.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 50 c2v4jA_ not modelled 97.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 51 d2bs2b1 not modelled 97.5 21 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 d1kf6b1 not modelled 97.2 27 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 c2bs2E_ not modelled 96.8 28 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 54 c1nekB_ not modelled 96.7 19 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 55 d1nekb1 not modelled 96.7 19 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 56 c2h89B_ not modelled 96.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 57 c3cf4A_ not modelled 96.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 58 c2b76N_ not modelled 96.6 26 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 59 d2v4jb1 not modelled 96.2 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 60 c2vdcI_ not modelled 93.3 17 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 61 c2pq4B_ 91.5 29 PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide 62 d3c7ba1 not modelled 90.6 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 63 c2e76D_ not modelled 85.5 19 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 64 d2v4ja1 not modelled 81.6 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 65 c2fynO_ not modelled 78.2 29 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 66 c1p84E_ not modelled 72.2 13 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 67 c2fyuE_ not modelled 59.8 20 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 68 d1gtea1 not modelled 57.4 27 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 69 c2htfA_ not modelled 44.7 62 PDB header:transferase Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: the solution structure of the brct domain from human2 polymerase reveals homology with the tdt brct domain 70 d1fxda_ not modelled 42.7 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 71 c1moxB_ not modelled 17.0 17 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha 72 c1g8jC_ not modelled 16.9 26 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 73 d1djqa3 not modelled 15.7 40 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 74 c2a91A_ not modelled 13.7 23 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3 75 d1yuza2 not modelled 11.8 24 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 76 d2adra2 not modelled 10.3 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 77 c2eqpA_ not modelled 10.2 17 PDB header:transcription Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the stn_tnfrsf12a_tnfr domain of2 tumor necrosis factor receptor superfamily member 12a3 precursor 78 c2fugA_ not modelled 9.9 23 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 79 d2e74d2 not modelled 8.0 22 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 80 c2hr7B_ not modelled 7.3 15 PDB header:transferase Chain: B: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (domains 1-3) 81 d1lkoa2 not modelled 7.2 24 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 82 c2a45J_ not modelled 7.1 23 PDB header:hydrolase/hydrolase inhibitor Chain: J: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin 83 c3gteB_ not modelled 7.0 21 PDB header:electron transport, oxidoreductase Chain: B: PDB Molecule:ddmc; PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron 84 c2ja1A_ not modelled 7.0 13 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor. 85 c1yv0I_ not modelled 7.0 33 PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state 86 c3d89A_ not modelled 6.9 27 PDB header:electron transport Chain: A: PDB Molecule:rieske domain-containing protein; PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus 87 d2r4qa1 not modelled 6.9 38 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 88 c2dunA_ not modelled 6.0 44 PDB header:transferase Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: solution structure of brct domain of dna polymerase mu 89 c2ww9B_ not modelled 6.0 7 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 90 d1nnqa2 not modelled 5.7 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 91 d1dxga_ not modelled 5.6 12 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Desulforedoxin 92 c3geiB_ not modelled 5.5 50 PDB header:hydrolase Chain: B: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp 93 c1ytzI_ not modelled 5.3 29 PDB header:contractile protein Chain: I: PDB Molecule:troponin i; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 activated state

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0