05/01/2012 13:00:08 : INFO  : Run start: Thu Jan  5 13:00:08 GMT 2012
05/01/2012 13:00:12 : INFO  : Initialised job
05/01/2012 13:00:13 : INFO  : Renaming log file 'phyre2_20120105_130007.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/398be6b23df119f0/phyre_20120105_130007.log'
05/01/2012 13:00:14 : INFO  : Initialised job:
Sequence
>batch____
MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSL
LSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGDRLTISTPNNLFALIPSARKHLFIAG
GIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELVQHPQAEKVHLHHSSTGTRLE
LARLLADIEPGTHVYTCGPEALIEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLA
RSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERA
SQQSMLICCSRAKGKRLVLDL

05/01/2012 13:00:14 : INFO  : Checked sequence
05/01/2012 13:00:17 : INFO  : Finding homologues with PSI-BLAST
05/01/2012 13:00:17 : INFO  : PSI-BLAST 3 iterations
05/01/2012 13:02:33 : INFO  : PSI-BLAST 5 iterations
05/01/2012 13:05:36 : INFO  : Finished PSI-BLAST
05/01/2012 13:05:37 : INFO  : Running Buildali to generate a3m file
05/01/2012 13:26:38 : INFO  : Converting to HMM
05/01/2012 13:26:46 : INFO  : Calibrating HMM
05/01/2012 13:27:00 : INFO  : Searching HMM database
05/01/2012 13:35:21 : INFO  : Finished buildali
05/01/2012 13:35:26 : INFO  : Predicting secondary structure
05/01/2012 13:35:33 : INFO  : Predicted secondary structure (PSI-Pred)
05/01/2012 13:35:34 : INFO  : Predicting Disordered regions
05/01/2012 13:35:37 : INFO  : Predicted Disorder (Disopred)
05/01/2012 13:35:38 : INFO  : Running memsat_svm check
05/01/2012 13:45:21 : INFO  : Running memsat_svm full
05/01/2012 14:01:08 : INFO  : Predicted Transmembrane (memsat_svm) ID '398be6b23df119f0'
05/01/2012 14:01:10 : INFO  : Initialising fold library search
05/01/2012 14:01:13 : INFO  : Initialised search input
05/01/2012 14:01:14 : INFO  : Building Ensemble models
05/01/2012 14:01:17 : INFO  : Building hh.c2piaA_.model.1.pdb
05/01/2012 14:01:29 : INFO  : Building c2piaA_.1.pdb
05/01/2012 14:01:40 : INFO  : Building c1gvhA_.2.pdb
05/01/2012 14:01:51 : INFO  : Building c1krhA_.3.pdb
05/01/2012 14:02:02 : INFO  : Building c1ep3B_.4.pdb
05/01/2012 14:02:13 : INFO  : Building c1cqxB_.5.pdb
05/01/2012 14:02:25 : INFO  : Building c2r6hC_.6.pdb
05/01/2012 14:02:35 : INFO  : Building c2eixA_.7.pdb
05/01/2012 14:02:46 : INFO  : Building c1umkA_.8.pdb
05/01/2012 14:02:55 : INFO  : Building c1tvcA_.9.pdb
05/01/2012 14:03:04 : INFO  : Building c3fpkB_.10.pdb
05/01/2012 14:03:16 : INFO  : Building c2ok8D_.11.pdb
05/01/2012 14:03:28 : INFO  : Building c1a8pA_.12.pdb
05/01/2012 14:03:41 : INFO  : Building c1fncA_.13.pdb
05/01/2012 14:03:52 : INFO  : Building c1qgyA_.14.pdb
05/01/2012 14:04:04 : INFO  : Building c1qfjD_.15.pdb
05/01/2012 14:04:14 : INFO  : Building c2bgjB_.16.pdb
05/01/2012 14:04:24 : INFO  : Building c1cneA_.17.pdb
05/01/2012 14:04:34 : INFO  : Building c2b5oA_.18.pdb
05/01/2012 14:04:43 : INFO  : Building c1jb9A_.19.pdb
05/01/2012 14:04:51 : INFO  : Building c2rc5D_.20.pdb
05/01/2012 14:05:10 : INFO  : Finished HH model building
05/01/2012 14:05:11 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/01/2012 14:05:49 : INFO  : html domain output complete ID '398be6b23df119f0'
05/01/2012 16:38:07 : INFO  : Run end  : Thu Jan  5 16:38:06 GMT 2012
