08/01/2012 03:55:23 : INFO  : Run start: Sun Jan  8 03:55:22 GMT 2012
08/01/2012 03:55:26 : INFO  : Initialised job
08/01/2012 03:55:27 : INFO  : Renaming log file 'phyre2_20120108_035522.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/268d03a92a44ead4/phyre_20120108_035522.log'
08/01/2012 03:55:28 : INFO  : Initialised job:
Sequence
>batch____
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTS
VKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPP
VGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLI
MIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
YLPPQGSKPKC

08/01/2012 03:55:29 : INFO  : Checked sequence
08/01/2012 03:55:31 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 03:55:32 : INFO  : PSI-BLAST 3 iterations
08/01/2012 03:57:29 : INFO  : PSI-BLAST 5 iterations
08/01/2012 04:00:06 : INFO  : Finished PSI-BLAST
08/01/2012 04:00:07 : INFO  : Running Buildali to generate a3m file
08/01/2012 04:29:51 : INFO  : Converting to HMM
08/01/2012 04:29:55 : INFO  : Calibrating HMM
08/01/2012 04:30:07 : INFO  : Searching HMM database
08/01/2012 04:35:51 : INFO  : Finished buildali
08/01/2012 04:35:52 : INFO  : Predicting secondary structure
08/01/2012 04:35:58 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 04:35:59 : INFO  : Predicting Disordered regions
08/01/2012 04:36:02 : INFO  : Predicted Disorder (Disopred)
08/01/2012 04:36:03 : INFO  : Running memsat_svm check
08/01/2012 04:39:39 : INFO  : Running memsat_svm full
08/01/2012 04:44:15 : INFO  : Predicted Transmembrane (memsat_svm) ID '268d03a92a44ead4'
08/01/2012 04:44:17 : INFO  : Initialising fold library search
08/01/2012 04:44:19 : INFO  : Initialised search input
08/01/2012 04:44:20 : INFO  : Building Ensemble models
08/01/2012 04:44:23 : INFO  : Building hh.c2gu1A_.model.1.pdb
08/01/2012 04:44:34 : INFO  : Building hh.c2hsiB_.model.2.pdb
08/01/2012 04:44:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/268d03a92a44ead4/hh.c2hsiB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/268d03a92a44ead4/c2hsiB_.2.pdb
08/01/2012 04:44:44 : INFO  : Building hh.c2djpA_.model.3.pdb
08/01/2012 04:44:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/268d03a92a44ead4/hh.c2djpA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/268d03a92a44ead4/c2djpA_.9.pdb
08/01/2012 04:44:56 : INFO  : Building hh.c2dafA_.model.4.pdb
08/01/2012 04:45:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/268d03a92a44ead4/hh.c2dafA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/268d03a92a44ead4/c2dafA_.73.pdb
08/01/2012 04:45:07 : INFO  : Building c2gu1A_.1.pdb
08/01/2012 04:45:17 : INFO  : Building c2hsiB_.2.pdb
08/01/2012 04:45:28 : INFO  : Building d1qwya_.3.pdb
08/01/2012 04:45:38 : INFO  : Building c3nyyA_.4.pdb
08/01/2012 04:45:49 : INFO  : Building c2b44A_.5.pdb
08/01/2012 04:45:59 : INFO  : Building c3it5B_.6.pdb
08/01/2012 04:46:09 : INFO  : Building c3csqC_.7.pdb
08/01/2012 04:46:19 : INFO  : Building c2l9yA_.8.pdb
08/01/2012 04:46:29 : INFO  : Building c2djpA_.9.pdb
08/01/2012 04:46:39 : INFO  : Building d1e0ga_.10.pdb
08/01/2012 04:46:49 : INFO  : Building d1y7ma2.11.pdb
08/01/2012 04:46:59 : INFO  : Building c1y7mB_.12.pdb
08/01/2012 04:47:09 : INFO  : Building d2f3ga_.13.pdb
08/01/2012 04:47:18 : INFO  : Building d1glaf_.14.pdb
08/01/2012 04:47:28 : INFO  : Building d1gpra_.15.pdb
08/01/2012 04:47:37 : INFO  : Building d2gpra_.16.pdb
08/01/2012 04:47:47 : INFO  : Building d1e2wa2.17.pdb
08/01/2012 04:47:57 : INFO  : Building d1ci3m2.18.pdb
08/01/2012 04:48:08 : INFO  : Building c2aukA_.19.pdb
08/01/2012 04:48:17 : INFO  : Building c1e2vB_.20.pdb
08/01/2012 04:49:09 : INFO  : Finished HH model building
08/01/2012 04:49:11 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 04:49:58 : INFO  : html domain output complete ID '268d03a92a44ead4'
08/01/2012 05:10:05 : INFO  : Run end  : Sun Jan  8 05:10:05 GMT 2012
