PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3d5bN_

Fold library id	PDB Header	Molecule	Title
c3d5bN_	PDB header: ribosome	Chain: N: PDB Molecule: 50s ribosomal protein l13;	PDBTitle: structural basis for translation termination on the 70s2 ribosome. this file contains the 50s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s4 ribosomes as described in remark 400.

Links to external resources
Added to library: Tue Mar 16 11:58:11 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K T Y V P K Q V E P R W V L I D A E G K T L G R L A T K I A T L L R G K H R P D W T P N V A M G D F V V V V N A D K I R V T G K K L E Q K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B T G G G S T T
T T T
T T
B
S S T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . .

Sequence Y T R Y S G Y P G G L K K I P L E K M L A T H P E R V L E H A V K G M L P K G P L G R R L F K R L K V Y A G P D H P H Q A Q R P E K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S
T S
S S T
S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	T	Y	V	P	K	Q	V	E	P	R	W	V	L	I	D	A	E	G	K	T	L	G	R	L	A	T	K	I	A	T	L	L	R	G	K	H	R	P	D	W	T	P	N	V	A	M	G	D	F	V	V	V	V	N	A	D	K	I	R	V	T	G	K	K	L	E	Q	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T		B													T	G	G	G	S	T	T			T	T	T												T	T		B			S	S	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Sequence	Y	T	R	Y	S	G	Y	P	G	G	L	K	K	I	P	L	E	K	M	L	A	T	H	P	E	R	V	L	E	H	A	V	K	G	M	L	P	K	G	P	L	G	R	R	L	F	K	R	L	K	V	Y	A	G	P	D	H	P	H	Q	A	Q	R	P	E	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	T	T													S		T												S		S	S									T					S	S	S						S