PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2nn6G_

Fold library id	PDB Header	Molecule	Title
c2nn6G_	PDB header: hydrolase/transferase	Chain: G: PDB Molecule: exosome complex exonuclease rrp40;	PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40

Links to external resources
Added to library: Tue Mar 16 13:30:44 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A R A A R T V L G Q V V L P G E E L L L P E Q E D A E G P G G A V E R G D R L L V T K C G R L R H K E P G S G S G G G V Y W V D S Q Q K R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T G G G S S B
S S
S
S
S S
S
T T T S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V P V K G D H V I G I V T A K S G D I F K V D V G G S E P A S L S Y L S F E G A T K R N R P N V Q V G D L I Y G Q F V V A N K D M E P E M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S S S S
S
S S S
S S
S S S S S
T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C I D S C G R A N G M G V I G Q D G L L F K V T L G L I R K L L A P D C E I I Q E V G K L Y P L E I V F G M N G R I W V K A K T I Q Q T L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B T T T T B
S
S S
T T
S T T
S S S
T T T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . .

Sequence L A N I L E A C E H M T S D Q R K Q I F S R L A E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	R	A	A	R	T	V	L	G	Q	V	V	L	P	G	E	E	L	L	L	P	E	Q	E	D	A	E	G	P	G	G	A	V	E	R	G	D	R	L	L	V	T	K	C	G	R	L	R	H	K	E	P	G	S	G	S	G	G	G	V	Y	W	V	D	S	Q	Q	K	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B		T	G	G	G	S	S	B			S	S						S		S						S	S													S										T	T	T	S	S											S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	P	V	K	G	D	H	V	I	G	I	V	T	A	K	S	G	D	I	F	K	V	D	V	G	G	S	E	P	A	S	L	S	Y	L	S	F	E	G	A	T	K	R	N	R	P	N	V	Q	V	G	D	L	I	Y	G	Q	F	V	V	A	N	K	D	M	E	P	E	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S												T	T							S	S	S	S						S		S	S	S			S	S		S	S	S	S	S		T	T												T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	I	D	S	C	G	R	A	N	G	M	G	V	I	G	Q	D	G	L	L	F	K	V	T	L	G	L	I	R	K	L	L	A	P	D	C	E	I	I	Q	E	V	G	K	L	Y	P	L	E	I	V	F	G	M	N	G	R	I	W	V	K	A	K	T	I	Q	Q	T	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	B	T	T	T	T	B					S			S	S																	T	T		S					T	T		S	S	S							T	T	T							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence	L	A	N	I	L	E	A	C	E	H	M	T	S	D	Q	R	K	Q	I	F	S	R	L	A	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S		T	T	T