Email l.a.kelley@imperial.ac.uk Description P24252 Date Thu Jan 5 11:41:38 GMT 2012 Unique Job ID 3cf961a35e698ee9

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ld7B_ 61.6 5 PDB header:transcription Chain: B: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of the msin3a pah3-sap30 sid complex 2 c2khqA_ 34.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b 3 d1gxya_ 31.7 10 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:Ecto-ART 4 d1puja_ 31.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 5 c3lysC_ 30.8 7 PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f 6 c3nkzD_ 20.6 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:flagellar protein flit; PDBTitle: the crystal structure of a flagella protein from yersinia2 enterocolitica subsp. enterocolitica 8081 7 c2oxoA_ 17.8 8 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase 8 c3zv0A_ 16.8 9 PDB header:cell cycle Chain: A: PDB Molecule:protein shq1; PDBTitle: structure of the shq1p-cbf5p complex 9 c2dl1A_ 16.7 17 PDB header:protein transport Chain: A: PDB Molecule:spartin; PDBTitle: solution structure of the mit domain from human spartin 10 c2rmrA_ 16.5 12 PDB header:transcription Chain: A: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of msin3a pah1 domain 11 c2x2iB_ 14.1 15 PDB header:lyase Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1; PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose 12 c4a1eF_ 13.6 25 PDB header:ribosome Chain: F: PDB Molecule:rpl7a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 13 c2v4xA_ 13.6 12 PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain 14 d1r0va1 12.1 14 Fold:Restriction endonuclease-like Superfamily:tRNA-intron endonuclease catalytic domain-like Family:tRNA-intron endonuclease catalytic domain-like 15 c3cnlA_ 12.0 5 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima 16 c2kgfA_ 11.7 15 PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus 17 d1sd4a_ 11.4 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 18 d1t11a2 11.3 9 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 19 d1in4a1 10.9 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 20 d1p9ya_ 10.5 16 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 21 c2aaoA_ not modelled 10.2 13 PDB header:transferase Chain: A: PDB Molecule:calcium-dependent protein kinase, isoform ak1; PDBTitle: regulatory apparatus of calcium dependent protein kinase from2 arabidopsis thaliana 22 c2kbrA_ not modelled 10.0 12 PDB header:structural protein/cell adhesion Chain: A: PDB Molecule:harmonin; PDBTitle: solution structure of harmonin n terminal domain in complex2 with a internal peptide of cadherin23 23 c3cprB_ not modelled 9.6 16 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 24 d2vbua1 not modelled 9.5 36 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 25 d1t07a_ not modelled 9.4 9 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 26 d1gkza1 not modelled 9.2 13 Fold:Bromodomain-like Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain 27 d1p7da_ not modelled 9.2 5 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 28 d1tlha_ not modelled 9.1 9 Fold:Anti-sigma factor AsiA Superfamily:Anti-sigma factor AsiA Family:Anti-sigma factor AsiA 29 d1nrva_ not modelled 9.1 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 30 c2c0kB_ not modelled 9.1 8 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin; PDBTitle: the structure of hemoglobin from the botfly gasterophilus2 intestinalis 31 c2dlyA_ not modelled 9.0 14 PDB header:transferase Chain: A: PDB Molecule:fyn-related kinase; PDBTitle: solution structure of the sh2 domain of murine fyn-related2 kinase 32 d1xs8a_ not modelled 9.0 36 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 33 c2ekxA_ not modelled 8.7 21 PDB header:signaling protein Chain: A: PDB Molecule:cytoplasmic tyrosine-protein kinase bmx; PDBTitle: solution structure of the human bmx sh2 domain 34 d1lkka_ not modelled 8.6 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 35 d1ixrc1 not modelled 8.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 36 c1w2wA_ not modelled 8.4 15 PDB header:isomerase Chain: A: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 37 c3fkkA_ not modelled 8.3 27 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 38 c2rhfA_ not modelled 8.0 14 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 39 c2kouA_ not modelled 8.0 14 PDB header:hydrolase Chain: A: PDB Molecule:dicer-like protein 4; PDBTitle: dicer like protein 40 c3knyA_ not modelled 7.9 11 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein bt_3535; PDBTitle: crystal structure of a two domain protein with unknown function2 (bt_3535) from bacteroides thetaiotaomicron vpi-5482 at 2.60 a3 resolution 41 c3lphD_ not modelled 7.9 17 PDB header:viral protein Chain: D: PDB Molecule:protein rev; PDBTitle: crystal structure of the hiv-1 rev dimer 42 d1g83a2 not modelled 7.6 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 43 c3a7mA_ not modelled 7.6 17 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid 44 c2x7lP_ not modelled 7.6 16 PDB header:immune system Chain: P: PDB Molecule:hiv rev; PDBTitle: implications of the hiv-1 rev dimer structure at 3.2a2 resolution for multimeric binding to the rev response3 element 45 d1mila_ not modelled 7.6 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 46 d1jwoa_ not modelled 7.6 14 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 47 c3gxxB_ not modelled 7.5 11 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 48 d1s5qb_ not modelled 7.4 12 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 49 d1pica_ not modelled 7.3 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 50 d1em9a_ not modelled 7.3 11 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 51 d2v9va2 not modelled 7.2 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 52 d1w53a_ not modelled 7.2 16 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Phosphoserine phosphatase RsbU, N-terminal domain 53 c2gsbA_ not modelled 7.2 14 PDB header:signaling protein Chain: A: PDB Molecule:ras gtpase-activating protein 1; PDBTitle: solution structure of the second sh2 domain of human ras2 gtpase-activating protein 1 54 c2dcrA_ not modelled 7.1 14 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fes/fps; PDBTitle: fully automated solution structure determination of the fes2 sh2 domain 55 d1f54a_ not modelled 7.1 4 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 56 d1blja_ not modelled 7.0 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 57 c2vhdB_ not modelled 6.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form 58 d1wz3a1 not modelled 6.9 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:APG12-like 59 d1d4ta_ not modelled 6.8 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 60 d1d1da2 not modelled 6.8 11 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 61 c2yqsA_ not modelled 6.8 9 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 62 c2fa5B_ not modelled 6.8 20 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator marr/emrr family; PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris 63 d2qfka1 not modelled 6.7 12 Fold:Globin-like Superfamily:Globin-like Family:Globins 64 d2f05a1 not modelled 6.7 6 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 65 d1ayaa_ not modelled 6.6 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 66 c3pm8B_ not modelled 6.6 18 PDB header:transferase Chain: B: PDB Molecule:calcium-dependent protein kinase 2; PDBTitle: cad domain of pff0520w, calcium dependent protein kinase 67 c3a5dG_ not modelled 6.6 17 PDB header:hydrolase Chain: G: PDB Molecule:v-type atp synthase subunit d; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase 68 c3oxpA_ not modelled 6.6 14 PDB header:transferase Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component; PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution 69 c3oxpB_ not modelled 6.6 14 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component; PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution 70 d1g4yb_ not modelled 6.6 19 Fold:Small-conductance potassium channel Superfamily:Small-conductance potassium channel Family:Small-conductance potassium channel 71 d1t5oa_ not modelled 6.5 7 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 72 c2lctA_ not modelled 6.5 12 PDB header:signaling protein Chain: A: PDB Molecule:proto-oncogene vav; PDBTitle: solution structure of the vav1 sh2 domain complexed with a syk-derived2 doubly phosphorylated peptide 73 d1cnt1_ not modelled 6.5 21 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines 74 c3n4dF_ not modelled 6.4 26 PDB header:hydrolase Chain: F: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of cg10062 inactivated by(r)-oxirane-2-carboxylate 75 c2kj8A_ not modelled 6.4 9 PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2 76 d1rjaa_ not modelled 6.3 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 77 d1opka2 not modelled 6.3 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 78 d1a81e2 not modelled 6.2 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 79 c2ee7A_ not modelled 6.2 19 PDB header:structural protein Chain: A: PDB Molecule:sperm flagellar protein 1; PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1 80 d2c9wa2 not modelled 6.2 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 81 d2qmsa1 not modelled 6.1 14 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 82 c3g0sA_ not modelled 6.1 15 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2 83 d2fcia1 not modelled 6.1 17 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 84 c3noeA_ not modelled 6.1 23 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 85 d1nu9c1 not modelled 6.0 35 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Staphylocoagulase Family:Staphylocoagulase 86 c3kuqA_ not modelled 6.0 17 PDB header:hydrolase activator Chain: A: PDB Molecule:rho gtpase-activating protein 7; PDBTitle: crystal structure of the dlc1 rhogap domain 87 d2oq1a2 not modelled 5.8 21 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 88 d2shpa3 not modelled 5.8 7 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 89 c2dm0A_ not modelled 5.8 23 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase txk; PDBTitle: solution structure of the sh2 domain of human tyrosine-2 protein kinase txk 90 c3lmdA_ not modelled 5.7 8 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum atcc 13032 91 d1zbdb_ not modelled 5.7 12 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 92 d1xxxa1 not modelled 5.7 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 93 c3eb2A_ not modelled 5.7 12 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution 94 c3pueA_ not modelled 5.7 19 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 95 d1sfka_ not modelled 5.6 22 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 96 c2r8wB_ not modelled 5.6 23 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 97 c2xzmE_ not modelled 5.6 32 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 98 d2fug11 not modelled 5.5 7 Fold:Bromodomain-like Superfamily:Nqo1C-terminal domain-like Family:Nqo1C-terminal domain-like 99 d1rhzb_ not modelled 5.5 18 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit