Phyre 2 Results for Q46798

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Email | l.a.kelley@imperial.ac.uk
Description | Q46798
Date | Thu Jan 5 12:34:19 GMT 2012
Unique Job ID | 268d03a92a44ead4

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2gu1A_
Top template information
PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
Confidence and coverage
Confidence: | 100.0% | Coverage: | 81%
204 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | A | G | R | L | N | K | K | S | L | G | I | V | M | L | L | S | V | G | L | L | L | A | G | C | S | G | S | K | S | S | D | T | G | T | Y | S | G | S | V | Y | T | V | K | R | G | D | T | L | Y | R | I | S | R | T | T | G | T | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | K | E | L | A | R | L | N | G | I | S | P | P | Y | T | I | E | V | G | Q | K | L | K | L | G | G | A | K | S | S | S | I | T | R | K | S | T | A | K | S | T | T | K | T | A | S | V | T | P | S | S | A | V | P | K | S | S | W | P | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | V | G | Q | R | C | W | L | W | P | T | T | G | K | V | I | M | P | Y | S | T | A | D | G | G | N | K | G | I | D | I | S | A | P | R | G | T | P | I | Y | A | A | G | A | G | K | V | V | Y | V | G | N | Q | L | R | G | Y | G | N | L | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  | ? | ? |  | ? | ? |  |  | ? |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | M | I | K | H | S | E | D | Y | I | T | A | Y | A | H | N | D | T | M | L | V | N | N | G | Q | S | V | K | A | G | Q | K | I | A | T | M | G | S | T | D | A | A | S | V | R | L | H | F | Q | I | R | Y | R | A | T | A | I | D | P | L | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | .
Sequence |  | Y | L | P | P | Q | G | S | K | P | K | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2gu1A_ |

### PDB 2gu1 chain A

Region: 39 - 243
Aligned: 204
Modelled: 205
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae

Phyre2
2 |
| c2hsiB_ |

### PDB 2hsi chain B

Region: 67 - 244
Aligned: 173
Modelled: 178
Confidence: 100.0%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative peptidase m23;
PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium

Phyre2
3 |
| d1qwya_ |

### PDB 1qwy chain A

Region: 84 - 243
Aligned: 159
Modelled: 160
Confidence: 100.0%
Identity: 26%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Peptidoglycan hydrolase LytM

Phyre2
4 |
| c3nyyA_ |

### PDB 3nyy chain A

Region: 121 - 242
Aligned: 121
Modelled: 122
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm;
PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution

Phyre2
5 |
| c2b44A_ |

### PDB 2b44 chain A

Region: 126 - 243
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 37%
PDB header:hydrolase
Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm;
PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form

Phyre2
6 |
| c3it5B_ |

### PDB 3it5 chain B

Region: 119 - 237
Aligned: 119
Modelled: 119
Confidence: 99.9%
Identity: 22%
PDB header:hydrolase
Chain: B: PDB Molecule:protease lasa;
PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa

Phyre2
7 |
| c3csqC_ |

### PDB 3csq chain C

Region: 144 - 238
Aligned: 91
Modelled: 95
Confidence: 99.9%
Identity: 19%
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail

Phyre2
8 |
| c2l9yA_ |

### PDB 2l9y chain A

Region: 25 - 159
Aligned: 119
Modelled: 119
Confidence: 98.8%
Identity: 23%
PDB header:sugar binding protein
Chain: A: PDB Molecule:cvnh-lysm lectin;
PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307)

Phyre2
9 |
| c2djpA_ |

### PDB 2djp chain A

Region: 25 - 96
Aligned: 72
Modelled: 72
Confidence: 98.6%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein sb145;
PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145

Phyre2
10 |
| d1e0ga_ |

### PDB 1e0g chain A

Region: 38 - 87
Aligned: 48
Modelled: 50
Confidence: 98.3%
Identity: 29%
Fold: LysM domain
Superfamily: LysM domain
Family: LysM domain

Phyre2
11 |
| d1y7ma2 |

### PDB 1y7m chain A domain 2

Region: 41 - 86
Aligned: 45
Modelled: 46
Confidence: 98.2%
Identity: 31%
Fold: LysM domain
Superfamily: LysM domain
Family: LysM domain

Phyre2
12 |
| c1y7mB_ |

### PDB 1y7m chain B

Region: 41 - 137
Aligned: 97
Modelled: 97
Confidence: 97.4%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein bsu14040;
PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution

Phyre2
13 |
| d2f3ga_ |

### PDB 2f3g chain A

Region: 146 - 215
Aligned: 64
Modelled: 70
Confidence: 96.2%
Identity: 20%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2
14 |
| d1glaf_ |

### PDB 1gla chain F

Region: 153 - 215
Aligned: 60
Modelled: 63
Confidence: 95.9%
Identity: 20%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2
15 |
| d1gpra_ |

### PDB 1gpr chain A

Region: 146 - 215
Aligned: 66
Modelled: 70
Confidence: 95.7%
Identity: 29%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2
16 |
| d2gpra_ |

### PDB 2gpr chain A

Region: 146 - 215
Aligned: 68
Modelled: 70
Confidence: 95.7%
Identity: 24%
Fold: Barrel-sandwich hybrid
Superfamily: Duplicated hybrid motif
Family: Glucose permease-like

Phyre2
17 |
| d1e2wa2 |

### PDB 1e2w chain A domain 2

Region: 160 - 212
Aligned: 53
Modelled: 53
Confidence: 95.6%
Identity: 25%
Fold: Barrel-sandwich hybrid
Superfamily: Rudiment single hybrid motif
Family: Cytochrome f, small domain

Phyre2
18 |
| d1ci3m2 |

### PDB 1ci3 chain M domain 2

Region: 160 - 212
Aligned: 52
Modelled: 53
Confidence: 95.1%
Identity: 19%
Fold: Barrel-sandwich hybrid
Superfamily: Rudiment single hybrid motif
Family: Cytochrome f, small domain

Phyre2
19 |
| c2aukA_ |

### PDB 2auk chain A

Region: 150 - 228
Aligned: 79
Modelled: 79
Confidence: 94.1%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: structure of e. coli rna polymerase beta' g/g' insert

Phyre2
20 |
| c1e2vB_ |

### PDB 1e2v chain B

Region: 160 - 212
Aligned: 53
Modelled: 53
Confidence: 93.8%
Identity: 25%
PDB header:electron transport proteins
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii

Phyre2
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| c2dafA_ |

### PDB 2daf chain A

Region: 223 - 249
Aligned: 27
Modelled: 27
Confidence: 54.6%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flj35834 protein;
PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2gu1A_ |
|  | 100.0 | 31 | PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
2 | c2hsiB_ |
|  | 100.0 | 23 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium
3 | d1qwya_ |
|  | 100.0 | 26 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Peptidoglycan hydrolase LytM
4 | c3nyyA_ |
|  | 100.0 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution
5 | c2b44A_ |
|  | 100.0 | 37 | PDB header:hydrolase Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm; PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form
6 | c3it5B_ |
|  | 99.9 | 22 | PDB header:hydrolase Chain: B: PDB Molecule:protease lasa; PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa
7 | c3csqC_ |
|  | 99.9 | 19 | PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
8 | c2l9yA_ |
|  | 98.8 | 23 | PDB header:sugar binding protein Chain: A: PDB Molecule:cvnh-lysm lectin; PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307)
9 | c2djpA_ |
|  | 98.6 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145
10 | d1e0ga_ |
|  | 98.3 | 29 | Fold:LysM domain Superfamily:LysM domain Family:LysM domain
11 | d1y7ma2 |
|  | 98.2 | 31 | Fold:LysM domain Superfamily:LysM domain Family:LysM domain
12 | c1y7mB_ |
|  | 97.4 | 23 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution
13 | d2f3ga_ |
|  | 96.2 | 20 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
14 | d1glaf_ |
|  | 95.9 | 20 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
15 | d1gpra_ |
|  | 95.7 | 29 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
16 | d2gpra_ |
|  | 95.7 | 24 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
17 | d1e2wa2 |
|  | 95.6 | 25 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain
18 | d1ci3m2 |
|  | 95.1 | 19 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain
19 | c2aukA_ |
|  | 94.1 | 15 | PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of e. coli rna polymerase beta' g/g' insert
20 | c1e2vB_ |
|  | 93.8 | 25 | PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii
21 | c1ctmA_ |
| not modelled | 93.4 | 19 | PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation
22 | c1q90A_ |
| not modelled | 93.3 | 25 | PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
23 | d1dcza_ |
| not modelled | 92.7 | 23 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
24 | c2ejgD_ |
| not modelled | 91.8 | 31 | PDB header:ligase Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3
25 | d1bdoa_ |
| not modelled | 91.3 | 18 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
26 | c2kccA_ |
| not modelled | 90.6 | 18 | PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of biotinoyl domain from human acetyl-2 coa carboxylase 2
27 | c3n6rK_ |
| not modelled | 90.4 | 28 | PDB header:ligase Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
28 | c2b8gA_ |
| not modelled | 90.4 | 18 | PDB header:biosynthetic protein Chain: A: PDB Molecule:biotin/lipoyl attachment protein; PDBTitle: solution structure of bacillus subtilis blap biotinylated-2 form (energy minimized mean structure)
29 | d1hcza2 |
| not modelled | 90.3 | 19 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain
30 | c1t5eB_ |
| not modelled | 90.1 | 30 | PDB header:transport protein Chain: B: PDB Molecule:multidrug resistance protein mexa; PDBTitle: the structure of mexa
31 | c2jxmB_ |
| not modelled | 89.9 | 23 | PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
32 | d1o78a_ |
| not modelled | 89.7 | 35 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
33 | c3lnnB_ |
| not modelled | 89.7 | 26 | PDB header:metal transport Chain: B: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux PDBTitle: crystal structure of zneb from cupriavidus metallidurans
34 | c2aujD_ |
| not modelled | 89.4 | 17 | PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert
35 | c2f1mA_ |
| not modelled | 89.0 | 13 | PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra
36 | c1tu2B_ |
| not modelled | 88.8 | 26 | PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures
37 | c2k33A_ |
| not modelled | 88.7 | 26 | PDB header:membrane protein, transport protein Chain: A: PDB Molecule:acra; PDBTitle: solution structure of an n-glycosylated protein using in2 vitro glycosylation
38 | c3fppB_ |
| not modelled | 88.0 | 26 | PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca
39 | d1vf7a_ |
| not modelled | 87.9 | 30 | Fold:HlyD-like secretion proteins Superfamily:HlyD-like secretion proteins Family:HlyD-like secretion proteins
40 | c2ejmA_ |
| not modelled | 87.5 | 30 | PDB header:ligase Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha; PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase
41 | c2dn8A_ |
| not modelled | 87.3 | 30 | PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase
42 | d1brwa3 |
| not modelled | 87.0 | 24 | Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain
43 | d1laba_ |
| not modelled | 86.9 | 13 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
44 | d1tu2b2 |
| not modelled | 85.9 | 21 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain
45 | c2q8iB_ |
| not modelled | 85.7 | 13 | PDB header:transferase Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol
46 | c2l5tA_ |
| not modelled | 84.5 | 17 | PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase; PDBTitle: solution nmr structure of e2 lipoyl domain from thermoplasma2 acidophilum
47 | d1y8ob1 |
| not modelled | 84.3 | 13 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
48 | d1qjoa_ |
| not modelled | 83.7 | 26 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
49 | d2pnrc1 |
| not modelled | 82.1 | 13 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
50 | c2dncA_ |
| not modelled | 81.0 | 22 | PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component; PDBTitle: solution structure of rsgi ruh-054, a lipoyl domain from2 human 2-oxoacid dehydrogenase
51 | d1ghja_ |
| not modelled | 80.8 | 16 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
52 | c2dneA_ |
| not modelled | 80.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase
53 | c3h9iB_ |
| not modelled | 78.2 | 17 | PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli
54 | c2j0fC_ |
| not modelled | 77.9 | 25 | PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
55 | c1otpA_ |
| not modelled | 77.7 | 24 | PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
56 | d1uoua3 |
| not modelled | 77.2 | 26 | Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain
57 | d1k8ma_ |
| not modelled | 76.7 | 9 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
58 | c2dsjA_ |
| not modelled | 76.6 | 27 | PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
59 | c2jkuA_ |
| not modelled | 76.1 | 26 | PDB header:ligase Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase
60 | c3fmcC_ |
| not modelled | 75.7 | 20 | PDB header:hydrolase Chain: C: PDB Molecule:putative succinylglutamate desuccinylase / aspartoacylase; PDBTitle: crystal structure of a putative succinylglutamate desuccinylase /2 aspartoacylase family protein (sama_0604) from shewanella amazonensis3 sb2b at 1.80 a resolution
61 | c2e75C_ |
| not modelled | 75.6 | 21 | PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
62 | c2qj8B_ |
| not modelled | 72.6 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution
63 | c2qf7A_ |
| not modelled | 71.9 | 19 | PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli
64 | d1pmra_ |
| not modelled | 71.3 | 19 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
65 | c3cdxB_ |
| not modelled | 70.7 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:succinylglutamatedesuccinylase/aspartoacylase; PDBTitle: crystal structure of2 succinylglutamatedesuccinylase/aspartoacylase from3 rhodobacter sphaeroides
66 | d1gjxa_ |
| not modelled | 70.7 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
67 | c3na6A_ |
| not modelled | 70.1 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:succinylglutamate desuccinylase/aspartoacylase; PDBTitle: crystal structure of a succinylglutamate desuccinylase (tm1040_2694)2 from silicibacter sp. tm1040 at 2.00 a resolution
68 | d2tpta3 |
| not modelled | 70.1 | 21 | Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain
69 | d1mzya2 |
| not modelled | 65.8 | 11 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
70 | d1iyua_ |
| not modelled | 65.8 | 14 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
71 | c3ozxA_ |
| not modelled | 65.4 | 14 | PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
72 | c2xhaB_ |
| not modelled | 62.1 | 20 | PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of domain 2 of thermotoga maritima n-utilization2 substance g (nusg)
73 | c2dafA_ |
|  | 54.6 | 30 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flj35834 protein; PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834
74 | c3h5qA_ |
| not modelled | 54.0 | 21 | PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
75 | c1brwB_ |
| not modelled | 53.7 | 26 | PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation
76 | d1o4ua2 |
| not modelled | 49.5 | 16 | Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like
77 | d1qapa2 |
| not modelled | 45.4 | 26 | Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like
78 | d1k8ga2 |
| not modelled | 41.4 | 19 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB
79 | d1qpoa2 |
| not modelled | 39.5 | 26 | Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like
80 | d1jb7a2 |
| not modelled | 39.3 | 19 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB
81 | c2xhcA_ |
| not modelled | 38.7 | 20 | PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg)
82 | c3camB_ |
| not modelled | 36.3 | 26 | PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis
83 | c3a5dB_ |
| not modelled | 34.5 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
84 | d1ndsa2 |
| not modelled | 33.0 | 17 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
85 | d2ns0a1 |
| not modelled | 29.9 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like
86 | d2zjrt1 |
| not modelled | 28.3 | 28 | Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein
87 | d1v8qa_ |
| not modelled | 28.1 | 19 | Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein
88 | c3fin0_ |
| not modelled | 25.6 | 20 | PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit.
89 | c2boyC_ |
| not modelled | 25.3 | 24 | PDB header:oxidoreductase Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase; PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp
90 | d1vf5c2 |
| not modelled | 24.3 | 44 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain
91 | d1snra2 |
| not modelled | 24.2 | 16 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
92 | c2elmA_ |
| not modelled | 24.0 | 27 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 10th c2h2 zinc finger of human2 zinc finger protein 406
93 | d3pcca_ |
| not modelled | 23.5 | 9 | Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase
94 | c2kw8A_ |
| not modelled | 23.5 | 3 | PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase
95 | d2awna2 |
| not modelled | 23.1 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
96 | d2bura1 |
| not modelled | 22.7 | 18 | Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase
97 | d2es2a1 |
| not modelled | 22.5 | 28 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
98 | c2yz2B_ |
| not modelled | 22.2 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222; PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
99 | d2burb1 |
| not modelled | 21.6 | 18 | Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0