Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	E	I	T	L	C	Q	R	A	L	E	L	I	E	Q	Q	A	A	K	H	G	A	K	R	V	T	G	V	W	L	K	I	G	A	F	S	C	V	E	T	S	S	L	A	F	C	F	D	L	V	C	R	G	S	V	A	E	G	C
Secondary structure
SS confidence
Disorder		?	?																			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Sequence		K	L	H	L	E	E	Q	E	A	E	C	W	C	E	T	C	Q	Q	Y	V	T	L	L	T	Q	R	V	R	R	C	P	Q	C	H	G	D	M	L	Q	I	V	A	D	D	G	L	Q	I	R	R	I	E	I	D	Q	E
Secondary structure
SS confidence
Disorder																																																						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kdx chain A Region: 1 - 116 Aligned: 116 Modelled: 116 Confidence: 100.0% Identity: 22% PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein Phyre2 PDB 3a44 chain D Region: 3 - 116 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 26% PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form Phyre2 PDB 1hk8 chain A Region: 29 - 102 Aligned: 67 Modelled: 74 Confidence: 97.1% Identity: 12% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: Class III anaerobic ribonucleotide reductase NRDD subunit Phyre2 PDB 1hk8 chain A Region: 29 - 102 Aligned: 67 Modelled: 74 Confidence: 97.1% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp Phyre2 PDB 2gmg chain A domain 1 Region: 72 - 99 Aligned: 28 Modelled: 28 Confidence: 95.4% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PF0610-like Phyre2 PDB 1ltl chain A Region: 53 - 113 Aligned: 61 Modelled: 61 Confidence: 95.0% Identity: 15% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: DNA replication initiator (cdc21/cdc54) N-terminal domain Phyre2 PDB 2k2d chain A Region: 69 - 109 Aligned: 40 Modelled: 41 Confidence: 94.9% Identity: 13% PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c Phyre2 PDB 1ltl chain E Region: 53 - 113 Aligned: 61 Modelled: 61 Confidence: 94.7% Identity: 15% PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum Phyre2 PDB 2hr5 chain B Region: 7 - 97 Aligned: 81 Modelled: 89 Confidence: 94.6% Identity: 14% PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form Phyre2 PDB 1dvb chain A Region: 2 - 97 Aligned: 89 Modelled: 96 Confidence: 94.3% Identity: 19% PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin Phyre2 PDB 2lcq chain A Region: 70 - 96 Aligned: 26 Modelled: 27 Confidence: 93.8% Identity: 19% PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii Phyre2 PDB 1yuz chain B Region: 2 - 97 Aligned: 83 Modelled: 96 Confidence: 93.4% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin Phyre2 PDB 1brf chain A Region: 69 - 105 Aligned: 37 Modelled: 37 Confidence: 92.5% Identity: 19% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Rubredoxin Phyre2 PDB 1lko chain A domain 2 Region: 65 - 97 Aligned: 32 Modelled: 33 Confidence: 92.2% Identity: 25% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Rubredoxin Phyre2 PDB 1h7v chain A Region: 64 - 106 Aligned: 43 Modelled: 43 Confidence: 92.1% Identity: 23% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Rubredoxin Phyre2 PDB 2kn9 chain A Region: 70 - 96 Aligned: 27 Modelled: 27 Confidence: 92.1% Identity: 22% PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a Phyre2 PDB 1qcv chain A Region: 69 - 96 Aligned: 28 Modelled: 28 Confidence: 92.0% Identity: 11% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Rubredoxin Phyre2 PDB 1iu5 chain A Region: 69 - 96 Aligned: 28 Modelled: 28 Confidence: 91.5% Identity: 21% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Rubredoxin Phyre2 PDB 2v3b chain B Region: 69 - 96 Aligned: 28 Modelled: 28 Confidence: 91.4% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. Phyre2 PDB 1s24 chain A Region: 70 - 96 Aligned: 27 Modelled: 27 Confidence: 91.3% Identity: 30% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Rubredoxin Phyre2 1 c2kdxA_ 2 c3a44D_ 3 d1hk8a_ 4 c1hk8A_ 5 d2gmga1 6 d1ltla_ 7 c2k2dA_ 8 c1ltlE_ 9 c2hr5B_ 10 c1dvbA_ 11 c2lcqA_ 12 c1yuzB_ 13 d1brfa_ 14 d1lkoa2 15 d1h7va_ 16 c2kn9A_ 17 d1qcva_ 18 d1iu5a_ 19 c2v3bB_ 20 d1s24a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kdxA_ 100.0 22 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 2 c3a44D_ 100.0 26 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 3 d1hk8a_ 97.1 12 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 4 c1hk8A_ 97.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 5 d2gmga1 95.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 6 d1ltla_ 95.0 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA replication initiator (cdc21/cdc54) N-terminal domain 7 c2k2dA_ 94.9 13 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 8 c1ltlE_ 94.7 15 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 9 c2hr5B_ 94.6 14 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 10 c1dvbA_ 94.3 19 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 11 c2lcqA_ 93.8 19 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 12 c1yuzB_ 93.4 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 13 d1brfa_ 92.5 19 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 14 d1lkoa2 92.2 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 15 d1h7va_ 92.1 23 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 16 c2kn9A_ 92.1 22 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 17 d1qcva_ 92.0 11 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 18 d1iu5a_ 91.5 21 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 19 c2v3bB_ 91.4 21 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 20 d1s24a_ 91.3 30 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 21 c1s24A_ not modelled 91.3 30 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 22 d1dx8a_ not modelled 91.3 26 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 23 d2cona1 not modelled 91.0 19 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 24 d1iroa_ not modelled 91.0 21 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 25 d6rxna_ not modelled 90.7 18 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 26 d1rb9a_ not modelled 90.6 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 27 d2rdva_ not modelled 90.5 21 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 28 d4rxna_ not modelled 89.9 17 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 29 d2dsxa1 not modelled 89.7 16 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 30 c2aklA_ not modelled 89.2 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 31 d2gnra1 not modelled 89.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 32 d2akla2 not modelled 87.0 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 33 d1nnqa2 not modelled 85.8 20 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 34 d2fiya1 not modelled 85.6 16 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 35 c3tsuA_ not modelled 84.9 28 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 36 d1yuza2 not modelled 83.3 19 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 37 c2vl6C_ not modelled 83.1 10 PDB header:dna binding protein Chain: C: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain 38 c3f9vA_ not modelled 79.6 11 PDB header:hydrolase Chain: A: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: crystal structure of a near full-length archaeal mcm: functional2 insights for an aaa+ hexameric helicase 39 c3floD_ not modelled 79.6 20 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 40 d1m2ka_ not modelled 78.8 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 41 c3k35D_ not modelled 77.7 27 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 42 c3pihA_ not modelled 77.4 28 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 43 c3glsC_ not modelled 77.2 37 PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 44 c3bvoA_ not modelled 77.1 26 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 45 c1q14A_ not modelled 75.4 19 PDB header:hydrolase Chain: A: PDB Molecule:hst2 protein; PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2 46 d1yc5a1 not modelled 74.8 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 47 c2gb5B_ not modelled 74.7 21 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 48 c3pkiF_ not modelled 74.6 27 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 49 c3ir9A_ not modelled 74.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 50 d2dkta1 not modelled 73.9 22 Fold:CHY zinc finger-like Superfamily:CHY zinc finger-like Family:CHY zinc finger 51 c2f9iD_ not modelled 73.5 18 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 52 c3cngC_ not modelled 73.3 23 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 53 d2j0151 not modelled 73.2 19 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 54 d1q1aa_ not modelled 73.1 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 55 d1qxfa_ not modelled 72.6 11 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 56 d2apob1 not modelled 72.6 37 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 57 c1i3qI_ not modelled 72.4 30 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 58 d2zjrz1 not modelled 72.4 19 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 59 c3ky9B_ not modelled 71.7 17 PDB header:apoptosis Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: autoinhibited vav1 60 c3h0gL_ not modelled 71.7 30 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 61 c3iz6X_ not modelled 70.6 23 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 62 c3lpeF_ not modelled 70.3 30 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 63 c3axtA_ not modelled 70.1 19 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 64 d2ey4e1 not modelled 70.0 37 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 65 c2ba1B_ not modelled 68.5 20 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 66 c3izbX_ not modelled 68.0 14 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 67 c2ktvA_ not modelled 68.0 9 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: human erf1 c-domain, "open" conformer 68 d2jnea1 not modelled 67.6 23 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 69 c2jneA_ not modelled 67.6 23 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 70 d1ma3a_ not modelled 67.0 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 71 c1m2oA_ not modelled 66.2 14 PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex 72 c2j6aA_ not modelled 65.8 22 PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex. 73 c2nn6I_ not modelled 65.2 24 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 74 c2k5cA_ not modelled 65.2 29 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 75 c2ja6L_ not modelled 64.8 25 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 76 c2kwqA_ not modelled 64.2 15 PDB header:dna binding protein Chain: A: PDB Molecule:protein mcm10 homolog; PDBTitle: mcm10 c-terminal dna binding domain 77 d1s5pa_ not modelled 63.6 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 78 d1ryqa_ not modelled 62.8 41 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 79 d2f9yb1 not modelled 62.2 29 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 80 c2f9yB_ not modelled 62.2 29 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 81 c2xzm6_ not modelled 62.1 20 PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 82 c2vrwB_ not modelled 61.0 17 PDB header:signaling protein Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor 83 d1x6ha1 not modelled 60.4 23 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 84 d2qtva5 not modelled 60.3 14 Fold:Rubredoxin-like Superfamily:Zn-finger domain of Sec23/24 Family:Zn-finger domain of Sec23/24 85 c2pziA_ not modelled 60.2 24 PDB header:transferase Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng; PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017 86 d1vd4a_ not modelled 60.0 31 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 87 d2nn6i1 not modelled 59.7 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 88 c1jocA_ not modelled 59.2 29 PDB header:membrane protein Chain: A: PDB Molecule:early endosomal autoantigen 1; PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate 89 c3h0gI_ not modelled 59.0 30 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 90 d1dl6a_ not modelled 58.7 24 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 91 d2qam01 not modelled 58.3 8 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 92 c3gn5B_ not modelled 57.6 25 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 93 c3jwpA_ not modelled 57.1 30 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue; PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp 94 c1ee8A_ not modelled 57.1 28 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 95 c3zyqA_ not modelled 57.0 24 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 96 c3bjiA_ not modelled 56.6 17 PDB header:signaling protein Chain: A: PDB Molecule:proto-oncogene vav; PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1 97 d1k81a_ not modelled 56.2 16 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 98 d2ayja1 not modelled 54.8 28 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L40e 99 c2jrpA_ not modelled 54.7 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 100 c2e9hA_ not modelled 54.5 13 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 101 c2emcA_ not modelled 53.3 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 641-2 673) of human zinc finger protein 473 102 d1pfta_ not modelled 53.2 25 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 103 c2hjhB_ not modelled 52.8 19 PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase 104 c2bx9J_ not modelled 52.0 27 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 105 c2epqA_ not modelled 52.0 17 PDB header:transcription Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing PDBTitle: solution structure of the third zinc finger domain of zinc2 finger protein 278 106 d1nuia2 not modelled 51.8 13 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 107 c2opfA_ not modelled 51.6 36 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 108 c3f2cA_ not modelled 50.9 18 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 109 c1nnjA_ not modelled 50.4 22 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 110 c2e2zA_ not modelled 50.4 24 PDB header:protein transport, chaperone regulator Chain: A: PDB Molecule:tim15; PDBTitle: solution nmr structure of yeast tim15, co-chaperone of2 mitochondrial hsp70 111 d1pfva3 not modelled 50.3 21 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 112 c3ld0Q_ not modelled 50.2 27 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 113 d1p91a_ not modelled 49.8 26 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 114 c1dvpA_ not modelled 48.7 24 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 115 d2ct7a1 not modelled 48.3 28 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 116 c1k82D_ not modelled 47.5 27 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 117 c2f5qA_ not modelled 46.5 23 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 118 c3mv2A_ not modelled 46.2 7 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 119 d1wfka_ not modelled 46.2 27 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 120 c2qkdA_ not modelled 46.0 12 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0