PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vkjA_

Fold library id	PDB Header	Molecule	Title
c1vkjA_	PDB header: transferase	Chain: A: PDB Molecule: heparan sulfate (glucosamine) 3-o-	PDBTitle: crystal structure of heparan sulfate 3-o-sulfotransferase2 isoform 1 in the presence of pap

Links to external resources
Added to library: Tue Mar 16 13:05:13 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S T Q Q L P Q T I I I G V R K G G T R A L L E M L S L H P D V A A A E N E V H F F D W E E H Y S Q G L G W Y L T Q M P F S S P H Q L T V E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S T S T T
S S
S S
T T
T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T P A Y F T S P K V P E R I H S M N P T I R L L L I L R D P S E R V L S D Y T Q V L Y N H L Q K H K P Y P P I E D L L M R D G R L N L D Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T
T T
T T
T T T
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L N R S L Y H A H M L N W L R F F P L G H I H I V D G D R L I R D P F P E I Q K V E R F L K L S P Q I N A S N F Y F N K T K G F Y C L R D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
G G G
T
G G G T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence S G K D R C L H E S K G R A H P Q V D P K L L D K L H E Y F H E P N K K F F K L V G R T F D W H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	T	Q	Q	L	P	Q	T	I	I	I	G	V	R	K	G	G	T	R	A	L	L	E	M	L	S	L	H	P	D	V	A	A	A	E	N	E	V	H	F	F	D	W	E	E	H	Y	S	Q	G	L	G	W	Y	L	T	Q	M	P	F	S	S	P	H	Q	L	T	V	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S							T	T	S	S										T	S	T	T					S	S					S	S						T	T								T	S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	P	A	Y	F	T	S	P	K	V	P	E	R	I	H	S	M	N	P	T	I	R	L	L	L	I	L	R	D	P	S	E	R	V	L	S	D	Y	T	Q	V	L	Y	N	H	L	Q	K	H	K	P	Y	P	P	I	E	D	L	L	M	R	D	G	R	L	N	L	D	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	T	T		T	T										T	T																											T	T	T													T	T				T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	N	R	S	L	Y	H	A	H	M	L	N	W	L	R	F	F	P	L	G	H	I	H	I	V	D	G	D	R	L	I	R	D	P	F	P	E	I	Q	K	V	E	R	F	L	K	L	S	P	Q	I	N	A	S	N	F	Y	F	N	K	T	K	G	F	Y	C	L	R	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T											T	T	S		G	G	G																									T							G	G	G					T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	S	G	K	D	R	C	L	H	E	S	K	G	R	A	H	P	Q	V	D	P	K	L	L	D	K	L	H	E	Y	F	H	E	P	N	K	K	F	F	K	L	V	G	R	T	F	D	W	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T							T	T	S	S																														T