Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	G	T	F	H	K	K	K	R	F	Y	I	N	K	I	K	I	N	F	L	S	F	L	F	R	N	K	I	N	N	Q	I	T	D	P	A	Q	V	K	S	C	L	I	I	H	D	N	N	K	L	G	D	L	I	V	L	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																						?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	Y	R	E	L	Y	S	K	G	V	K	I	T	L	L	T	N	R	K	G	G	E	F	L	S	N	N	K	N	I	F	E	F	C	I	K	E	S	T	G	F	L	E	M	L	T	L	C	K	H	L	R	D	L	Q	F	D	I	V	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	P	F	E	T	M	P	S	F	K	H	S	L	I	L	S	S	L	K	D	S	Y	I	L	G	F	D	H	W	Y	K	R	Y	Y	S	F	Y	H	P	H	D	E	C	L	K	E	H	M	S	T	R	A	I	E	I	L	K	H	I	Y
Secondary structure
SS confidence
Disorder						?		?																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	E	G	K	F	S	T	N	Y	D	L	H	L	P	V	D	V	E	D	K	I	K	E	F	I	G	D	T	R	I	V	I	I	N	P	L	G	A	K	K	I	C	R	L	T	F	E	Q	I	K	V	I	Y	Q	E	V	K	T	H	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	N	Y	R	I	I	F	T	G	L	P	Q	D	L	L	T	I	P	I	L	E	I	E	T	L	P	F	D	E	F	I	Y	T	V	A	L	T	K	Y	S	D	F	V	I	S	V	D	T	A	L	V	H	I	A	A	A	Y	H	K	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Sequence		T	L	A	F	Y	P	N	S	R	T	P	E	Y	P	S	H	L	I	W	S	P	N	H	H	K	S	I	Q	I	V	S	P	T	Y	T	V	K	D	I	D	T	E	T	L	T	N	S	V	K	R	L	S	C	I	D	K	K
Secondary structure
SS confidence
Disorder																																																				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3tov chain B Region: 34 - 352 Aligned: 307 Modelled: 317 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 Phyre2 PDB 1psw chain A Region: 42 - 352 Aligned: 296 Modelled: 308 Confidence: 100.0% Identity: 18% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: ADP-heptose LPS heptosyltransferase II Phyre2 PDB 2h1f chain B Region: 42 - 350 Aligned: 283 Modelled: 295 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp Phyre2 PDB 1v4v chain A Region: 41 - 352 Aligned: 293 Modelled: 296 Confidence: 99.2% Identity: 14% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3ot5 chain D Region: 42 - 352 Aligned: 294 Modelled: 291 Confidence: 99.1% Identity: 12% PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes Phyre2 PDB 1o6c chain A Region: 42 - 352 Aligned: 287 Modelled: 310 Confidence: 98.8% Identity: 17% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 1f6d chain A Region: 42 - 352 Aligned: 294 Modelled: 296 Confidence: 98.8% Identity: 14% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3dzc chain A Region: 41 - 351 Aligned: 294 Modelled: 294 Confidence: 98.4% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Phyre2 PDB 3hbm chain A Region: 41 - 304 Aligned: 243 Modelled: 258 Confidence: 97.9% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni Phyre2 PDB 1f0k chain A Region: 41 - 351 Aligned: 294 Modelled: 305 Confidence: 97.9% Identity: 12% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Peptidoglycan biosynthesis glycosyltransferase MurG Phyre2 PDB 1pn3 chain A Region: 42 - 352 Aligned: 297 Modelled: 311 Confidence: 97.7% Identity: 11% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Gtf glycosyltransferase Phyre2 PDB 2xcu chain C Region: 37 - 303 Aligned: 250 Modelled: 267 Confidence: 97.3% Identity: 12% PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Phyre2 PDB 2vsn chain B Region: 11 - 308 Aligned: 290 Modelled: 298 Confidence: 97.1% Identity: 9% PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation Phyre2 PDB 2r60 chain A Region: 40 - 303 Aligned: 261 Modelled: 263 Confidence: 97.0% Identity: 10% PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii Phyre2 PDB 3oy2 chain A Region: 42 - 303 Aligned: 259 Modelled: 260 Confidence: 96.8% Identity: 11% PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Phyre2 PDB 2jjm chain H Region: 42 - 352 Aligned: 293 Modelled: 311 Confidence: 96.8% Identity: 11% PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. Phyre2 PDB 3oth chain B Region: 41 - 352 Aligned: 286 Modelled: 306 Confidence: 96.7% Identity: 12% PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form Phyre2 PDB 2gej chain A Region: 42 - 303 Aligned: 256 Modelled: 262 Confidence: 96.6% Identity: 10% PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man Phyre2 PDB 3iaa chain B Region: 42 - 352 Aligned: 298 Modelled: 311 Confidence: 96.3% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form Phyre2 PDB 3oka chain A Region: 41 - 352 Aligned: 297 Modelled: 312 Confidence: 96.1% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) Phyre2 1 c3tovB_ 2 d1pswa_ 3 c2h1fB_ 4 d1v4va_ 5 c3ot5D_ 6 d1o6ca_ 7 d1f6da_ 8 c3dzcA_ 9 c3hbmA_ 10 d1f0ka_ 11 d1pn3a_ 12 c2xcuC_ 13 c2vsnB_ 14 c2r60A_ 15 c3oy2A_ 16 c2jjmH_ 17 c3othB_ 18 c2gejA_ 19 c3iaaB_ 20 c3okaA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3tovB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 2 d1pswa_ 100.0 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 3 c2h1fB_ 100.0 15 PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp 4 d1v4va_ 99.2 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 5 c3ot5D_ 99.1 12 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 6 d1o6ca_ 98.8 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 7 d1f6da_ 98.8 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 8 c3dzcA_ 98.4 13 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 9 c3hbmA_ 97.9 13 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 10 d1f0ka_ 97.9 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 11 d1pn3a_ 97.7 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 12 c2xcuC_ 97.3 12 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp 13 c2vsnB_ 97.1 9 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 14 c2r60A_ 97.0 10 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 15 c3oy2A_ 96.8 11 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 16 c2jjmH_ 96.8 11 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 17 c3othB_ 96.7 12 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 18 c2gejA_ 96.6 10 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 19 c3iaaB_ 96.3 11 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 20 c3okaA_ 96.1 11 PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) 21 c3d0qB_ not modelled 95.4 9 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 22 c3c4vB_ not modelled 95.3 12 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 23 d1rrva_ not modelled 95.0 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 24 c2x6rA_ not modelled 94.2 16 PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose 25 c2p6pB_ not modelled 93.5 10 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 26 c2o6lA_ not modelled 93.3 14 PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7 27 c2q6vA_ not modelled 93.3 13 PDB header:transferase Chain: A: PDB Molecule:glucuronosyltransferase gumk; PDBTitle: crystal structure of gumk in complex with udp 28 c2iyaB_ not modelled 93.1 8 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 29 d1iira_ not modelled 91.5 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 30 c3ia7A_ not modelled 91.1 13 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 31 c3qhpB_ not modelled 90.2 8 PDB header:transferase Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori 32 d2ptza1 not modelled 89.5 13 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 33 c2iyfA_ not modelled 88.2 13 PDB header:transferase Chain: A: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 34 c2khzB_ not modelled 88.2 15 PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl 35 d1w6ta1 not modelled 87.7 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 36 c3ehdA_ not modelled 87.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of conserved protein from enterococcus faecalis v583 37 d2acva1 not modelled 86.6 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 38 d1iyxa1 not modelled 85.6 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 39 d2akza1 not modelled 81.8 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 40 d2f62a1 not modelled 79.3 32 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 41 d2c1xa1 not modelled 78.9 8 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 42 d1s2da_ not modelled 78.1 16 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 43 c2xmpB_ not modelled 77.9 18 PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp 44 c3l7mC_ not modelled 76.7 13 PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a 45 d1f8ya_ not modelled 76.2 22 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 46 c2x0dA_ not modelled 72.8 10 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 47 c2ptwA_ not modelled 70.6 13 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of the t. brucei enolase complexed with2 sulphate, identification of a metal binding site iv 48 c3zquA_ not modelled 69.9 7 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 49 d2g8la1 not modelled 68.8 10 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 50 d1a9xa3 not modelled 67.7 16 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 51 c3pe3D_ not modelled 67.5 10 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 52 c3cwcB_ not modelled 65.5 27 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 53 c3otrC_ not modelled 65.4 7 PDB header:lyase Chain: C: PDB Molecule:enolase; PDBTitle: 2.75 angstrom crystal structure of enolase 1 from toxoplasma gondii 54 d1pdza1 not modelled 64.8 12 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 55 d2fyma1 not modelled 62.1 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 56 c3qjgD_ not modelled 59.7 23 PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus 57 c2jzcA_ not modelled 58.6 21 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 58 c3pdiB_ not modelled 57.4 9 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 59 d1mvla_ not modelled 57.3 9 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 60 c1mvlA_ not modelled 57.3 9 PDB header:lyase Chain: A: PDB Molecule:ppc decarboxylase athal3a; PDBTitle: ppc decarboxylase mutant c175s 61 d2pq6a1 not modelled 57.3 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 62 d2al1a1 not modelled 56.7 12 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 63 c3qtpB_ not modelled 53.5 11 PDB header:lyase Chain: B: PDB Molecule:enolase 1; PDBTitle: crystal structure analysis of entamoeba histolytica enolase 64 c3uj2C_ not modelled 51.8 17 PDB header:lyase Chain: C: PDB Molecule:enolase 1; PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate 65 d1xfia_ not modelled 51.1 33 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 66 c3afoB_ not modelled 50.3 14 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 67 c2ejbA_ not modelled 48.1 12 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 68 c2pa6A_ not modelled 47.5 17 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of mj0232 from methanococcus jannaschii 69 c3thdD_ not modelled 47.2 12 PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin 70 d1vbga2 not modelled 46.0 8 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 71 d1kbla2 not modelled 45.9 7 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 72 d1ybha1 not modelled 45.8 11 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 73 c2fymA_ not modelled 44.2 16 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e. 74 d1p3y1_ not modelled 41.0 16 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 75 c3tqpA_ not modelled 39.9 13 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: structure of an enolase (eno) from coxiella burnetii 76 c3q3hA_ not modelled 39.8 9 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 77 c3d3aA_ not modelled 38.9 9 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron 78 c3qn3B_ not modelled 38.8 14 PDB header:lyase Chain: B: PDB Molecule:enolase; PDBTitle: phosphopyruvate hydratase from campylobacter jejuni. 79 d1g5qa_ not modelled 36.6 16 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 80 c3qvjB_ not modelled 34.3 17 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 81 c3ogrA_ not modelled 33.6 13 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 82 c3aerB_ not modelled 32.5 10 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 83 d1a9xa4 not modelled 32.3 10 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 84 c3mcuF_ not modelled 31.2 7 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 85 d1to6a_ not modelled 30.3 19 Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I 86 c1qgeD_ not modelled 29.6 7 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 87 c3k94A_ not modelled 29.3 24 PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from geobacillus2 thermodenitrificans, northeast structural genomics consortium target3 gtr2 88 d2ffja1 not modelled 29.3 14 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 89 d2f9fa1 not modelled 27.5 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 90 d1m5wa_ not modelled 26.8 16 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 91 d2jfga1 not modelled 26.7 12 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 92 c3lqkA_ not modelled 26.0 11 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 93 c1iyxA_ not modelled 25.8 16 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of enolase from enterococcus hirae 94 c1l8pC_ not modelled 23.9 15 PDB header:lyase Chain: C: PDB Molecule:enolase 1; PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1 95 c3cq9C_ not modelled 23.2 14 PDB header:transferase Chain: C: PDB Molecule:uncharacterized protein lp_1622; PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114 96 d2bisa1 not modelled 21.4 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 97 c3bzjA_ not modelled 20.7 8 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 98 c2hwwC_ not modelled 19.3 17 PDB header:rna binding protein Chain: C: PDB Molecule:telomerase-binding protein est1a; PDBTitle: structure of pin domain of human smg6 99 c3lm8D_ not modelled 19.1 31 PDB header:transferase Chain: D: PDB Molecule:thiamine pyrophosphokinase; PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0