Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	W	F	K	N	L	M	V	Y	R	L	S	R	E	I	S	L	R	A	E	E	M	E	K	Q	L	A	S	M	A	F	T	P	C	G	S	Q	D	M	A	K	M	G	W	V	P	P	M	G	S	H	S	D	A	L	T	H	V	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?																												?		?		?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	G	Q	I	V	I	C	A	R	K	E	E	K	I	L	P	S	P	V	I	K	Q	A	L	E	A	K	I	A	K	L	E	A	E	Q	A	R	K	L	K	K	T	E	K	D	S	L	K	D	E	V	L	H	S	L	L	P	R	A	F
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?																				?	?	?	?	?	?																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	R	F	S	Q	T	M	M	W	I	D	T	V	N	G	L	I	M	V	D	C	A	S	A	K	K	A	E	D	T	L	A	L	L	R	K	S	L	G	S	L	P	V	V	P	L	S	M	E	N	P	I	E	L	T	L	T	E	W	V
Secondary structure
SS confidence
Disorder																																														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	S	G	S	A	A	Q	G	F	Q	L	L	D	E	A	E	L	K	S	L	L	E	D	G	G	V	I	R	A	K	K	Q	D	L	T	S	E	E	I	T	N	H	I	E	A	G	K	V	V	T	K	L	A	L	D	W	Q	Q	R	I
Secondary structure
SS confidence
Disorder						?		?		?									?	?	?	?											?			?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	F	V	M	C	D	D	G	S	L	K	R	L	K	F	C	D	E	L	R	D	Q	N	E	D	I	D	R	E	D	F	A	Q	R	F	D	A	D	F	I	L	M	T	G	E	L	A	A	L	I	Q	N	L	I	E	G	L	G	G	E
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?	?	?	?																													?	?
Disorder confidence
		.	.	.
Sequence		A	Q	R
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2owl chain A Region: 1 - 302 Aligned: 302 Modelled: 301 Confidence: 100.0% Identity: 96% PDB header:recombination Chain: A: PDB Molecule:recombination-associated protein rdgc; PDBTitle: crystal structure of e. coli rdgc Phyre2 PDB 2owy chain B Region: 2 - 302 Aligned: 301 Modelled: 301 Confidence: 100.0% Identity: 49% PDB header:dna binding protein Chain: B: PDB Molecule:recombination-associated protein rdgc; PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding Phyre2 PDB 2cfu chain A domain 2 Region: 128 - 166 Aligned: 39 Modelled: 39 Confidence: 89.8% Identity: 26% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Alkylsulfatase-like Phyre2 PDB 2cfu chain A Region: 128 - 166 Aligned: 39 Modelled: 39 Confidence: 86.2% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. Phyre2 PDB 2kmu chain A Region: 78 - 113 Aligned: 36 Modelled: 36 Confidence: 63.1% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase q4; PDBTitle: recql4 amino-terminal domain Phyre2 PDB 1vme chain A domain 2 Region: 129 - 163 Aligned: 35 Modelled: 35 Confidence: 31.3% Identity: 11% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: ROO N-terminal domain-like Phyre2 PDB 2l09 chain A Region: 73 - 111 Aligned: 38 Modelled: 39 Confidence: 27.5% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 Phyre2 PDB 2kru chain A Region: 73 - 110 Aligned: 37 Modelled: 38 Confidence: 27.4% Identity: 8% PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) Phyre2 PDB 1yd2 chain A Region: 107 - 143 Aligned: 34 Modelled: 37 Confidence: 26.0% Identity: 9% PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation Phyre2 PDB 1asu chain A Region: 117 - 158 Aligned: 42 Modelled: 42 Confidence: 21.7% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Retroviral integrase, catalytic domain Phyre2 PDB 3nf9 chain A Region: 124 - 175 Aligned: 52 Modelled: 52 Confidence: 21.1% Identity: 21% PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design Phyre2 PDB 1ztc chain A domain 1 Region: 116 - 156 Aligned: 41 Modelled: 41 Confidence: 19.2% Identity: 10% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: TM0894-like Phyre2 PDB 2ohi chain B Region: 129 - 167 Aligned: 39 Modelled: 39 Confidence: 17.7% Identity: 10% PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state Phyre2 PDB 1c6v chain A Region: 122 - 174 Aligned: 53 Modelled: 53 Confidence: 17.5% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Retroviral integrase, catalytic domain Phyre2 PDB 3hle chain A Region: 126 - 158 Aligned: 33 Modelled: 33 Confidence: 15.2% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:transesterase; PDBTitle: simvastatin synthase (lovd), from aspergillus terreus, s5 mutant, s76a2 mutant, complex with monacolin j acid Phyre2 PDB 1v1c chain A Region: 41 - 48 Aligned: 8 Modelled: 8 Confidence: 14.4% Identity: 50% PDB header:sh3-domain Chain: A: PDB Molecule:obscurin; PDBTitle: solution structure of the sh3 domain of obscurin Phyre2 PDB 3spu chain B Region: 120 - 159 Aligned: 40 Modelled: 40 Confidence: 13.6% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure Phyre2 PDB 2aio chain A domain 1 Region: 128 - 156 Aligned: 29 Modelled: 29 Confidence: 13.4% Identity: 17% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Zn metallo-beta-lactamase Phyre2 PDB 2gmn chain A domain 1 Region: 129 - 156 Aligned: 28 Modelled: 28 Confidence: 13.3% Identity: 29% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Zn metallo-beta-lactamase Phyre2 PDB 1yd6 chain A Region: 118 - 143 Aligned: 26 Modelled: 26 Confidence: 13.1% Identity: 15% PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax Phyre2 1 c2owlA_ 2 c2owyB_ 3 d2cfua2 4 c2cfuA_ 5 c2kmuA_ 6 d1vmea2 7 c2l09A_ 8 c2kruA_ 9 c1yd2A_ 10 d1asua_ 11 c3nf9A_ 12 d1ztca1 13 c2ohiB_ 14 d1c6va_ 15 c3hleA_ 16 c1v1cA_ 17 c3spuB_ 18 d2aioa1 19 d2gmna1 20 c1yd6A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2owlA_ 100.0 96 PDB header:recombination Chain: A: PDB Molecule:recombination-associated protein rdgc; PDBTitle: crystal structure of e. coli rdgc 2 c2owyB_ 100.0 49 PDB header:dna binding protein Chain: B: PDB Molecule:recombination-associated protein rdgc; PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding 3 d2cfua2 89.8 26 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 4 c2cfuA_ 86.2 26 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 5 c2kmuA_ 63.1 11 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase q4; PDBTitle: recql4 amino-terminal domain 6 d1vmea2 31.3 11 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 7 c2l09A_ 27.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 8 c2kruA_ 27.4 8 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) 9 c1yd2A_ 26.0 9 PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation 10 d1asua_ 21.7 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 11 c3nf9A_ 21.1 21 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design 12 d1ztca1 19.2 10 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:TM0894-like 13 c2ohiB_ 17.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 14 d1c6va_ 17.5 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 15 c3hleA_ 15.2 15 PDB header:transferase Chain: A: PDB Molecule:transesterase; PDBTitle: simvastatin synthase (lovd), from aspergillus terreus, s5 mutant, s76a2 mutant, complex with monacolin j acid 16 c1v1cA_ 14.4 50 PDB header:sh3-domain Chain: A: PDB Molecule:obscurin; PDBTitle: solution structure of the sh3 domain of obscurin 17 c3spuB_ 13.6 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure 18 d2aioa1 13.4 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 19 d2gmna1 13.3 29 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 20 c1yd6A_ 13.1 15 PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax 21 d1hyva_ not modelled 13.1 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 22 d1cxqa_ not modelled 13.0 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 23 c2yz3B_ not modelled 11.8 30 PDB header:hydrolase Chain: B: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor 24 d1ycga2 not modelled 11.0 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 25 d1e5da2 not modelled 10.9 8 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 26 d1p5zb_ not modelled 10.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 27 c3au5B_ not modelled 10.6 14 PDB header:motor protein Chain: B: PDB Molecule:myosin-x; PDBTitle: structure of the human myosin-x myth4-ferm cassette 28 c1vmeB_ not modelled 10.5 9 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 29 c2q9uB_ not modelled 10.5 10 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 30 c3lw8G_ not modelled 10.1 28 PDB header:signaling protein/rhoa-binding protein Chain: G: PDB Molecule:ipgb2; PDBTitle: shigella ipgb2 in complex with human rhoa, gdp and mg2+ (complex a) 31 d2cowa1 not modelled 10.1 10 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 32 c3ewgA_ not modelled 9.8 13 PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii 33 c1c0mA_ not modelled 9.8 13 PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase 34 d1whma_ not modelled 9.8 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 35 d1rw2a_ not modelled 9.6 11 Fold:alpha-alpha superhelix Superfamily:C-terminal domain of Ku80 Family:C-terminal domain of Ku80 36 c2d3o1_ not modelled 9.4 24 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 37 d1ixda_ not modelled 9.0 33 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 38 c2b7fD_ not modelled 8.8 24 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:htlv protease; PDBTitle: crystal structure of human t-cell leukemia virus protease, a novel2 target for anti-cancer design 39 c1ychD_ not modelled 8.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 40 c3s6eB_ not modelled 8.5 18 PDB header:rna binding protein Chain: B: PDB Molecule:rna-binding protein 39; PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution 41 d1x8ha_ not modelled 8.4 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 42 d1knwa2 not modelled 8.4 10 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 43 c3f9uA_ not modelled 8.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 44 c2ja9A_ not modelled 8.1 20 PDB header:rna-binding protein Chain: A: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40 45 c3lvzA_ not modelled 8.1 29 PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum 46 d2eyqa2 not modelled 7.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 47 d1tova_ not modelled 7.8 13 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 48 d1ul7a_ not modelled 7.8 25 Fold:TBP-like Superfamily:KA1-like Family:Kinase associated domain 1, KA1 49 c1bw8A_ not modelled 7.7 23 PDB header:peptide binding protein Chain: A: PDB Molecule:protein (mu2 adaptin subunit); PDBTitle: mu2 adaptin subunit (ap50) of ap2 adaptor (second domain),2 complexed with egfr internalization peptide fyralm 50 c3sd9B_ not modelled 7.5 21 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases 51 d1y88a1 not modelled 7.4 44 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:Hypothetical protein AF1548, C-terminal domain 52 c2joiA_ not modelled 7.2 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0095; PDBTitle: nmr solution structure of hypothetical protein ta0095 from2 thermoplasma acidophilum 53 d2cp2a1 not modelled 7.2 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 c1w26B_ not modelled 7.1 17 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 55 d1tp6a_ not modelled 7.1 19 Fold:Cystatin-like Superfamily:NTF2-like Family:PA1314-like 56 d1exqa_ not modelled 7.0 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 57 d1mk0a_ not modelled 6.7 25 Fold:GIY-YIG endonuclease Superfamily:GIY-YIG endonuclease Family:GIY-YIG endonuclease 58 d1xs8a_ not modelled 6.7 18 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 59 c3p8bB_ not modelled 6.6 15 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 60 c1ex4A_ not modelled 6.5 21 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain 61 c1tf2A_ not modelled 6.4 20 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis 62 c2qdoC_ not modelled 6.4 54 PDB header:photosynthesis Chain: C: PDB Molecule:nbla protein; PDBTitle: nbla protein from t. vulcanus 63 d2cp5a1 not modelled 6.3 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 64 d1whja_ not modelled 6.2 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 65 c2bh8B_ not modelled 6.1 20 PDB header:transcription Chain: B: PDB Molecule:1b11; PDBTitle: combinatorial protein 1b11 66 c1k8wA_ not modelled 6.1 12 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 67 c3rkjA_ not modelled 6.0 13 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase ndm-1; PDBTitle: crystal structure of new delhi metallo-beta-lactamase-1 from2 klebsiella pnueumoniae 68 d1t11a2 not modelled 5.8 28 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 69 d1znba_ not modelled 5.6 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 70 d2q0ia1 not modelled 5.5 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:PqsE-like 71 c2nn6G_ not modelled 5.5 20 PDB header:hydrolase/transferase Chain: G: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 72 c3camB_ not modelled 5.4 25 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 73 c1vsqC_ not modelled 5.3 23 PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system 74 d2nn6g3 not modelled 5.2 21 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 75 c3nadB_ not modelled 5.2 36 PDB header:lyase Chain: B: PDB Molecule:ferulate decarboxylase; PDBTitle: crystal structure of phenolic acid decarboxylase from bacillus pumilus2 ui-670 76 c1yf2A_ not modelled 5.2 16 PDB header:hydrolase regulator Chain: A: PDB Molecule:type i restriction-modification enzyme, s subunit; PDBTitle: three-dimensional structure of dna sequence specificity (s) subunit of2 a type i restriction-modification enzyme and its functional3 implications

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0