Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	F	T	A	K	P	E	T	V	K	R	D	W	Y	V	V	D	A	T	G	K	T	L	G	R	L	A	T	E	L	A	R	R	L	R	G	K	H	K	A	E	Y	T	P	H	V	D	T	G	D	Y	I	I	V	L	N	A	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	V	A	V	T	G	N	K	R	T	D	K	V	Y	Y	H	H	T	G	H	I	G	G	I	K	Q	A	T	F	E	E	M	I	A	R	R	P	E	R	V	I	E	I	A	V	K	G	M	L	P	K	G	P	L	G	R	A	M	F	R
Secondary structure
SS confidence
Disorder																?			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Sequence		K	L	K	V	Y	A	G	N	E	H	N	H	A	A	Q	Q	P	Q	V	L	D	I
Secondary structure
SS confidence
Disorder										?		?	?					?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j01 chain N domain 1 Region: 1 - 140 Aligned: 138 Modelled: 140 Confidence: 100.0% Identity: 56% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 2zjr chain G domain 1 Region: 2 - 142 Aligned: 139 Modelled: 141 Confidence: 100.0% Identity: 55% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 3d5b chain N Region: 2 - 140 Aligned: 137 Modelled: 139 Confidence: 100.0% Identity: 55% PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. Phyre2 PDB 3cf5 chain G Region: 2 - 142 Aligned: 139 Modelled: 141 Confidence: 100.0% Identity: 55% PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans Phyre2 PDB 2gyc chain H domain 1 Region: 1 - 140 Aligned: 140 Modelled: 140 Confidence: 100.0% Identity: 100% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 2ftc chain H Region: 1 - 142 Aligned: 142 Modelled: 142 Confidence: 100.0% Identity: 33% PDB header:ribosome Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 3bbo chain L Region: 13 - 137 Aligned: 125 Modelled: 125 Confidence: 100.0% Identity: 59% PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l13; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 1s1i chain M Region: 13 - 141 Aligned: 117 Modelled: 117 Confidence: 100.0% Identity: 27% PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 3iz5 chain K Region: 5 - 141 Aligned: 125 Modelled: 125 Confidence: 100.0% Identity: 23% PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l13a (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 2zkr chain J Region: 16 - 142 Aligned: 115 Modelled: 115 Confidence: 100.0% Identity: 27% PDB header:ribosomal protein/rna Chain: J: PDB Molecule:rna expansion segment es15 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 3izc chain K Region: 13 - 141 Aligned: 117 Modelled: 129 Confidence: 100.0% Identity: 27% PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 4a1a chain I Region: 13 - 141 Aligned: 117 Modelled: 117 Confidence: 100.0% Identity: 29% PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l13a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Phyre2 PDB 3jyw chain M Region: 16 - 141 Aligned: 114 Modelled: 126 Confidence: 100.0% Identity: 28% PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Phyre2 PDB 1j3a chain A Region: 16 - 141 Aligned: 101 Modelled: 101 Confidence: 100.0% Identity: 33% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 1vqo chain J domain 1 Region: 9 - 142 Aligned: 115 Modelled: 122 Confidence: 100.0% Identity: 26% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 1qvc chain A Region: 26 - 57 Aligned: 20 Modelled: 20 Confidence: 34.0% Identity: 30% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Single strand DNA-binding domain, SSB Phyre2 PDB 3koj chain A Region: 26 - 57 Aligned: 20 Modelled: 20 Confidence: 31.5% Identity: 35% PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ycf41; PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein2 from synechococcus sp. northeast structural genomics3 consortium target snr59a. Phyre2 PDB 1z9f chain A Region: 26 - 56 Aligned: 19 Modelled: 19 Confidence: 26.8% Identity: 42% PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: crystal structure of single stranded dna-binding protein (tm0604) from2 thermotoga maritima at 2.60 a resolution Phyre2 PDB 3fma chain D Region: 10 - 26 Aligned: 17 Modelled: 17 Confidence: 24.2% Identity: 29% PDB header:protein binding Chain: D: PDB Molecule:protein smy2; PDBTitle: crystal structure of the gyf domain of smy2 in complex with a proline-2 rich peptide from bbp/scsf1 Phyre2 PDB 2vw9 chain B Region: 26 - 57 Aligned: 20 Modelled: 20 Confidence: 23.6% Identity: 25% PDB header:dna-binding protein Chain: B: PDB Molecule:single-stranded dna binding protein; PDBTitle: single stranded dna binding protein complex from2 helicobacter pylori Phyre2 1 d2j01n1 2 d2zjrg1 3 c3d5bN_ 4 c3cf5G_ 5 d2gych1 6 c2ftcH_ 7 c3bboL_ 8 c1s1iM_ 9 c3iz5K_ 10 c2zkrj_ 11 c3izcK_ 12 c4a1aI_ 13 c3jywM_ 14 d1j3aa_ 15 d1vqoj1 16 d1qvca_ 17 c3kojA_ 18 c1z9fA_ 19 c3fmaD_ 20 c2vw9B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2j01n1 100.0 56 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 2 d2zjrg1 100.0 55 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 3 c3d5bN_ 100.0 55 PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 4 c3cf5G_ 100.0 55 PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans 5 d2gych1 100.0 100 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 6 c2ftcH_ 100.0 33 PDB header:ribosome Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 7 c3bboL_ 100.0 59 PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l13; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 8 c1s1iM_ 100.0 27 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 9 c3iz5K_ 100.0 23 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l13a (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 c2zkrj_ 100.0 27 PDB header:ribosomal protein/rna Chain: J: PDB Molecule:rna expansion segment es15 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 11 c3izcK_ 100.0 27 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 12 c4a1aI_ 100.0 29 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l13a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 13 c3jywM_ 100.0 28 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 14 d1j3aa_ 100.0 33 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 15 d1vqoj1 100.0 26 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 16 d1qvca_ 34.0 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 17 c3kojA_ 31.5 35 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ycf41; PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein2 from synechococcus sp. northeast structural genomics3 consortium target snr59a. 18 c1z9fA_ 26.8 42 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: crystal structure of single stranded dna-binding protein (tm0604) from2 thermotoga maritima at 2.60 a resolution 19 c3fmaD_ 24.2 29 PDB header:protein binding Chain: D: PDB Molecule:protein smy2; PDBTitle: crystal structure of the gyf domain of smy2 in complex with a proline-2 rich peptide from bbp/scsf1 20 c2vw9B_ 23.6 25 PDB header:dna-binding protein Chain: B: PDB Molecule:single-stranded dna binding protein; PDBTitle: single stranded dna binding protein complex from2 helicobacter pylori 21 c2ra9A_ not modelled 23.2 33 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein duf1285; PDBTitle: crystal structure of a duf1285 family protein (sbal_2486) from2 shewanella baltica os155 at 1.40 a resolution 22 d2pstx1 not modelled 22.0 23 Fold:MbtH/L9 domain-like Superfamily:MbtH-like Family:MbtH-like 23 c1eqqD_ not modelled 21.6 32 PDB header:replication/rna Chain: D: PDB Molecule:single stranded dna binding protein; PDBTitle: single stranded dna binding protein and ssdna complex 24 d1tzaa_ not modelled 18.1 50 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 25 d1xq4a_ not modelled 17.8 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 26 d2gpfa1 not modelled 17.4 23 Fold:MbtH/L9 domain-like Superfamily:MbtH-like Family:MbtH-like 27 d2q07a1 not modelled 17.1 10 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 28 c2f1eA_ not modelled 17.0 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 29 d1puja_ not modelled 17.0 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 30 d1xvsa_ not modelled 16.9 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 31 c2khrA_ not modelled 15.3 23 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein mbth; PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis 32 d1eyga_ not modelled 15.0 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 33 d2bm8a1 not modelled 13.5 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:CmcI-like 34 c2p8tA_ not modelled 13.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph0730; PDBTitle: hypothetical protein ph0730 from pyrococcus horikoshii ot3 35 d1ue1a_ not modelled 13.0 35 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 36 d2d7na1 not modelled 12.7 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 37 c2q07A_ not modelled 12.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af0587; PDBTitle: crystal structure of af0587, a protein of unknown function 38 c3tqyA_ not modelled 12.1 35 PDB header:transferase Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: structure of a single-stranded dna-binding protein (ssb), from2 coxiella burnetii 39 c2ihfA_ not modelled 11.2 37 PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus 40 c3eivB_ not modelled 11.1 32 PDB header:dna binding protein Chain: B: PDB Molecule:single-stranded dna-binding protein 2; PDBTitle: crystal structure of single-stranded dna-binding protein2 from streptomyces coelicolor 41 c2e6zA_ not modelled 10.3 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 42 c3rhfB_ not modelled 10.2 44 PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1 43 c3pgzB_ not modelled 10.2 27 PDB header:dna binding protein Chain: B: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of a single strand binding protein (ssb) from2 bartonella henselae 44 c3czqA_ not modelled 9.9 24 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from2 sinorhizobium meliloti 45 c1ue7A_ not modelled 9.8 25 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: crystal structure of the single-stranded dna-binding2 protein from mycobacterium tuberculosis 46 d1v1qa_ not modelled 9.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 47 c3czpA_ not modelled 8.8 31 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from pseudomonas2 aeruginosa pa01 48 c2iheA_ not modelled 8.6 36 PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of wild-type single-stranded dna binding protein2 from thermus aquaticus 49 c2l9dA_ not modelled 8.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of the protein yp_546394.1, the first structural2 representative of the pfam family pf12112 50 c2rndA_ not modelled 8.4 29 PDB header:endocytosis Chain: A: PDB Molecule:myc box-dependent-interacting protein 1; PDBTitle: structure of the n-terminal barpeptide in dpc micelles 51 c1is7F_ not modelled 8.2 14 PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex 52 d1a8ra_ not modelled 8.1 17 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 53 d2d7pa1 not modelled 8.1 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 54 d2d7ma1 not modelled 7.6 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 55 c3iswA_ not modelled 7.4 17 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr 56 c3mx7A_ not modelled 7.1 19 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd 57 d2w0pa1 not modelled 6.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 58 d2ntka1 not modelled 6.9 26 Fold:Ntn hydrolase-like Superfamily:Archaeal IMP cyclohydrolase PurO Family:Archaeal IMP cyclohydrolase PurO 59 d2do3a1 not modelled 6.7 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 60 c2l8kA_ not modelled 6.6 31 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 7; PDBTitle: nmr structure of the arterivirus nonstructural protein 7 alpha (nsp72 alpha) 61 d1txya_ not modelled 6.6 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 62 d2exna1 not modelled 6.4 31 Fold:MOSC N-terminal domain-like Superfamily:MOSC N-terminal domain-like Family:MOSC N-terminal domain-like 63 c3ec1A_ not modelled 6.4 23 PDB header:hydrolase, signaling protein Chain: A: PDB Molecule:yqeh gtpase; PDBTitle: structure of yqeh gtpase from geobacillus stearothermophilus2 (an atnos1 / atnoa1 ortholog) 64 c2wojD_ not modelled 6.3 19 PDB header:hydrolase Chain: D: PDB Molecule:atpase get3; PDBTitle: adp-alf4 complex of s. cerevisiae get3 65 c3iswB_ not modelled 6.3 17 PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr 66 c2brqA_ not modelled 6.3 17 PDB header:structural protein Chain: A: PDB Molecule:filamin a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide 67 c2w0pB_ not modelled 6.3 17 PDB header:cell adhesion Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide 68 d1wpla_ not modelled 6.2 14 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 69 c3k6qB_ not modelled 6.2 11 PDB header:ligand binding protein Chain: B: PDB Molecule:putative ligand binding protein; PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution 70 d1a9xa3 not modelled 6.1 19 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 71 d1v5pa_ not modelled 6.1 21 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 72 c3cf4A_ not modelled 5.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 73 c3bjoA_ not modelled 5.8 19 PDB header:nucleotide binding protein Chain: A: PDB Molecule:uncharacterized atp-binding protein mj1010; PDBTitle: crystal structure of the c-terminal domain of a possible atp-binding2 protein from methanocaldococcus jannaschii dsm 2661 74 c2k7qA_ not modelled 5.6 14 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 18-19 75 c2r37A_ not modelled 5.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 3; PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant) 76 d2bp3a1 not modelled 5.5 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 77 d2h9fa2 not modelled 5.5 19 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0