Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	A	K	K	I	G	L	F	A	C	T	G	V	V	A	G	N	M	M	G	S	G	I	A	L	L	P	A	N	L	A	S	I	G	G	I	A	I	W	G	W	I	I	S	I	I	G	A	M	S	L	A	Y	V	Y	A	R	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	K	N	P	Q	Q	G	G	P	I	A	Y	A	G	E	I	S	P	A	F	G	F	Q	T	G	V	L	Y	Y	H	A	N	W	I	G	N	L	A	I	G	I	T	A	V	S	Y	L	S	T	F	F	P	V	L	N	D	P	V	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	G	I	A	C	I	A	I	V	W	V	F	T	F	V	N	M	L	G	G	T	W	V	S	R	L	T	T	I	G	L	V	L	V	L	I	P	V	V	M	T	A	I	V	G	W	H	W	F	D	A	A	T	Y	A	A	N	W	N	T
Secondary structure
SS confidence
Disorder																																																						?			?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	D	T	T	D	G	H	A	I	I	K	S	I	L	L	C	L	W	A	F	V	G	V	E	S	A	A	V	S	T	G	M	V	K	N	P	K	R	T	V	P	L	A	T	M	L	G	T	G	L	A	G	I	V	Y	I	A	A	T	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	L	S	G	M	Y	P	S	S	V	M	A	A	S	G	A	P	F	A	I	S	A	S	T	I	L	G	N	W	A	A	P	L	V	S	A	F	T	A	F	A	C	L	T	S	L	G	S	W	M	M	L	V	G	Q	A	G	V	R	A
Secondary structure
SS confidence
Disorder												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	N	D	G	N	F	P	K	V	Y	G	E	V	D	S	N	G	I	P	K	K	G	L	L	L	A	A	V	K	M	T	A	L	M	I	L	I	T	L	M	N	S	A	G	G	K	A	S	D	L	F	G	E	L	T	G	I	A	V	L
Secondary structure
SS confidence
Disorder																																										?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	T	M	L	P	Y	F	Y	S	C	V	D	L	I	R	F	E	G	V	N	I	R	N	F	V	S	L	I	C	S	V	L	G	C	V	F	C	F	I	A	L	M	G	A	S	S	F	E	L	A	G	T	F	I	V	S	L	I	I	L
Secondary structure
SS confidence
Disorder																				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Sequence		M	F	Y	A	R	K	M	H	E	R	Q	S	H	S	M	D	N	H	T	A	S	N	A	H
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gia chain A Region: 3 - 441 Aligned: 428 Modelled: 428 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Phyre2 PDB 3lrc chain C Region: 3 - 434 Aligned: 407 Modelled: 407 Confidence: 100.0% Identity: 40% PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Phyre2 PDB 2jln chain A Region: 1 - 444 Aligned: 433 Modelled: 433 Confidence: 99.9% Identity: 10% PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Phyre2 PDB 3dh4 chain A Region: 5 - 444 Aligned: 433 Modelled: 433 Confidence: 99.2% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Phyre2 PDB 2xq2 chain A Region: 5 - 443 Aligned: 432 Modelled: 432 Confidence: 99.1% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Phyre2 PDB 2a65 chain A domain 1 Region: 8 - 433 Aligned: 412 Modelled: 412 Confidence: 95.8% Identity: 19% Fold: SNF-like Superfamily: SNF-like Family: SNF-like Phyre2 PDB 2w8a chain C Region: 2 - 383 Aligned: 370 Modelled: 382 Confidence: 91.4% Identity: 13% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Phyre2 PDB 3rko chain F Region: 316 - 432 Aligned: 117 Modelled: 117 Confidence: 60.5% Identity: 11% PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3hfx chain A Region: 29 - 379 Aligned: 337 Modelled: 337 Confidence: 50.9% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Phyre2 PDB 1eys chain H domain 2 Region: 406 - 437 Aligned: 32 Modelled: 32 Confidence: 36.2% Identity: 19% Fold: Single transmembrane helix Superfamily: Photosystem II reaction centre subunit H, transmembrane region Family: Photosystem II reaction centre subunit H, transmembrane region Phyre2 PDB 2rdd chain B Region: 405 - 437 Aligned: 33 Modelled: 33 Confidence: 22.4% Identity: 15% PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. Phyre2 PDB 2klu chain A Region: 409 - 434 Aligned: 26 Modelled: 26 Confidence: 20.0% Identity: 23% PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 Phyre2 PDB 3b9y chain A Region: 297 - 437 Aligned: 139 Modelled: 141 Confidence: 17.6% Identity: 4% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Phyre2 PDB 1pw4 chain A Region: 94 - 437 Aligned: 344 Modelled: 344 Confidence: 17.4% Identity: 11% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 2l2t chain A Region: 400 - 434 Aligned: 35 Modelled: 35 Confidence: 17.4% Identity: 11% PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain Phyre2 PDB 1fft chain B domain 2 Region: 400 - 442 Aligned: 43 Modelled: 43 Confidence: 14.9% Identity: 9% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 2yiu chain E Region: 408 - 433 Aligned: 26 Modelled: 26 Confidence: 13.8% Identity: 15% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution Phyre2 PDB 2k21 chain A Region: 402 - 436 Aligned: 35 Modelled: 35 Confidence: 13.8% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c Phyre2 PDB 2knc chain A Region: 408 - 442 Aligned: 35 Modelled: 35 Confidence: 13.8% Identity: 11% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 1p84 chain D Region: 408 - 434 Aligned: 27 Modelled: 27 Confidence: 13.3% Identity: 15% PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 1 c3giaA_ 2 c3lrcC_ 3 c2jlnA_ 4 c3dh4A_ 5 c2xq2A_ 6 d2a65a1 7 c2w8aC_ 8 c3rkoF_ 9 c3hfxA_ 10 d1eysh2 11 c2rddB_ 12 c2kluA_ 13 c3b9yA_ 14 d1pw4a_ 15 c2l2tA_ 16 d1fftb2 17 c2yiuE_ 18 c2k21A_ 19 c2kncA_ 20 c1p84D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3giaA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 2 c3lrcC_ 100.0 40 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 3 c2jlnA_ 99.9 10 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 4 c3dh4A_ 99.2 10 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 5 c2xq2A_ 99.1 11 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 6 d2a65a1 95.8 19 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 7 c2w8aC_ 91.4 13 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 8 c3rkoF_ 60.5 11 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 9 c3hfxA_ 50.9 10 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 10 d1eysh2 36.2 19 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 11 c2rddB_ 22.4 15 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 12 c2kluA_ 20.0 23 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 13 c3b9yA_ 17.6 4 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 14 d1pw4a_ 17.4 11 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 15 c2l2tA_ 17.4 11 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 16 d1fftb2 14.9 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 17 c2yiuE_ 13.8 15 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 18 c2k21A_ 13.8 14 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 19 c2kncA_ 13.8 11 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 20 c1p84D_ 13.3 15 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 21 c2fynH_ not modelled 13.2 19 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 22 c1zrtD_ not modelled 12.4 11 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 23 d3ehbb2 not modelled 12.0 11 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 24 c3cwbQ_ not modelled 11.6 13 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 25 c2w2hD_ not modelled 11.2 11 PDB header:rna-binding protein Chain: D: PDB Molecule:protein tat; PDBTitle: structural basis of transcription activation by the cyclin2 t1-tat-tar rna complex from eiav 26 d3dtub2 not modelled 11.1 16 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 27 c2jo1A_ not modelled 10.5 14 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 28 c2zkry_ not modelled 10.4 27 PDB header:ribosomal protein/rna Chain: Y: PDB Molecule:5s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 29 d2fq3a1 not modelled 9.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 30 c3qnqD_ not modelled 9.7 11 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 31 c2jp3A_ not modelled 9.7 14 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 32 d2auwa1 not modelled 9.6 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 33 c1tz5A_ not modelled 9.4 21 PDB header:hormone/growth factor Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y; PDBTitle: [pnpy19-23]-hpp bound to dpc micelles 34 c2ks1B_ not modelled 9.3 13 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 35 d1lmma_ not modelled 9.2 33 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 36 c1ronA_ not modelled 9.2 7 PDB header:neuropeptide Chain: A: PDB Molecule:neuropeptide y; PDBTitle: nmr solution structure of human neuropeptide y 37 c2kncB_ not modelled 9.1 26 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 38 c2dezA_ not modelled 9.0 0 PDB header:neuropeptide Chain: A: PDB Molecule:peptide yy; PDBTitle: structure of human pyy 39 c1d6uB_ not modelled 9.0 29 PDB header:oxidoreductase Chain: B: PDB Molecule:copper amine oxidase; PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine 40 c2bf9A_ not modelled 8.9 7 PDB header:hormone Chain: A: PDB Molecule:pancreatic hormone; PDBTitle: anisotropic refinement of avian (turkey) pancreatic2 polypeptide at 0.99 angstroms resolution. 41 c3njcA_ not modelled 8.8 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yslb protein; PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460. 42 c1ujlA_ not modelled 8.7 24 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 43 d1qbjc_ not modelled 8.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 44 d1qgpa_ not modelled 8.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 45 c2cpbA_ not modelled 8.4 24 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 46 d2e74g1 not modelled 8.3 20 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 47 d2gxba1 not modelled 8.2 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 48 c2b9sB_ not modelled 8.0 15 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 49 d1ez3a_ not modelled 7.8 15 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 50 c2auwB_ not modelled 7.7 12 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 51 d1v54i_ not modelled 7.4 28 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIc Family:Mitochondrial cytochrome c oxidase subunit VIc 52 d1zela1 not modelled 7.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rv2827c N-terminal domain-like 53 d2iuba2 not modelled 7.3 5 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 54 c2k1aA_ not modelled 7.2 6 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 55 c2zfdB_ not modelled 7.1 14 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 56 c3o2pE_ not modelled 7.1 5 PDB header:ligase, cell cycle Chain: E: PDB Molecule:cell division control protein 53; PDBTitle: a dual e3 mechanism for rub1 ligation to cdc53: dcn1(p)-cdc53(whb) 57 d1rh5a_ not modelled 7.0 11 Fold:Preprotein translocase SecY subunit Superfamily:Preprotein translocase SecY subunit Family:Preprotein translocase SecY subunit 58 c1fftG_ not modelled 7.0 11 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 59 d2r6gf1 not modelled 6.9 15 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 60 c1tvtA_ not modelled 6.9 11 PDB header:transcription regulation Chain: A: PDB Molecule:transactivator protein; PDBTitle: structure of the equine infectious anemia virus tat protein 61 c3ixsF_ not modelled 6.9 20 PDB header:protein binding Chain: F: PDB Molecule:ring1 and yy1-binding protein; PDBTitle: ring1b c-terminal domain/rybp c-terminal domain complex 62 c1v55B_ not modelled 6.8 5 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 63 c3rkoK_ not modelled 6.8 15 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 64 d1joya_ not modelled 6.8 15 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 65 d1co4a_ not modelled 6.8 18 Fold:Zinc domain conserved in yeast copper-regulated transcription factors Superfamily:Zinc domain conserved in yeast copper-regulated transcription factors Family:Zinc domain conserved in yeast copper-regulated transcription factors 66 d2h8pc1 not modelled 6.7 17 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 67 d1iwga7 not modelled 6.7 12 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 68 d1k18a_ not modelled 6.6 7 Fold:Zinc finger domain of DNA polymerase-alpha Superfamily:Zinc finger domain of DNA polymerase-alpha Family:Zinc finger domain of DNA polymerase-alpha 69 d1j75a_ not modelled 6.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 70 c1u7mB_ not modelled 6.5 18 PDB header:de novo protein Chain: B: PDB Molecule:four-helix bundle model; PDBTitle: solution structure of a diiron protein model: due ferri(ii)2 turn mutant 71 c3jsrA_ not modelled 6.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:all0216 protein; PDBTitle: x-ray structure of all0216 protein from nostoc sp. pcc 7120 at the2 resolution 1.8a. northeast structural genomics consortium target3 nsr236 72 c3iz5h_ not modelled 6.5 22 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 73 c1vf5G_ not modelled 6.4 20 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 74 d1vf5g_ not modelled 6.4 20 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 75 c3izbO_ not modelled 6.4 29 PDB header:ribosome Chain: O: PDB Molecule:40s ribosomal protein rps13 (s15p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 76 c2wj8N_ not modelled 6.3 29 PDB header:rna binding protein/rna Chain: N: PDB Molecule:nucleoprotein; PDBTitle: respiratory syncitial virus ribonucleoprotein 77 c3zquA_ not modelled 6.3 43 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 78 c2rq2A_ not modelled 6.2 24 PDB header:antibiotic Chain: A: PDB Molecule:big defensin; PDBTitle: the solution structure of the n-terminal fragment of big2 defensin 79 d2axti1 not modelled 6.1 21 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 80 c2o5gB_ not modelled 6.0 18 PDB header:metal binding protein Chain: B: PDB Molecule:smooth muscle myosin light chain kinase peptide; PDBTitle: calmodulin-smooth muscle light chain kinase peptide complex 81 d1ldja1 not modelled 6.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 82 c4a1bB_ not modelled 6.0 14 PDB header:ribosome Chain: B: PDB Molecule:rpl39; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3. 83 d1iuya_ not modelled 6.0 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 84 d2b8ta2 not modelled 5.9 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 85 c2zkr3_ not modelled 5.9 11 PDB header:ribosomal protein/rna Chain: 3: PDB Molecule:60s ribosomal protein l39e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 86 c2wwaA_ not modelled 5.9 10 PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 87 d1fcla_ not modelled 5.9 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 88 c3rj1P_ not modelled 5.9 9 PDB header:transcription Chain: P: PDB Molecule:mediator of rna polymerase ii transcription subunit 17; PDBTitle: architecture of the mediator head module 89 d3cx5d2 not modelled 5.9 12 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 90 c2eqrA_ not modelled 5.9 14 PDB header:transcription Chain: A: PDB Molecule:nuclear receptor corepressor 1; PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1 91 d1qzua_ not modelled 5.8 14 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 92 c2xznZ_ not modelled 5.8 15 PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 93 d2bcgg3 not modelled 5.7 15 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GDI-like 94 d1mvka_ not modelled 5.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 95 c3p5nA_ not modelled 5.7 15 PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter 96 c3ndhA_ not modelled 5.7 8 PDB header:hydrolase/dna Chain: A: PDB Molecule:restriction endonuclease thai; PDBTitle: restriction endonuclease in complex with substrate dna 97 c1m57H_ not modelled 5.7 11 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 98 c2l9uA_ not modelled 5.7 16 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 99 c1w8xP_ not modelled 5.7 10 PDB header:virus Chain: P: PDB Molecule:protein p16; PDBTitle: structural analysis of prd1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0