Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	D	Y	Q	M	F	E	V	Q	V	S	Q	V	E	P	L	T	E	Q	V	K	R	F	T	L	V	A	T	D	G	K	P	L	P	A	F	T	G	G	S	H	V	I	V	Q	M	S	D	G	D	N	Q	Y	S	N	A	Y	S	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	S	S	P	H	D	T	S	C	Y	Q	I	A	V	R	L	E	E	N	S	R	G	G	S	R	F	L	H	Q	Q	V	K	V	G	D	R	L	T	I	S	T	P	N	N	L	F	A	L	I	P	S	A	R	K	H	L	F	I	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	I	G	I	T	P	F	L	S	H	M	A	E	L	Q	H	S	D	V	D	W	Q	L	H	Y	C	S	R	N	P	E	S	C	A	F	R	D	E	L	V	Q	H	P	Q	A	E	K	V	H	L	H	H	S	S	T	G	T	R	L	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	A	R	L	L	A	D	I	E	P	G	T	H	V	Y	T	C	G	P	E	A	L	I	E	A	V	R	S	E	A	A	R	L	D	I	A	A	D	T	L	H	F	E	Q	F	A	I	E	D	K	T	G	D	A	F	T	L	V	L	A
Secondary structure
SS confidence
Disorder																																																			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	S	G	K	E	F	V	V	P	E	E	M	T	I	L	Q	V	I	E	N	N	K	A	A	K	V	E	C	L	C	R	E	G	V	C	G	T	C	E	T	A	I	L	E	G	E	A	D	H	R	D	Q	Y	F	S	D	E	E	R	A
Secondary structure
SS confidence
Disorder																																																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Sequence		S	Q	Q	S	M	L	I	C	C	S	R	A	K	G	K	R	L	V	L	D	L
Secondary structure
SS confidence
Disorder																						?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pia chain A Region: 1 - 321 Aligned: 313 Modelled: 321 Confidence: 100.0% Identity: 34% PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] Phyre2 PDB 1gvh chain A Region: 2 - 230 Aligned: 227 Modelled: 229 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket Phyre2 PDB 1krh chain A Region: 1 - 228 Aligned: 224 Modelled: 228 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase Phyre2 PDB 1ep3 chain B Region: 6 - 290 Aligned: 238 Modelled: 243 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. Phyre2 PDB 1cqx chain B Region: 3 - 228 Aligned: 225 Modelled: 226 Confidence: 100.0% Identity: 23% PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution Phyre2 PDB 2r6h chain C Region: 3 - 226 Aligned: 222 Modelled: 224 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis Phyre2 PDB 2eix chain A Region: 1 - 222 Aligned: 221 Modelled: 222 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase Phyre2 PDB 1umk chain A Region: 2 - 222 Aligned: 220 Modelled: 221 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase Phyre2 PDB 1tvc chain A Region: 3 - 230 Aligned: 225 Modelled: 228 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) Phyre2 PDB 3fpk chain B Region: 4 - 225 Aligned: 215 Modelled: 221 Confidence: 100.0% Identity: 17% PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium Phyre2 PDB 2ok8 chain D Region: 7 - 225 Aligned: 214 Modelled: 218 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: D: PDB Molecule:putative ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum Phyre2 PDB 1a8p chain A Region: 4 - 225 Aligned: 216 Modelled: 222 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii Phyre2 PDB 1fnc chain A Region: 4 - 225 Aligned: 218 Modelled: 222 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase (nadp+(a),ferredoxin(a)) Chain: A: PDB Molecule:ferredoxin-nadp+ reductase; PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states Phyre2 PDB 1qgy chain A Region: 4 - 225 Aligned: 219 Modelled: 222 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp+ reductase; PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e) Phyre2 PDB 1qfj chain D Region: 6 - 226 Aligned: 209 Modelled: 221 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: D: PDB Molecule:protein (flavin reductase); PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli Phyre2 PDB 2bgj chain B Region: 8 - 227 Aligned: 215 Modelled: 219 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms Phyre2 PDB 1cne chain A Region: 7 - 223 Aligned: 217 Modelled: 217 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase; PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain Phyre2 PDB 2b5o chain A Region: 1 - 221 Aligned: 219 Modelled: 221 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp reductase Phyre2 PDB 1jb9 chain A Region: 7 - 223 Aligned: 213 Modelled: 217 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms Phyre2 PDB 2rc5 chain D Region: 2 - 225 Aligned: 221 Modelled: 224 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: D: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: refined structure of fnr from leptospira interrogans Phyre2 1 c2piaA_ 2 c1gvhA_ 3 c1krhA_ 4 c1ep3B_ 5 c1cqxB_ 6 c2r6hC_ 7 c2eixA_ 8 c1umkA_ 9 c1tvcA_ 10 c3fpkB_ 11 c2ok8D_ 12 c1a8pA_ 13 c1fncA_ 14 c1qgyA_ 15 c1qfjD_ 16 c2bgjB_ 17 c1cneA_ 18 c2b5oA_ 19 c1jb9A_ 20 c2rc5D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2piaA_ 100.0 34 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 2 c1gvhA_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket 3 c1krhA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 4 c1ep3B_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 5 c1cqxB_ 100.0 23 PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution 6 c2r6hC_ 100.0 20 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis 7 c2eixA_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase 8 c1umkA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase 9 c1tvcA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) 10 c3fpkB_ 100.0 17 PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium 11 c2ok8D_ 100.0 19 PDB header:oxidoreductase Chain: D: PDB Molecule:putative ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum 12 c1a8pA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii 13 c1fncA_ 100.0 18 PDB header:oxidoreductase (nadp+(a),ferredoxin(a)) Chain: A: PDB Molecule:ferredoxin-nadp+ reductase; PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states 14 c1qgyA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp+ reductase; PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e) 15 c1qfjD_ 100.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:protein (flavin reductase); PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli 16 c2bgjB_ 100.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms 17 c1cneA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase; PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain 18 c2b5oA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp reductase 19 c1jb9A_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms 20 c2rc5D_ 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: refined structure of fnr from leptospira interrogans 21 c2gpjA_ not modelled 100.0 11 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 22 c1ddiA_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha- PDBTitle: crystal structure of sir-fp60 23 c1tllA_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 24 c1j9zB_ not modelled 99.9 24 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 25 d1ep3b2 not modelled 99.9 24 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit 26 c1f20A_ not modelled 99.9 22 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution. 27 d2piaa2 not modelled 99.9 37 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 28 c3qftA_ not modelled 99.9 22 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph--cytochrome p450 reductase; PDBTitle: crystal structure of nadph-cytochrome p450 reductase (fad/nadph domain2 and r457h mutant) 29 d1gvha3 not modelled 99.9 21 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 30 d1tvca2 not modelled 99.9 22 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 31 d1qfja2 not modelled 99.9 16 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 32 c2qtzA_ not modelled 99.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine synthase reductase; PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase 33 d1krha2 not modelled 99.9 26 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 34 d1cqxa3 not modelled 99.9 20 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 35 c2bpoA_ not modelled 99.9 23 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 36 d1umka2 not modelled 99.9 24 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 37 d2piaa3 not modelled 99.9 41 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 38 d2cnda2 not modelled 99.9 23 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 39 d1qx4a2 not modelled 99.9 21 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 40 d1a8pa2 not modelled 99.8 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 41 c3a1fA_ not modelled 99.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome b-245 heavy chain; PDBTitle: the crystal structure of nadph binding domain of gp91(phox) 42 d1a70a_ not modelled 99.8 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 43 c3lrxC_ not modelled 99.8 14 PDB header:oxidoreductase Chain: C: PDB Molecule:putative hydrogenase; PDBTitle: crystal structure of the c-terminal domain (residues 78-226)2 of pf1911 hydrogenase from pyrococcus furiosus, northeast3 structural genomics consortium target pfr246a 44 d1doia_ not modelled 99.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 45 d2piaa1 not modelled 99.8 28 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 46 d1offa_ not modelled 99.8 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 47 d1fdra2 not modelled 99.8 15 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 48 d1iuea_ not modelled 99.8 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 49 d1awda_ not modelled 99.8 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 50 d1frra_ not modelled 99.8 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 51 d1gvha2 not modelled 99.8 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 52 d1fxia_ not modelled 99.8 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 53 d1ndha2 not modelled 99.8 23 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 54 d2bmwa2 not modelled 99.8 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 55 d1qfza2 not modelled 99.8 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 56 d1f20a2 not modelled 99.8 21 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 57 d1frda_ not modelled 99.8 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 58 d1cqxa2 not modelled 99.8 26 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 59 d1pfda_ not modelled 99.8 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 60 d1e0za_ not modelled 99.8 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 61 d1qx4a1 not modelled 99.8 18 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 62 d1wria_ not modelled 99.8 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 63 d1czpa_ not modelled 99.8 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 64 d1gawa2 not modelled 99.8 19 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 65 d1krha1 not modelled 99.8 27 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 66 d2cjoa_ not modelled 99.8 31 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 67 d1fnda2 not modelled 99.8 16 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 68 d1jb9a2 not modelled 99.8 19 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 69 d1ddga2 not modelled 99.8 20 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 70 d2cnda1 not modelled 99.7 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 71 d1umka1 not modelled 99.7 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 72 d1fdra1 not modelled 99.7 22 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 73 d1gaqb_ not modelled 99.7 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 74 d1a8pa1 not modelled 99.7 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 75 d1sm4a2 not modelled 99.7 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 76 d4fxca_ not modelled 99.7 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 77 d1ndha1 not modelled 99.7 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 78 d2bmwa1 not modelled 99.7 27 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 79 d1ja1a3 not modelled 99.7 22 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 80 d1tvca1 not modelled 99.7 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 81 d1ep3b1 not modelled 99.7 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 82 d1sm4a1 not modelled 99.7 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 83 d1jq4a_ not modelled 99.6 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 84 d1qfja1 not modelled 99.6 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 85 d1krha3 not modelled 99.6 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 86 d1gawa1 not modelled 99.6 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 87 d1fnda1 not modelled 99.6 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 88 d1qfza1 not modelled 99.6 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 89 d1jb9a1 not modelled 99.4 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 90 c3ah7A_ not modelled 99.4 20 PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 91 d1i7ha_ not modelled 99.4 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 92 d1l5pa_ not modelled 99.1 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 93 c2wlbB_ not modelled 99.0 15 PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria 94 c3huiA_ not modelled 99.0 18 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris 95 d1xlqa1 not modelled 98.9 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 96 c3lxfC_ not modelled 98.9 18 PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans 97 d1e9ma_ not modelled 98.9 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 98 d1b9ra_ not modelled 98.8 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 99 d2bt6a1 not modelled 98.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 100 d2fug33 not modelled 98.2 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 101 c1l6vA_ not modelled 97.9 15 PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; PDBTitle: structure of reduced bovine adrenodoxin 102 d1ddga1 not modelled 97.9 23 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:NADPH-cytochrome p450 reductase FAD-binding domain-like 103 d1t3qa2 not modelled 97.9 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 104 d1vlba2 not modelled 97.7 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 105 c1c4cA_ not modelled 97.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 106 d1ffva2 not modelled 97.7 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 107 d2bs2b2 not modelled 97.7 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 108 d1dgja2 not modelled 97.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 109 d3c8ya2 not modelled 97.6 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 110 c1t3qD_ not modelled 97.6 19 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 111 d1n62a2 not modelled 97.6 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 112 d1rm6c2 not modelled 97.4 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 113 c3hrdH_ not modelled 97.4 21 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 114 c1n60D_ not modelled 97.4 17 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 115 c1rm6F_ not modelled 97.4 26 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 116 d1kf6b2 not modelled 97.3 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 117 c1ffuA_ not modelled 97.3 16 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 118 c2h89B_ not modelled 96.9 19 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 119 c1vlbA_ not modelled 96.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 120 c2bs2E_ not modelled 96.8 28 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0