Phyre 2 Results for P76254

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Email | l.a.kelley@imperial.ac.uk
Description | P76254
Date | Thu Jan 5 12:21:16 GMT 2012
Unique Job ID | 398be6b23df119f0

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2piaA_
Top template information
PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
313 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | D | Y | Q | M | F | E | V | Q | V | S | Q | V | E | P | L | T | E | Q | V | K | R | F | T | L | V | A | T | D | G | K | P | L | P | A | F | T | G | G | S | H | V | I | V | Q | M | S | D | G | D | N | Q | Y | S | N | A | Y | S | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | S | S | P | H | D | T | S | C | Y | Q | I | A | V | R | L | E | E | N | S | R | G | G | S | R | F | L | H | Q | Q | V | K | V | G | D | R | L | T | I | S | T | P | N | N | L | F | A | L | I | P | S | A | R | K | H | L | F | I | A | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | I | G | I | T | P | F | L | S | H | M | A | E | L | Q | H | S | D | V | D | W | Q | L | H | Y | C | S | R | N | P | E | S | C | A | F | R | D | E | L | V | Q | H | P | Q | A | E | K | V | H | L | H | H | S | S | T | G | T | R | L | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | L | A | R | L | L | A | D | I | E | P | G | T | H | V | Y | T | C | G | P | E | A | L | I | E | A | V | R | S | E | A | A | R | L | D | I | A | A | D | T | L | H | F | E | Q | F | A | I | E | D | K | T | G | D | A | F | T | L | V | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | R | S | G | K | E | F | V | V | P | E | E | M | T | I | L | Q | V | I | E | N | N | K | A | A | K | V | E | C | L | C | R | E | G | V | C | G | T | C | E | T | A | I | L | E | G | E | A | D | H | R | D | Q | Y | F | S | D | E | E | R | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | .
Sequence |  | S | Q | Q | S | M | L | I | C | C | S | R | A | K | G | K | R | L | V | L | D | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2piaA_ |

### PDB 2pia chain A

Region: 1 - 321
Aligned: 313
Modelled: 321
Confidence: 100.0%
Identity: 34%
PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]

Phyre2
2 |
| c1gvhA_ |

### PDB 1gvh chain A

Region: 2 - 230
Aligned: 227
Modelled: 229
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoprotein;
PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket

Phyre2
3 |
| c1krhA_ |

### PDB 1krh chain A

Region: 1 - 228
Aligned: 224
Modelled: 228
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray stucture of benzoate dioxygenase reductase

Phyre2
4 |
| c1ep3B_ |

### PDB 1ep3 chain B

Region: 6 - 290
Aligned: 238
Modelled: 243
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.

Phyre2
5 |
| c1cqxB_ |

### PDB 1cqx chain B

Region: 3 - 228
Aligned: 225
Modelled: 226
Confidence: 100.0%
Identity: 23%
PDB header:lipid binding protein
Chain: B: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution

Phyre2
6 |
| c2r6hC_ |

### PDB 2r6h chain C

Region: 3 - 226
Aligned: 222
Modelled: 224
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f
PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis

Phyre2
7 |
| c2eixA_ |

### PDB 2eix chain A

Region: 1 - 222
Aligned: 221
Modelled: 222
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-cytochrome b5 reductase;
PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase

Phyre2
8 |
| c1umkA_ |

### PDB 1umk chain A

Region: 2 - 222
Aligned: 220
Modelled: 221
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-cytochrome b5 reductase;
PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase

Phyre2
9 |
| c1tvcA_ |

### PDB 1tvc chain A

Region: 3 - 230
Aligned: 225
Modelled: 228
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase component c;
PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath)

Phyre2
10 |
| c3fpkB_ |

### PDB 3fpk chain B

Region: 4 - 225
Aligned: 215
Modelled: 221
Confidence: 100.0%
Identity: 17%
PDB header:flavoprotein, oxidoreductase
Chain: B: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium

Phyre2
11 |
| c2ok8D_ |

### PDB 2ok8 chain D

Region: 7 - 225
Aligned: 214
Modelled: 218
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative ferredoxin--nadp reductase;
PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum

Phyre2
12 |
| c1a8pA_ |

### PDB 1a8p chain A

Region: 4 - 225
Aligned: 216
Modelled: 222
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase;
PDBTitle: ferredoxin reductase from azotobacter vinelandii

Phyre2
13 |
| c1fncA_ |

### PDB 1fnc chain A

Region: 4 - 225
Aligned: 218
Modelled: 222
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase (nadp+(a),ferredoxin(a))
Chain: A: PDB Molecule:ferredoxin-nadp+ reductase;
PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states

Phyre2
14 |
| c1qgyA_ |

### PDB 1qgy chain A

Region: 4 - 225
Aligned: 219
Modelled: 222
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp+ reductase;
PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e)

Phyre2
15 |
| c1qfjD_ |

### PDB 1qfj chain D

Region: 6 - 226
Aligned: 209
Modelled: 221
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: D: PDB Molecule:protein (flavin reductase);
PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli

Phyre2
16 |
| c2bgjB_ |

### PDB 2bgj chain B

Region: 8 - 227
Aligned: 215
Modelled: 219
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase;
PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms

Phyre2
17 |
| c1cneA_ |

### PDB 1cne chain A

Region: 7 - 223
Aligned: 217
Modelled: 217
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrate reductase;
PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain

Phyre2
18 |
| c2b5oA_ |

### PDB 2b5o chain A

Region: 1 - 221
Aligned: 219
Modelled: 221
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: ferredoxin-nadp reductase

Phyre2
19 |
| c1jb9A_ |

### PDB 1jb9 chain A

Region: 7 - 223
Aligned: 213
Modelled: 217
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms

Phyre2
20 |
| c2rc5D_ |

### PDB 2rc5 chain D

Region: 2 - 225
Aligned: 221
Modelled: 224
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: D: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: refined structure of fnr from leptospira interrogans

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2piaA_ |
|  | 100.0 | 34 | PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
2 | c1gvhA_ |
|  | 100.0 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket
3 | c1krhA_ |
|  | 100.0 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase
4 | c1ep3B_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
5 | c1cqxB_ |
|  | 100.0 | 23 | PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution
6 | c2r6hC_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis
7 | c2eixA_ |
|  | 100.0 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase
8 | c1umkA_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase
9 | c1tvcA_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath)
10 | c3fpkB_ |
|  | 100.0 | 17 | PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium
11 | c2ok8D_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: D: PDB Molecule:putative ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum
12 | c1a8pA_ |
|  | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii
13 | c1fncA_ |
|  | 100.0 | 18 | PDB header:oxidoreductase (nadp+(a),ferredoxin(a)) Chain: A: PDB Molecule:ferredoxin-nadp+ reductase; PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states
14 | c1qgyA_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp+ reductase; PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e)
15 | c1qfjD_ |
|  | 100.0 | 17 | PDB header:oxidoreductase Chain: D: PDB Molecule:protein (flavin reductase); PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli
16 | c2bgjB_ |
|  | 100.0 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms
17 | c1cneA_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase; PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain
18 | c2b5oA_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp reductase
19 | c1jb9A_ |
|  | 100.0 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms
20 | c2rc5D_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: D: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: refined structure of fnr from leptospira interrogans
21 | c2gpjA_ |
| not modelled | 100.0 | 11 | PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution
22 | c1ddiA_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha- PDBTitle: crystal structure of sir-fp60
23 | c1tllA_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
24 | c1j9zB_ |
| not modelled | 99.9 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g
25 | d1ep3b2 |
| not modelled | 99.9 | 24 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit
26 | c1f20A_ |
| not modelled | 99.9 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution.
27 | d2piaa2 |
| not modelled | 99.9 | 37 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like
28 | c3qftA_ |
| not modelled | 99.9 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadph--cytochrome p450 reductase; PDBTitle: crystal structure of nadph-cytochrome p450 reductase (fad/nadph domain2 and r457h mutant)
29 | d1gvha3 |
| not modelled | 99.9 | 21 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain
30 | d1tvca2 |
| not modelled | 99.9 | 22 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like
31 | d1qfja2 |
| not modelled | 99.9 | 16 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
32 | c2qtzA_ |
| not modelled | 99.9 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:methionine synthase reductase; PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase
33 | d1krha2 |
| not modelled | 99.9 | 26 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like
34 | d1cqxa3 |
| not modelled | 99.9 | 20 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain
35 | c2bpoA_ |
| not modelled | 99.9 | 23 | PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a.
36 | d1umka2 |
| not modelled | 99.9 | 24 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
37 | d2piaa3 |
| not modelled | 99.9 | 41 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
38 | d2cnda2 |
| not modelled | 99.9 | 23 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
39 | d1qx4a2 |
| not modelled | 99.9 | 21 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
40 | d1a8pa2 |
| not modelled | 99.8 | 17 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
41 | c3a1fA_ |
| not modelled | 99.8 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome b-245 heavy chain; PDBTitle: the crystal structure of nadph binding domain of gp91(phox)
42 | d1a70a_ |
| not modelled | 99.8 | 24 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
43 | c3lrxC_ |
| not modelled | 99.8 | 14 | PDB header:oxidoreductase Chain: C: PDB Molecule:putative hydrogenase; PDBTitle: crystal structure of the c-terminal domain (residues 78-226)2 of pf1911 hydrogenase from pyrococcus furiosus, northeast3 structural genomics consortium target pfr246a
44 | d1doia_ |
| not modelled | 99.8 | 20 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
45 | d2piaa1 |
| not modelled | 99.8 | 28 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
46 | d1offa_ |
| not modelled | 99.8 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
47 | d1fdra2 |
| not modelled | 99.8 | 15 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
48 | d1iuea_ |
| not modelled | 99.8 | 30 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
49 | d1awda_ |
| not modelled | 99.8 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
50 | d1frra_ |
| not modelled | 99.8 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
51 | d1gvha2 |
| not modelled | 99.8 | 25 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
52 | d1fxia_ |
| not modelled | 99.8 | 28 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
53 | d1ndha2 |
| not modelled | 99.8 | 23 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
54 | d2bmwa2 |
| not modelled | 99.8 | 18 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
55 | d1qfza2 |
| not modelled | 99.8 | 17 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
56 | d1f20a2 |
| not modelled | 99.8 | 21 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like
57 | d1frda_ |
| not modelled | 99.8 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
58 | d1cqxa2 |
| not modelled | 99.8 | 26 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
59 | d1pfda_ |
| not modelled | 99.8 | 23 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
60 | d1e0za_ |
| not modelled | 99.8 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
61 | d1qx4a1 |
| not modelled | 99.8 | 18 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
62 | d1wria_ |
| not modelled | 99.8 | 26 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
63 | d1czpa_ |
| not modelled | 99.8 | 26 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
64 | d1gawa2 |
| not modelled | 99.8 | 19 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
65 | d1krha1 |
| not modelled | 99.8 | 27 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
66 | d2cjoa_ |
| not modelled | 99.8 | 31 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
67 | d1fnda2 |
| not modelled | 99.8 | 16 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
68 | d1jb9a2 |
| not modelled | 99.8 | 19 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
69 | d1ddga2 |
| not modelled | 99.8 | 20 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like
70 | d2cnda1 |
| not modelled | 99.7 | 15 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
71 | d1umka1 |
| not modelled | 99.7 | 16 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
72 | d1fdra1 |
| not modelled | 99.7 | 22 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
73 | d1gaqb_ |
| not modelled | 99.7 | 24 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
74 | d1a8pa1 |
| not modelled | 99.7 | 19 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
75 | d1sm4a2 |
| not modelled | 99.7 | 17 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases
76 | d4fxca_ |
| not modelled | 99.7 | 23 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
77 | d1ndha1 |
| not modelled | 99.7 | 17 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
78 | d2bmwa1 |
| not modelled | 99.7 | 27 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
79 | d1ja1a3 |
| not modelled | 99.7 | 22 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like
80 | d1tvca1 |
| not modelled | 99.7 | 20 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
81 | d1ep3b1 |
| not modelled | 99.7 | 13 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
82 | d1sm4a1 |
| not modelled | 99.7 | 20 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
83 | d1jq4a_ |
| not modelled | 99.6 | 20 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
84 | d1qfja1 |
| not modelled | 99.6 | 20 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
85 | d1krha3 |
| not modelled | 99.6 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
86 | d1gawa1 |
| not modelled | 99.6 | 19 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
87 | d1fnda1 |
| not modelled | 99.6 | 19 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
88 | d1qfza1 |
| not modelled | 99.6 | 19 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
89 | d1jb9a1 |
| not modelled | 99.4 | 25 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
90 | c3ah7A_ |
| not modelled | 99.4 | 20 | PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004
91 | d1i7ha_ |
| not modelled | 99.4 | 23 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
92 | d1l5pa_ |
| not modelled | 99.1 | 19 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
93 | c2wlbB_ |
| not modelled | 99.0 | 15 | PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria
94 | c3huiA_ |
| not modelled | 99.0 | 18 | PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris
95 | d1xlqa1 |
| not modelled | 98.9 | 19 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
96 | c3lxfC_ |
| not modelled | 98.9 | 18 | PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans
97 | d1e9ma_ |
| not modelled | 98.9 | 16 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
98 | d1b9ra_ |
| not modelled | 98.8 | 16 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
99 | d2bt6a1 |
| not modelled | 98.8 | 14 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
100 | d2fug33 |
| not modelled | 98.2 | 16 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
101 | c1l6vA_ |
| not modelled | 97.9 | 15 | PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; PDBTitle: structure of reduced bovine adrenodoxin
102 | d1ddga1 |
| not modelled | 97.9 | 23 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
103 | d1t3qa2 |
| not modelled | 97.9 | 19 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
104 | d1vlba2 |
| not modelled | 97.7 | 18 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
105 | c1c4cA_ |
| not modelled | 97.7 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
106 | d1ffva2 |
| not modelled | 97.7 | 16 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
107 | d2bs2b2 |
| not modelled | 97.7 | 27 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
108 | d1dgja2 |
| not modelled | 97.7 | 20 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
109 | d3c8ya2 |
| not modelled | 97.6 | 18 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
110 | c1t3qD_ |
| not modelled | 97.6 | 19 | PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
111 | d1n62a2 |
| not modelled | 97.6 | 17 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
112 | d1rm6c2 |
| not modelled | 97.4 | 26 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
113 | c3hrdH_ |
| not modelled | 97.4 | 21 | PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase
114 | c1n60D_ |
| not modelled | 97.4 | 17 | PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
115 | c1rm6F_ |
| not modelled | 97.4 | 26 | PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
116 | d1kf6b2 |
| not modelled | 97.3 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
117 | c1ffuA_ |
| not modelled | 97.3 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
118 | c2h89B_ |
| not modelled | 96.9 | 19 | PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound
119 | c1vlbA_ |
| not modelled | 96.9 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
120 | c2bs2E_ |
| not modelled | 96.8 | 28 | PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0