Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	A	G	R	L	N	K	K	S	L	G	I	V	M	L	L	S	V	G	L	L	L	A	G	C	S	G	S	K	S	S	D	T	G	T	Y	S	G	S	V	Y	T	V	K	R	G	D	T	L	Y	R	I	S	R	T	T	G	T	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	K	E	L	A	R	L	N	G	I	S	P	P	Y	T	I	E	V	G	Q	K	L	K	L	G	G	A	K	S	S	S	I	T	R	K	S	T	A	K	S	T	T	K	T	A	S	V	T	P	S	S	A	V	P	K	S	S	W	P	P
Secondary structure
SS confidence
Disorder											?		?	?	?	?	?	?						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	G	Q	R	C	W	L	W	P	T	T	G	K	V	I	M	P	Y	S	T	A	D	G	G	N	K	G	I	D	I	S	A	P	R	G	T	P	I	Y	A	A	G	A	G	K	V	V	Y	V	G	N	Q	L	R	G	Y	G	N	L	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?			?	?		?	?			?				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	I	K	H	S	E	D	Y	I	T	A	Y	A	H	N	D	T	M	L	V	N	N	G	Q	S	V	K	A	G	Q	K	I	A	T	M	G	S	T	D	A	A	S	V	R	L	H	F	Q	I	R	Y	R	A	T	A	I	D	P	L	R
Secondary structure
SS confidence
Disorder																						?	?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.
Sequence		Y	L	P	P	Q	G	S	K	P	K	C
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gu1 chain A Region: 39 - 243 Aligned: 204 Modelled: 205 Confidence: 100.0% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae Phyre2 PDB 2hsi chain B Region: 67 - 244 Aligned: 173 Modelled: 178 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium Phyre2 PDB 1qwy chain A Region: 84 - 243 Aligned: 159 Modelled: 160 Confidence: 100.0% Identity: 26% Fold: Barrel-sandwich hybrid Superfamily: Duplicated hybrid motif Family: Peptidoglycan hydrolase LytM Phyre2 PDB 3nyy chain A Region: 121 - 242 Aligned: 121 Modelled: 122 Confidence: 100.0% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution Phyre2 PDB 2b44 chain A Region: 126 - 243 Aligned: 118 Modelled: 118 Confidence: 100.0% Identity: 37% PDB header:hydrolase Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm; PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form Phyre2 PDB 3it5 chain B Region: 119 - 237 Aligned: 119 Modelled: 119 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:protease lasa; PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa Phyre2 PDB 3csq chain C Region: 144 - 238 Aligned: 91 Modelled: 95 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail Phyre2 PDB 2l9y chain A Region: 25 - 159 Aligned: 119 Modelled: 119 Confidence: 98.8% Identity: 23% PDB header:sugar binding protein Chain: A: PDB Molecule:cvnh-lysm lectin; PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307) Phyre2 PDB 2djp chain A Region: 25 - 96 Aligned: 72 Modelled: 72 Confidence: 98.6% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145 Phyre2 PDB 1e0g chain A Region: 38 - 87 Aligned: 48 Modelled: 50 Confidence: 98.3% Identity: 29% Fold: LysM domain Superfamily: LysM domain Family: LysM domain Phyre2 PDB 1y7m chain A domain 2 Region: 41 - 86 Aligned: 45 Modelled: 46 Confidence: 98.2% Identity: 31% Fold: LysM domain Superfamily: LysM domain Family: LysM domain Phyre2 PDB 1y7m chain B Region: 41 - 137 Aligned: 97 Modelled: 97 Confidence: 97.4% Identity: 23% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution Phyre2 PDB 2f3g chain A Region: 146 - 215 Aligned: 64 Modelled: 70 Confidence: 96.2% Identity: 20% Fold: Barrel-sandwich hybrid Superfamily: Duplicated hybrid motif Family: Glucose permease-like Phyre2 PDB 1gla chain F Region: 153 - 215 Aligned: 60 Modelled: 63 Confidence: 95.9% Identity: 20% Fold: Barrel-sandwich hybrid Superfamily: Duplicated hybrid motif Family: Glucose permease-like Phyre2 PDB 1gpr chain A Region: 146 - 215 Aligned: 66 Modelled: 70 Confidence: 95.7% Identity: 29% Fold: Barrel-sandwich hybrid Superfamily: Duplicated hybrid motif Family: Glucose permease-like Phyre2 PDB 2gpr chain A Region: 146 - 215 Aligned: 68 Modelled: 70 Confidence: 95.7% Identity: 24% Fold: Barrel-sandwich hybrid Superfamily: Duplicated hybrid motif Family: Glucose permease-like Phyre2 PDB 1e2w chain A domain 2 Region: 160 - 212 Aligned: 53 Modelled: 53 Confidence: 95.6% Identity: 25% Fold: Barrel-sandwich hybrid Superfamily: Rudiment single hybrid motif Family: Cytochrome f, small domain Phyre2 PDB 1ci3 chain M domain 2 Region: 160 - 212 Aligned: 52 Modelled: 53 Confidence: 95.1% Identity: 19% Fold: Barrel-sandwich hybrid Superfamily: Rudiment single hybrid motif Family: Cytochrome f, small domain Phyre2 PDB 2auk chain A Region: 150 - 228 Aligned: 79 Modelled: 79 Confidence: 94.1% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of e. coli rna polymerase beta' g/g' insert Phyre2 PDB 1e2v chain B Region: 160 - 212 Aligned: 53 Modelled: 53 Confidence: 93.8% Identity: 25% PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii Phyre2 PDB 2daf chain A Region: 223 - 249 Aligned: 27 Modelled: 27 Confidence: 54.6% Identity: 30% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flj35834 protein; PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834 Phyre2 1 c2gu1A_ 2 c2hsiB_ 3 d1qwya_ 4 c3nyyA_ 5 c2b44A_ 6 c3it5B_ 7 c3csqC_ 8 c2l9yA_ 9 c2djpA_ 10 d1e0ga_ 11 d1y7ma2 12 c1y7mB_ 13 d2f3ga_ 14 d1glaf_ 15 d1gpra_ 16 d2gpra_ 17 d1e2wa2 18 d1ci3m2 19 c2aukA_ 20 c1e2vB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 c2dafA_ 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gu1A_ 100.0 31 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 2 c2hsiB_ 100.0 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium 3 d1qwya_ 100.0 26 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Peptidoglycan hydrolase LytM 4 c3nyyA_ 100.0 25 PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution 5 c2b44A_ 100.0 37 PDB header:hydrolase Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm; PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form 6 c3it5B_ 99.9 22 PDB header:hydrolase Chain: B: PDB Molecule:protease lasa; PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa 7 c3csqC_ 99.9 19 PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail 8 c2l9yA_ 98.8 23 PDB header:sugar binding protein Chain: A: PDB Molecule:cvnh-lysm lectin; PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307) 9 c2djpA_ 98.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145 10 d1e0ga_ 98.3 29 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 11 d1y7ma2 98.2 31 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 12 c1y7mB_ 97.4 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution 13 d2f3ga_ 96.2 20 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 14 d1glaf_ 95.9 20 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 15 d1gpra_ 95.7 29 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 16 d2gpra_ 95.7 24 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 17 d1e2wa2 95.6 25 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 18 d1ci3m2 95.1 19 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 19 c2aukA_ 94.1 15 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of e. coli rna polymerase beta' g/g' insert 20 c1e2vB_ 93.8 25 PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii 21 c1ctmA_ not modelled 93.4 19 PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation 22 c1q90A_ not modelled 93.3 25 PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 23 d1dcza_ not modelled 92.7 23 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 24 c2ejgD_ not modelled 91.8 31 PDB header:ligase Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3 25 d1bdoa_ not modelled 91.3 18 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 26 c2kccA_ not modelled 90.6 18 PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of biotinoyl domain from human acetyl-2 coa carboxylase 2 27 c3n6rK_ not modelled 90.4 28 PDB header:ligase Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) 28 c2b8gA_ not modelled 90.4 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:biotin/lipoyl attachment protein; PDBTitle: solution structure of bacillus subtilis blap biotinylated-2 form (energy minimized mean structure) 29 d1hcza2 not modelled 90.3 19 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 30 c1t5eB_ not modelled 90.1 30 PDB header:transport protein Chain: B: PDB Molecule:multidrug resistance protein mexa; PDBTitle: the structure of mexa 31 c2jxmB_ not modelled 89.9 23 PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex 32 d1o78a_ not modelled 89.7 35 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 33 c3lnnB_ not modelled 89.7 26 PDB header:metal transport Chain: B: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux PDBTitle: crystal structure of zneb from cupriavidus metallidurans 34 c2aujD_ not modelled 89.4 17 PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert 35 c2f1mA_ not modelled 89.0 13 PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra 36 c1tu2B_ not modelled 88.8 26 PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures 37 c2k33A_ not modelled 88.7 26 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:acra; PDBTitle: solution structure of an n-glycosylated protein using in2 vitro glycosylation 38 c3fppB_ not modelled 88.0 26 PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca 39 d1vf7a_ not modelled 87.9 30 Fold:HlyD-like secretion proteins Superfamily:HlyD-like secretion proteins Family:HlyD-like secretion proteins 40 c2ejmA_ not modelled 87.5 30 PDB header:ligase Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha; PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase 41 c2dn8A_ not modelled 87.3 30 PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase 42 d1brwa3 not modelled 87.0 24 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 43 d1laba_ not modelled 86.9 13 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 44 d1tu2b2 not modelled 85.9 21 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 45 c2q8iB_ not modelled 85.7 13 PDB header:transferase Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol 46 c2l5tA_ not modelled 84.5 17 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase; PDBTitle: solution nmr structure of e2 lipoyl domain from thermoplasma2 acidophilum 47 d1y8ob1 not modelled 84.3 13 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 48 d1qjoa_ not modelled 83.7 26 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 49 d2pnrc1 not modelled 82.1 13 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 50 c2dncA_ not modelled 81.0 22 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component; PDBTitle: solution structure of rsgi ruh-054, a lipoyl domain from2 human 2-oxoacid dehydrogenase 51 d1ghja_ not modelled 80.8 16 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 52 c2dneA_ not modelled 80.0 17 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase 53 c3h9iB_ not modelled 78.2 17 PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli 54 c2j0fC_ not modelled 77.9 25 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 55 c1otpA_ not modelled 77.7 24 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 56 d1uoua3 not modelled 77.2 26 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 57 d1k8ma_ not modelled 76.7 9 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 58 c2dsjA_ not modelled 76.6 27 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 59 c2jkuA_ not modelled 76.1 26 PDB header:ligase Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase 60 c3fmcC_ not modelled 75.7 20 PDB header:hydrolase Chain: C: PDB Molecule:putative succinylglutamate desuccinylase / aspartoacylase; PDBTitle: crystal structure of a putative succinylglutamate desuccinylase /2 aspartoacylase family protein (sama_0604) from shewanella amazonensis3 sb2b at 1.80 a resolution 61 c2e75C_ not modelled 75.6 21 PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 62 c2qj8B_ not modelled 72.6 17 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 63 c2qf7A_ not modelled 71.9 19 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli 64 d1pmra_ not modelled 71.3 19 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 65 c3cdxB_ not modelled 70.7 21 PDB header:hydrolase Chain: B: PDB Molecule:succinylglutamatedesuccinylase/aspartoacylase; PDBTitle: crystal structure of2 succinylglutamatedesuccinylase/aspartoacylase from3 rhodobacter sphaeroides 66 d1gjxa_ not modelled 70.7 17 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 67 c3na6A_ not modelled 70.1 28 PDB header:hydrolase Chain: A: PDB Molecule:succinylglutamate desuccinylase/aspartoacylase; PDBTitle: crystal structure of a succinylglutamate desuccinylase (tm1040_2694)2 from silicibacter sp. tm1040 at 2.00 a resolution 68 d2tpta3 not modelled 70.1 21 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 69 d1mzya2 not modelled 65.8 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 70 d1iyua_ not modelled 65.8 14 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 71 c3ozxA_ not modelled 65.4 14 PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain) 72 c2xhaB_ not modelled 62.1 20 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of domain 2 of thermotoga maritima n-utilization2 substance g (nusg) 73 c2dafA_ 54.6 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flj35834 protein; PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834 74 c3h5qA_ not modelled 54.0 21 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 75 c1brwB_ not modelled 53.7 26 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 76 d1o4ua2 not modelled 49.5 16 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like 77 d1qapa2 not modelled 45.4 26 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like 78 d1k8ga2 not modelled 41.4 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 79 d1qpoa2 not modelled 39.5 26 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like 80 d1jb7a2 not modelled 39.3 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 81 c2xhcA_ not modelled 38.7 20 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 82 c3camB_ not modelled 36.3 26 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 83 c3a5dB_ not modelled 34.5 21 PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase 84 d1ndsa2 not modelled 33.0 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 85 d2ns0a1 not modelled 29.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 86 d2zjrt1 not modelled 28.3 28 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 87 d1v8qa_ not modelled 28.1 19 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 88 c3fin0_ not modelled 25.6 20 PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit. 89 c2boyC_ not modelled 25.3 24 PDB header:oxidoreductase Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase; PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp 90 d1vf5c2 not modelled 24.3 44 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 91 d1snra2 not modelled 24.2 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 92 c2elmA_ not modelled 24.0 27 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 10th c2h2 zinc finger of human2 zinc finger protein 406 93 d3pcca_ not modelled 23.5 9 Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase 94 c2kw8A_ not modelled 23.5 3 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase 95 d2awna2 not modelled 23.1 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 96 d2bura1 not modelled 22.7 18 Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase 97 d2es2a1 not modelled 22.5 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 98 c2yz2B_ not modelled 22.2 18 PDB header:hydrolase Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222; PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system 99 d2burb1 not modelled 21.6 18 Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0