Phyre 2 alignment of Q46798 with c3camB_

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Job Description | Q46798
Confidence | 36.32% | Date | Thu Jan 5 12:34:19 GMT 2012
Rank | 82 | Aligned Residues | 42
% Identity | 26% | Template | c3camB_
PDB info | PDB header:gene regulation | Chain: B: PDB Molecule:cold-shock domain family protein; | PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis
Resolution | 2.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | 200 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Query Sequence |  | G | A | G | K | V | V | Y | V | G | N | Q | L | R | G | Y | G | N | L | I | M | I | K | H | S | E | D | Y | I | T | A | Y | A | H | N | D | T | M | L | . | . | . | . | . | . | V | N | N | G | Q | S | V | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | T | G | I | V | K | W | F | . | N | D | A | K | G | F | G | F | I | T | P | . | . | . | D | E | G | G | E | D | L | F | A | H | F | S | A | I | N | X | E | G | F | K | T | L | K | E | G | Q | R | V | S
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | . |  | T | T | T | T |  |  |  |  |  |  | . | . | . | S | S | S |  |  |  |  |  |  |  | G | G | G |  |  | G | G | G | G | S | S |  |  | T | T |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2 | . | . | . | . | . | . | . |  | 10 | . | . | . | . | . | . | . | . | . | 20 |  |  |  | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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