Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	S	L	S	E	G	T	T	A	G	Y	Q	Q	I	H	D	G	I	I	H	L	V	D	S	A	R	T	E	T	V	R	S	V	N	A	L	M	T	A	T	Y	Q	E	I	G	R	R	I	V	E	F	E	Q	G	G	E	A	R	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																																													?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	Y	G	A	Q	L	I	K	R	L	S	K	D	L	C	L	R	Y	K	R	G	F	S	A	K	N	L	R	Q	M	R	L	F	Y	L	F	F	Q	H	V	E	I	H	Q	T	M	S	G	E	L	T	P	L	G	I	P	Q	T	P	S
Secondary structure
SS confidence
Disorder																																												?	?					?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	E	F	P	S	A	K	I	W	Q	T	L	S	A	K	S	F	P	L	P	R	S	T	Y	V	R	L	L	S	V	K	N	A	D	A	R	S	F	Y	E	K	E	T	L	R	C	G	W	S	V	R	Q	L	E	R	Q	I	A	T	Q
Secondary structure
SS confidence
Disorder		?	?	?	?									?	?	?	?		?																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	Y	E	R	T	L	L	S	H	D	K	S	A	M	L	Q	Q	H	A	P	A	E	T	H	I	L	P	Q	Q	A	I	R	D	P	F	V	L	E	F	L	E	L	K	D	E	Y	S	E	S	D	F	E	E	A	L	I	N	H	L	M
Secondary structure
SS confidence
Disorder						?	?	?			?	?	?	?				?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	F	M	L	E	L	G	D	D	F	A	F	V	G	R	Q	R	R	L	R	I	D	D	N	W	F	R	V	D	L	L	F	F	H	R	R	L	R	C	L	L	I	V	D	L	K	V	G	K	F	S	Y	S	D	A	G	Q	M	N	M
Secondary structure
SS confidence
Disorder																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Y	L	N	Y	A	K	E	H	W	T	L	P	D	E	N	P	P	I	G	L	V	L	C	A	E	K	G	A	G	E	A	H	Y	A	L	A	G	L	P	N	T	V	L	A	S	E	Y	K	M	Q	L	P	D	E	K	R	L	A	D	E
Secondary structure
SS confidence
Disorder													?	?	?																								?	?	?	?	?		?			?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence		L	V	R	T	Q	A	V	L	E	E	G	Y	R	R	R
Secondary structure
SS confidence
Disorder											?	?		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vld chain A Region: 215 - 334 Aligned: 107 Modelled: 116 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi Phyre2 PDB 1w36 chain B domain 3 Region: 267 - 310 Aligned: 42 Modelled: 42 Confidence: 92.9% Identity: 19% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain Phyre2 PDB 1w36 chain E Region: 267 - 310 Aligned: 42 Modelled: 44 Confidence: 91.9% Identity: 19% PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex Phyre2 PDB 1az3 chain A Region: 231 - 288 Aligned: 49 Modelled: 58 Confidence: 56.3% Identity: 14% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Restriction endonuclease EcoRV Phyre2 PDB 1a9x chain A domain 1 Region: 154 - 175 Aligned: 22 Modelled: 22 Confidence: 54.2% Identity: 27% Fold: Carbamoyl phosphate synthetase, large subunit connection domain Superfamily: Carbamoyl phosphate synthetase, large subunit connection domain Family: Carbamoyl phosphate synthetase, large subunit connection domain Phyre2 PDB 1vz0 chain A domain 1 Region: 138 - 174 Aligned: 36 Modelled: 37 Confidence: 41.9% Identity: 33% Fold: DNA/RNA-binding 3-helical bundle Superfamily: KorB DNA-binding domain-like Family: KorB DNA-binding domain-like Phyre2 PDB 2bto chain A domain 1 Region: 61 - 80 Aligned: 20 Modelled: 20 Confidence: 37.4% Identity: 20% Fold: Tubulin nucleotide-binding domain-like Superfamily: Tubulin nucleotide-binding domain-like Family: Tubulin, GTPase domain Phyre2 PDB 3h1t chain A Region: 263 - 301 Aligned: 39 Modelled: 39 Confidence: 36.4% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Phyre2 PDB 1vhs chain A Region: 249 - 278 Aligned: 29 Modelled: 30 Confidence: 34.3% Identity: 28% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 PDB 3h4r chain A Region: 281 - 374 Aligned: 81 Modelled: 94 Confidence: 32.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease 8; PDBTitle: crystal structure of e. coli rece exonuclease Phyre2 PDB 3ot2 chain B Region: 218 - 304 Aligned: 87 Modelled: 87 Confidence: 31.9% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution Phyre2 PDB 3ot2 chain A Region: 218 - 304 Aligned: 87 Modelled: 87 Confidence: 31.9% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution Phyre2 PDB 3njc chain A Region: 41 - 63 Aligned: 22 Modelled: 22 Confidence: 29.6% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yslb protein; PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460. Phyre2 PDB 3ga2 chain A Region: 314 - 345 Aligned: 32 Modelled: 32 Confidence: 29.5% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 Phyre2 PDB 3fov chain A Region: 247 - 289 Aligned: 37 Modelled: 43 Confidence: 29.4% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris Phyre2 PDB 1yio chain A domain 2 Region: 305 - 375 Aligned: 65 Modelled: 71 Confidence: 27.6% Identity: 20% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 2k3k chain A domain 1 Region: 221 - 253 Aligned: 33 Modelled: 33 Confidence: 26.0% Identity: 27% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Canonical RBD Phyre2 PDB 1m0d chain A Region: 234 - 298 Aligned: 59 Modelled: 65 Confidence: 25.1% Identity: 17% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Endonuclease I (Holliday junction resolvase) Phyre2 PDB 1tub chain A domain 1 Region: 61 - 80 Aligned: 20 Modelled: 20 Confidence: 22.8% Identity: 20% Fold: Tubulin nucleotide-binding domain-like Superfamily: Tubulin nucleotide-binding domain-like Family: Tubulin, GTPase domain Phyre2 PDB 1w0b chain A Region: 298 - 312 Aligned: 15 Modelled: 15 Confidence: 22.1% Identity: 40% Fold: Spectrin repeat-like Superfamily: Alpha-hemoglobin stabilizing protein AHSP Family: Alpha-hemoglobin stabilizing protein AHSP Phyre2 1 c2vldA_ 2 d1w36b3 3 c1w36E_ 4 d1az3a_ 5 d1a9xa1 6 d1vz0a1 7 d2btoa1 8 c3h1tA_ 9 d1vhsa_ 10 c3h4rA_ 11 c3ot2B_ 12 c3ot2A_ 13 c3njcA_ 14 c3ga2A_ 15 c3fovA_ 16 d1yioa2 17 d2k3ka1 18 d1m0da_ 19 d1tuba1 20 d1w0ba_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vldA_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 2 d1w36b3 92.9 19 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain 3 c1w36E_ 91.9 19 PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex 4 d1az3a_ 56.3 14 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 5 d1a9xa1 54.2 27 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 6 d1vz0a1 41.9 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 7 d2btoa1 37.4 20 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 8 c3h1tA_ 36.4 21 PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 9 d1vhsa_ 34.3 28 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 10 c3h4rA_ 32.6 17 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease 8; PDBTitle: crystal structure of e. coli rece exonuclease 11 c3ot2B_ 31.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution 12 c3ot2A_ 31.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution 13 c3njcA_ 29.6 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yslb protein; PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460. 14 c3ga2A_ 29.5 22 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 15 c3fovA_ 29.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 16 d1yioa2 27.6 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 17 d2k3ka1 26.0 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 18 d1m0da_ 25.1 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 19 d1tuba1 22.8 20 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 20 d1w0ba_ 22.1 40 Fold:Spectrin repeat-like Superfamily:Alpha-hemoglobin stabilizing protein AHSP Family:Alpha-hemoglobin stabilizing protein AHSP 21 d1tubb1 not modelled 21.6 15 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 22 d1d2zb_ not modelled 21.4 26 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 23 c3cueJ_ not modelled 21.4 16 PDB header:protein transport Chain: J: PDB Molecule:transport protein particle 22 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab2 ypt1p 24 c2jg6A_ not modelled 20.0 26 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 25 d1sjqa_ not modelled 19.7 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 26 d1xmxa_ not modelled 18.8 10 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein VC1899 27 c2az1B_ not modelled 18.7 16 PDB header:transferase Chain: B: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: structure of a halophilic nucleoside diphosphate kinase2 from halobacterium salinarum 28 c3edlA_ not modelled 18.2 20 PDB header:structural protein Chain: A: PDB Molecule:alpha-tubulin; PDBTitle: kinesin13-microtubule ring complex 29 d1z8ua1 not modelled 17.9 40 Fold:Spectrin repeat-like Superfamily:Alpha-hemoglobin stabilizing protein AHSP Family:Alpha-hemoglobin stabilizing protein AHSP 30 d1sx5a_ not modelled 17.7 14 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 31 c2jlmE_ not modelled 17.4 22 PDB header:transferase Chain: E: PDB Molecule:putative phosphinothricin n-acetyltransferase; PDBTitle: structure of a putative acetyltransferase (aciad1637) from2 acinetobacter baylyi adp1 32 c1s7fA_ not modelled 17.1 14 PDB header:transferase Chain: A: PDB Molecule:acetyl transferase; PDBTitle: riml- ribosomal l7/l12 alpha-n-protein acetyltransferase crystal form2 i (apo) 33 c2o37A_ not modelled 17.0 6 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 34 c2jh9A_ not modelled 16.8 23 PDB header:viral protein Chain: A: PDB Molecule:vp4 core protein; PDBTitle: the structure of bluetongue virus vp4 reveals a2 multifunctional rna-capping production-line 35 c2e5jA_ not modelled 16.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing 36 c3cxjB_ not modelled 15.8 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 37 c3apqB_ not modelled 15.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 38 d1nkua_ not modelled 15.4 26 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag) 39 d1w25a1 not modelled 14.9 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 40 c1vbkA_ not modelled 14.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 41 d2di0a1 not modelled 14.6 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 42 c2w4zB_ not modelled 14.4 38 PDB header:virus Chain: B: PDB Molecule:caulobacter bacteriophage 5; PDBTitle: caulobacter bacteriophage 5 43 c3efcA_ not modelled 14.2 15 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein assembly factor yaet; PDBTitle: crystal structure of yaet periplasmic domain 44 d1whya_ not modelled 13.9 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 45 d1wdjb_ not modelled 13.9 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein TT1808 (TTHA1514) 46 c1m6vE_ not modelled 13.8 27 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 47 d2gxba1 not modelled 13.1 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 48 d1kxpd3 not modelled 13.1 22 Fold:Serum albumin-like Superfamily:Serum albumin-like Family:Serum albumin-like 49 c3pgwP_ not modelled 13.0 27 PDB header:splicing/dna/rna Chain: P: PDB Molecule:u1-a; PDBTitle: crystal structure of human u1 snrnp 50 c1xaxA_ not modelled 13.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004; PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae 51 d1qkka_ not modelled 12.8 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 52 d1kn0a_ not modelled 12.8 30 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 53 c2qv0A_ not modelled 12.7 15 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 54 d1wdja_ not modelled 12.6 18 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein TT1808 (TTHA1514) 55 d2b7oa1 not modelled 12.6 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase 56 c3eplA_ not modelled 12.4 20 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 57 d1xe1a_ not modelled 12.3 30 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 58 c1xe1A_ not modelled 12.3 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf0907; PDBTitle: hypothetical protein from pyrococcus furiosus pfu-880080-001 59 c2i79B_ not modelled 12.3 17 PDB header:transferase Chain: B: PDB Molecule:acetyltransferase, gnat family; PDBTitle: the crystal structure of the acetyltransferase of gnat family from2 streptococcus pneumoniae 60 c3hdgE_ not modelled 12.2 12 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 61 d1gefa_ not modelled 12.0 31 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 62 c2kqxA_ not modelled 11.4 10 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 63 c3qpbB_ not modelled 11.4 38 PDB header:transferase Chain: B: PDB Molecule:uridine phosphorylase; PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily 64 d2rnrb1 not modelled 11.4 22 Fold:PH domain-like barrel Superfamily:PH domain-like Family:TFIIH domain 65 c2pd0D_ not modelled 11.1 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: protein cgd2_2020 from cryptosporidium parvum 66 c2oziA_ not modelled 11.1 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 67 d1vbka2 not modelled 10.9 20 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 68 d1xm5a_ not modelled 10.7 10 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 69 d1mnta_ not modelled 10.6 12 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 70 d1fj7a_ not modelled 10.6 21 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 71 c3mg9A_ not modelled 10.5 30 PDB header:transferase/antibiotic Chain: A: PDB Molecule:teg12; PDBTitle: teg 12 binary structure complexed with the teicoplanin aglycone 72 c2dmxA_ not modelled 10.3 17 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 73 d1v4na_ not modelled 10.1 33 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 74 c1yewC_ not modelled 10.1 29 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 75 d1a9nb_ not modelled 9.5 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 76 c3f6cB_ not modelled 9.4 4 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 77 d1tvia_ not modelled 9.3 12 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 78 d2g9ha2 not modelled 9.0 27 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 79 c1wtaA_ not modelled 9.0 15 PDB header:transferase Chain: A: PDB Molecule:5'-methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum2 pernix (r32 form) 80 d1hh1a_ not modelled 9.0 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 81 c2btoA_ not modelled 8.7 20 PDB header:cytoskeletal protein Chain: A: PDB Molecule:tubulin btuba; PDBTitle: structure of btuba from prosthecobacter dejongeii 82 c2p1lF_ not modelled 8.6 31 PDB header:apoptosis Chain: F: PDB Molecule:beclin 1; PDBTitle: structure of the bcl-xl:beclin 1 complex 83 c1u9pA_ not modelled 8.6 28 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 84 c3pbiA_ not modelled 8.5 20 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 85 d1fl0a_ not modelled 8.5 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Myf domain 86 d1yr0a1 not modelled 8.3 25 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 87 c1vkjA_ not modelled 8.2 29 PDB header:transferase Chain: A: PDB Molecule:heparan sulfate (glucosamine) 3-o- PDBTitle: crystal structure of heparan sulfate 3-o-sulfotransferase2 isoform 1 in the presence of pap 88 d1vkja_ not modelled 8.2 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 89 c2hjnA_ not modelled 8.2 17 PDB header:cell cycle Chain: A: PDB Molecule:maintenance of ploidy protein mob1; PDBTitle: structural and functional analysis of saccharomyces2 cerevisiae mob1 90 d2cq2a1 not modelled 8.1 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 91 d1wexa_ not modelled 8.1 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 92 d2ad9a1 not modelled 8.0 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 93 d1if1a_ not modelled 8.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Interferon regulatory factor 94 d1qgpa_ not modelled 7.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 95 d2cpda1 not modelled 7.8 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 96 c3k44D_ not modelled 7.7 24 PDB header:nucleic acid binding protein Chain: D: PDB Molecule:purine-rich binding protein-alpha, isoform b; PDBTitle: crystal structure of drosophila melanogaster pur-alpha 97 c3g16A_ not modelled 7.7 56 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein with cystatin-like fold; PDBTitle: crystal structure of protein of unknown function with cystatin-like2 fold (yp_001022489.1) from methylobium petroleophilum pm1 at 1.45 a3 resolution 98 c3d3qB_ not modelled 7.4 13 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 99 d1kw3b1 not modelled 7.4 25 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0