Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	S	V	F	D	I	F	K	I	G	I	G	P	S	S	S	H	T	V	G	P	M	K	A	G	K	Q	F	T	D	D	L	I	A	R	N	L	L	K	D	V	T	R	V	V	V	D	V	Y	G	S	L	S	L	T	G	K	G	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?			?																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	T	D	I	A	I	I	M	G	L	A	G	N	L	P	D	T	V	D	I	D	S	I	P	S	F	I	Q	D	V	N	T	H	G	R	L	M	L	A	N	G	Q	H	E	V	E	F	P	V	D	Q	C	M	N	F	H	A	D	N	L
Secondary structure
SS confidence
Disorder																																	?					?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	L	H	E	N	G	M	R	I	T	A	L	A	G	D	K	V	V	Y	S	Q	T	Y	Y	S	I	G	G	G	F	I	V	D	E	E	H	F	G	Q	Q	D	S	A	P	V	E	V	P	Y	P	Y	S	S	A	A	D	L	Q	K	H
Secondary structure
SS confidence
Disorder																																				?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	Q	E	T	G	L	S	L	S	G	L	M	M	K	N	E	L	A	L	H	S	K	E	E	L	E	Q	H	L	A	N	V	W	E	V	M	R	G	G	I	E	R	G	I	S	T	E	G	V	L	P	G	K	L	R	V	P	R	R	A
Secondary structure
SS confidence
Disorder																			?		?	?																								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	A	L	R	R	M	L	V	S	Q	D	K	T	T	T	D	P	M	A	V	V	D	W	I	N	M	F	A	L	A	V	N	E	E	N	A	A	G	G	R	V	V	T	A	P	T	N	G	A	C	G	I	I	P	A	V	L	A	Y	Y
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?	?	?												?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	K	F	I	R	E	V	N	A	N	S	L	A	R	Y	L	L	V	A	S	A	I	G	S	L	Y	K	M	N	A	S	I	S	G	A	E	V	G	C	Q	G	E	V	G	V	A	C	S	M	A	A	A	G	L	A	E	L	L	G	A
Secondary structure
SS confidence
Disorder								?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		S	P	A	Q	V	C	I	A	A	E	I	A	M	E	H	N	L	G	L	T	C	D	P	V	A	G	Q	V	Q	V	P	C	I	E	R	N	A	I	A	A	V	K	A	V	N	A	A	R	M	A	L	R	R	T	S	E	P	R	V	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Sequence		L	D	K	V	I	E	T	M	Y	E	T	G	K	D	M	N	A	K	Y	R	E	T	S	R	G	G	L	A	M	K	I	V	A	C	D
Secondary structure
SS confidence
Disorder																																?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2iaf chain A domain 1 Region: 16 - 159 Aligned: 138 Modelled: 144 Confidence: 100.0% Identity: 42% Fold: FwdE/GAPDH domain-like Superfamily: Serine metabolism enzymes domain Family: Serine dehydratase beta chain-like Phyre2 PDB 1ygy chain A Region: 22 - 151 Aligned: 107 Modelled: 112 Confidence: 99.6% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis Phyre2 PDB 1ygy chain A domain 4 Region: 22 - 151 Aligned: 106 Modelled: 112 Confidence: 99.3% Identity: 19% Fold: FwdE/GAPDH domain-like Superfamily: Serine metabolism enzymes domain Family: SerA intervening domain-like Phyre2 PDB 2hp0 chain A Region: 188 - 422 Aligned: 214 Modelled: 235 Confidence: 98.0% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:ids-epimerase; PDBTitle: crystal structure of iminodisuccinate epimerase Phyre2 PDB 1szq chain A Region: 289 - 414 Aligned: 121 Modelled: 126 Confidence: 97.8% Identity: 17% Fold: 2-methylcitrate dehydratase PrpD Superfamily: 2-methylcitrate dehydratase PrpD Family: 2-methylcitrate dehydratase PrpD Phyre2 PDB 3u4g chain A Region: 348 - 379 Aligned: 32 Modelled: 29 Confidence: 60.3% Identity: 34% PDB header:transferase Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase; PDBTitle: the structure of cobt from pyrococcus horikoshii Phyre2 PDB 3s1s chain A Region: 361 - 386 Aligned: 26 Modelled: 26 Confidence: 44.0% Identity: 31% PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi Phyre2 PDB 2kel chain B Region: 175 - 212 Aligned: 29 Modelled: 38 Confidence: 27.4% Identity: 21% PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 Phyre2 PDB 1ug2 chain A Region: 175 - 223 Aligned: 47 Modelled: 49 Confidence: 26.3% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Myb/SANT domain Phyre2 PDB 1kny chain A Region: 11 - 63 Aligned: 50 Modelled: 53 Confidence: 26.2% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:kanamycin nucleotidyltransferase; PDBTitle: kanamycin nucleotidyltransferase Phyre2 PDB 1g64 chain B Region: 417 - 443 Aligned: 27 Modelled: 27 Confidence: 23.8% Identity: 19% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1no5 chain A Region: 46 - 63 Aligned: 18 Modelled: 18 Confidence: 22.4% Identity: 22% Fold: Nucleotidyltransferase Superfamily: Nucleotidyltransferase Family: Catalytic subunit of bi-partite nucleotidyltransferase Phyre2 PDB 1g5t chain A Region: 394 - 443 Aligned: 50 Modelled: 50 Confidence: 19.1% Identity: 20% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 2rkb chain E Region: 1 - 52 Aligned: 51 Modelled: 52 Confidence: 18.0% Identity: 20% PDB header:lyase Chain: E: PDB Molecule:serine dehydratase-like; PDBTitle: serine dehydratase like-1 from human cancer cells Phyre2 PDB 1pwh chain A Region: 1 - 52 Aligned: 52 Modelled: 52 Confidence: 18.0% Identity: 21% Fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes Family: Tryptophan synthase beta subunit-like PLP-dependent enzymes Phyre2 PDB 1yy3 chain A Region: 282 - 288 Aligned: 7 Modelled: 7 Confidence: 14.5% Identity: 57% PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) Phyre2 PDB 2gke chain A domain 2 Region: 336 - 365 Aligned: 28 Modelled: 30 Confidence: 13.8% Identity: 32% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: Diaminopimelate epimerase Phyre2 PDB 2iif chain A Region: 185 - 223 Aligned: 39 Modelled: 39 Confidence: 13.7% Identity: 21% PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna Phyre2 PDB 1kny chain A domain 2 Region: 11 - 63 Aligned: 50 Modelled: 53 Confidence: 13.2% Identity: 22% Fold: Nucleotidyltransferase Superfamily: Nucleotidyltransferase Family: Kanamycin nucleotidyltransferase (KNTase), N-terminal domain Phyre2 PDB 1ryp chain A Region: 125 - 214 Aligned: 90 Modelled: 90 Confidence: 13.1% Identity: 13% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Proteasome subunits Phyre2 1 d2iafa1 2 c1ygyA_ 3 d1ygya4 4 c2hp0A_ 5 d1szqa_ 6 c3u4gA_ 7 c3s1sA_ 8 c2kelB_ 9 d1ug2a_ 10 c1knyA_ 11 d1g64b_ 12 d1no5a_ 13 d1g5ta_ 14 c2rkbE_ 15 d1pwha_ 16 c1yy3A_ 17 d2gkea2 18 c2iifA_ 19 d1knya2 20 d1rypa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2iafa1 100.0 42 Fold:FwdE/GAPDH domain-like Superfamily:Serine metabolism enzymes domain Family:Serine dehydratase beta chain-like 2 c1ygyA_ 99.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 3 d1ygya4 99.3 19 Fold:FwdE/GAPDH domain-like Superfamily:Serine metabolism enzymes domain Family:SerA intervening domain-like 4 c2hp0A_ 98.0 14 PDB header:isomerase Chain: A: PDB Molecule:ids-epimerase; PDBTitle: crystal structure of iminodisuccinate epimerase 5 d1szqa_ 97.8 17 Fold:2-methylcitrate dehydratase PrpD Superfamily:2-methylcitrate dehydratase PrpD Family:2-methylcitrate dehydratase PrpD 6 c3u4gA_ 60.3 34 PDB header:transferase Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase; PDBTitle: the structure of cobt from pyrococcus horikoshii 7 c3s1sA_ 44.0 31 PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi 8 c2kelB_ 27.4 21 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 9 d1ug2a_ 26.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 10 c1knyA_ 26.2 22 PDB header:transferase Chain: A: PDB Molecule:kanamycin nucleotidyltransferase; PDBTitle: kanamycin nucleotidyltransferase 11 d1g64b_ 23.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 12 d1no5a_ 22.4 22 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 13 d1g5ta_ 19.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 14 c2rkbE_ 18.0 20 PDB header:lyase Chain: E: PDB Molecule:serine dehydratase-like; PDBTitle: serine dehydratase like-1 from human cancer cells 15 d1pwha_ 18.0 21 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 16 c1yy3A_ 14.5 57 PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) 17 d2gkea2 13.8 32 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 18 c2iifA_ 13.7 21 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 19 d1knya2 13.2 22 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain 20 d1rypa_ 13.1 13 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 21 d1ee8a1 not modelled 12.3 23 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 22 d1p5dx3 not modelled 12.0 23 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 23 c1u9pA_ not modelled 11.8 17 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 24 d2i7na2 not modelled 10.7 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 25 d1h72c1 not modelled 10.3 27 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 26 c2k9iB_ not modelled 10.0 25 PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus 27 c3lr6A_ not modelled 9.7 30 PDB header:structural protein Chain: A: PDB Molecule:major ampullate spidroin 1; PDBTitle: self-assembly of spider silk proteins is controlled by a ph-sensitive2 relay 28 d1jb0l_ not modelled 9.6 26 Fold:Photosystem I reaction center subunit XI, PsaL Superfamily:Photosystem I reaction center subunit XI, PsaL Family:Photosystem I reaction center subunit XI, PsaL 29 d1ncfb3 not modelled 9.6 40 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 30 c2ddhA_ not modelled 9.4 38 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate 31 c3ibqA_ not modelled 9.2 26 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 32 c2k3qA_ not modelled 9.0 22 PDB header:structural protein Chain: A: PDB Molecule:tusp1; PDBTitle: solution structure of the n-terminal domain (tusp1-n) of the2 egg case silk from nephila antipodiana 33 d1j6ua3 not modelled 9.0 33 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 34 d2nrha1 not modelled 8.8 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 35 c3sz8D_ not modelled 8.6 7 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 36 d1b65a_ not modelled 8.5 20 Fold:DmpA/ArgJ-like Superfamily:DmpA/ArgJ-like Family:DmpA-like 37 d1fi6a_ not modelled 8.4 20 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 38 d2i7pa1 not modelled 8.4 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 39 c2fonA_ not modelled 8.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal acyl-coa oxidase 1a; PDBTitle: x-ray crystal structure of leacx1, an acyl-coa oxidase from2 lycopersicon esculentum (tomato) 40 d1jswa_ not modelled 7.9 26 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 41 c1p5jA_ not modelled 7.8 16 PDB header:lyase Chain: A: PDB Molecule:l-serine dehydratase; PDBTitle: crystal structure analysis of human serine dehydratase 42 d1p5ja_ not modelled 7.8 16 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 43 c2fkkA_ not modelled 7.8 42 PDB header:viral protein Chain: A: PDB Molecule:baseplate structural protein gp10; PDBTitle: crystal structure of the c-terminal domain of the bacteriophage t42 gene product 10 44 d1h0ha2 not modelled 7.7 23 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3 45 c2reuA_ not modelled 7.6 12 PDB header:hydrolase Chain: A: PDB Molecule:type ii restriction enzyme sau3ai; PDBTitle: crystal structure of the c-terminal of sau3ai fragment 46 d1gg2g_ not modelled 7.5 42 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 47 d2raqa1 not modelled 7.5 11 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 48 c2x3dC_ not modelled 7.4 16 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 49 c3l0zC_ not modelled 7.3 13 PDB header:transferase Chain: C: PDB Molecule:putative nicotinate-nucleotide-dimethylbenzimidazole PDBTitle: crystal structure of a putative nicotinate-nucleotide-2 dimethylbenzimidazole phosphoribosyltransferase from3 methanocaldococcus jannaschii dsm 2661 50 d1omwg_ not modelled 7.1 42 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 51 c2zfdB_ not modelled 7.1 23 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 52 c2fgyA_ not modelled 7.0 14 PDB header:lyase Chain: A: PDB Molecule:carboxysome shell polypeptide; PDBTitle: beta carbonic anhydrase from the carboxysomal shell of2 halothiobacillus neapolitanus (csosca) 53 c2iirJ_ not modelled 7.0 15 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 54 c2i7pA_ not modelled 6.9 19 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 55 d1ylqa1 not modelled 6.8 16 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 56 d1k47a1 not modelled 6.8 24 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 57 d1exta3 not modelled 6.8 40 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 58 d1p3da3 not modelled 6.8 22 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 59 d1wota_ not modelled 6.6 29 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 60 c2rffA_ not modelled 6.6 16 PDB header:transferase Chain: A: PDB Molecule:putative nucleotidyltransferase; PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution 61 d3clsc1 not modelled 6.2 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 62 d1gg4a4 not modelled 6.1 26 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 63 c3eagA_ not modelled 6.1 22 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides 64 d1k61a_ not modelled 6.1 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 65 d1xhmb1 not modelled 6.1 45 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 66 c1xhmB_ not modelled 6.0 45 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein g(i)/g(s) PDBTitle: the crystal structure of a biologically active peptide2 (sigk) bound to a g protein beta:gamma heterodimer 67 c1w07A_ not modelled 6.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: arabidopsis thaliana acyl-coa oxidase 1 68 d3bpda1 not modelled 5.9 5 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 69 d2o16a3 not modelled 5.9 12 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 70 d1gotg_ not modelled 5.9 8 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 71 d1n93x_ not modelled 5.9 30 Fold:P40 nucleoprotein Superfamily:P40 nucleoprotein Family:P40 nucleoprotein 72 c1n93X_ not modelled 5.9 30 PDB header:viral protein Chain: X: PDB Molecule:p40 nucleoprotein; PDBTitle: crystal structure of the borna disease virus nucleoprotein 73 d1whqa_ not modelled 5.7 25 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 74 c2fl8N_ not modelled 5.7 56 PDB header:virus/viral protein Chain: N: PDB Molecule:baseplate structural protein gp10; PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation. 75 c2cosA_ not modelled 5.7 17 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase lats2; PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2) 76 d1huua_ not modelled 5.7 16 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 77 d2ar0a1 not modelled 5.6 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 78 c3g2bA_ not modelled 5.6 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 79 d1k82a1 not modelled 5.6 29 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 80 d1tbge_ not modelled 5.6 8 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 81 c2vg2C_ not modelled 5.5 21 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 82 d1gkma_ not modelled 5.5 16 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:HAL/PAL-like 83 d2jfga3 not modelled 5.5 29 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 84 d1d5ra2 not modelled 5.4 18 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 85 c3no9C_ not modelled 5.4 20 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase class ii; PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis 86 c2xa0A_ not modelled 5.3 26 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide 87 d1j09a1 not modelled 5.3 19 Fold:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Superfamily:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Family:C-terminal domain of glutamyl-tRNA synthetase (GluRS) 88 d2cxaa1 not modelled 5.3 11 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:LFTR-like 89 c2cxaA_ not modelled 5.3 11 PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli 90 c3ugsB_ not modelled 5.2 18 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 91 c3a24A_ not modelled 5.2 7 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of bt1871 retaining glycosidase 92 c3dwgA_ not modelled 5.2 17 PDB header:transferase Chain: A: PDB Molecule:cysteine synthase b; PDBTitle: crystal structure of a sulfur carrier protein complex found in the2 cysteine biosynthetic pathway of mycobacterium tuberculosis 93 d2r5yb1 not modelled 5.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 94 d1x2na1 not modelled 5.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 95 c2gefA_ not modelled 5.1 50 PDB header:hydrolase Chain: A: PDB Molecule:protease vp4; PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism 96 c1qoyA_ not modelled 5.0 12 PDB header:toxin Chain: A: PDB Molecule:hemolysin e; PDBTitle: e.coli hemolysin e (hlye, clya, shea) 97 d2sici_ not modelled 5.0 63 Fold:Subtilisin inhibitor Superfamily:Subtilisin inhibitor Family:Subtilisin inhibitor 98 c3a05A_ not modelled 5.0 19 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0