Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	K	R	K	I	I	L	D	C	D	P	G	H	D	D	A	I	A	I	M	M	A	A	K	H	P	A	I	D	L	L	G	I	T	I	V	A	G	N	Q	T	L	D	K	T	L	I	N	G	L	N	V	C	Q	K	L	E	I	N
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	P	V	Y	A	G	M	P	Q	P	I	M	R	Q	Q	I	V	A	D	N	I	H	G	E	T	G	L	D	G	P	V	F	E	P	L	T	R	Q	A	E	S	T	H	A	V	K	Y	I	I	D	T	L	M	A	S	D	G	D	I	T
Secondary structure
SS confidence
Disorder																																						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	V	P	V	G	P	L	S	N	I	A	V	A	M	R	M	Q	P	A	I	L	P	K	I	R	E	I	V	L	M	G	G	A	Y	G	T	G	N	F	T	P	S	A	E	F	N	I	F	A	D	P	E	A	A	R	V	V	F	T	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	V	P	L	V	M	M	G	L	D	L	T	N	Q	T	V	C	T	P	D	V	I	A	R	M	E	R	A	G	G	P	A	G	E	L	F	S	D	I	M	N	F	T	L	K	T	Q	F	E	N	Y	G	L	A	G	G	P	V	H	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	T	C	I	G	Y	L	I	N	P	D	G	I	K	T	Q	E	M	Y	V	E	V	D	V	N	S	G	P	C	Y	G	R	T	V	C	D	E	L	G	V	L	G	K	P	A	N	T	K	V	G	I	T	I	D	T	D	W	F	W	G
Secondary structure
SS confidence
Disorder																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.
Sequence		L	V	E	E	C	V	R	G	Y	I	K	T	H
Secondary structure
SS confidence
Disorder												?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3b9x chain A Region: 3 - 311 Aligned: 309 Modelled: 309 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase rihb; PDBTitle: crystal structure of the e. coli pyrimidine nucleoside hydrolase yeik2 in complex with inosine Phyre2 PDB 1q8f chain A Region: 3 - 310 Aligned: 308 Modelled: 308 Confidence: 100.0% Identity: 100% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 2mas chain A Region: 4 - 311 Aligned: 308 Modelled: 308 Confidence: 100.0% Identity: 39% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 1ezr chain A Region: 3 - 311 Aligned: 308 Modelled: 309 Confidence: 100.0% Identity: 41% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 1yoe chain A Region: 2 - 310 Aligned: 300 Modelled: 309 Confidence: 100.0% Identity: 39% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose Phyre2 PDB 3fz0 chain C Region: 3 - 307 Aligned: 300 Modelled: 305 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: C: PDB Molecule:nucleoside hydrolase, putative; PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh) Phyre2 PDB 2c40 chain B Region: 4 - 309 Aligned: 290 Modelled: 305 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution Phyre2 PDB 1kic chain A Region: 2 - 308 Aligned: 294 Modelled: 307 Confidence: 100.0% Identity: 21% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 2yhg chain A Region: 3 - 151 Aligned: 138 Modelled: 138 Confidence: 99.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:cellulose-binding protein; PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism Phyre2 PDB 1gpm chain A domain 1 Region: 4 - 63 Aligned: 60 Modelled: 60 Confidence: 81.5% Identity: 17% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: N-type ATP pyrophosphatases Phyre2 PDB 2dpl chain A Region: 3 - 64 Aligned: 62 Modelled: 62 Confidence: 65.5% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 Phyre2 PDB 3tqi chain B Region: 3 - 63 Aligned: 61 Modelled: 61 Confidence: 51.6% Identity: 18% PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii Phyre2 PDB 2hma chain A Region: 2 - 64 Aligned: 62 Modelled: 63 Confidence: 42.6% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae Phyre2 PDB 1f74 chain A Region: 8 - 148 Aligned: 140 Modelled: 141 Confidence: 39.4% Identity: 10% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 3fiu chain D Region: 1 - 63 Aligned: 61 Modelled: 63 Confidence: 39.0% Identity: 16% PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis Phyre2 PDB 1o5z chain A domain 2 Region: 11 - 68 Aligned: 55 Modelled: 55 Confidence: 37.7% Identity: 15% Fold: Ribokinase-like Superfamily: MurD-like peptide ligases, catalytic domain Family: Folylpolyglutamate synthetase Phyre2 PDB 3uow chain B Region: 2 - 64 Aligned: 62 Modelled: 63 Confidence: 32.9% Identity: 16% PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum Phyre2 PDB 2der chain A Region: 4 - 64 Aligned: 60 Modelled: 61 Confidence: 31.3% Identity: 20% PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state Phyre2 PDB 1ccw chain A Region: 1 - 66 Aligned: 65 Modelled: 66 Confidence: 30.1% Identity: 25% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 1gpm chain D Region: 3 - 63 Aligned: 61 Modelled: 61 Confidence: 25.8% Identity: 16% PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate Phyre2 1 c3b9xA_ 2 d1q8fa_ 3 d2masa_ 4 d1ezra_ 5 c1yoeA_ 6 c3fz0C_ 7 c2c40B_ 8 d1kica_ 9 c2yhgA_ 10 d1gpma1 11 c2dplA_ 12 c3tqiB_ 13 c2hmaA_ 14 d1f74a_ 15 c3fiuD_ 16 d1o5za2 17 c3uowB_ 18 c2derA_ 19 d1ccwa_ 20 c1gpmD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3b9xA_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase rihb; PDBTitle: crystal structure of the e. coli pyrimidine nucleoside hydrolase yeik2 in complex with inosine 2 d1q8fa_ 100.0 100 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 3 d2masa_ 100.0 39 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 4 d1ezra_ 100.0 41 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 5 c1yoeA_ 100.0 39 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose 6 c3fz0C_ 100.0 28 PDB header:hydrolase Chain: C: PDB Molecule:nucleoside hydrolase, putative; PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh) 7 c2c40B_ 100.0 21 PDB header:hydrolase Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution 8 d1kica_ 100.0 21 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 9 c2yhgA_ 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:cellulose-binding protein; PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism 10 d1gpma1 81.5 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 11 c2dplA_ 65.5 16 PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 12 c3tqiB_ 51.6 18 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 13 c2hmaA_ 42.6 15 PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae 14 d1f74a_ 39.4 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 15 c3fiuD_ 39.0 16 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 16 d1o5za2 37.7 15 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase 17 c3uowB_ 32.9 16 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 18 c2derA_ 31.3 20 PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state 19 d1ccwa_ 30.1 25 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 20 c1gpmD_ 25.8 16 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 21 c3p52B_ not modelled 23.7 15 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion 22 d2c5sa1 not modelled 22.4 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 23 c2zyiB_ not modelled 19.0 24 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 24 d2ocda1 not modelled 18.8 16 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 25 c3bl5E_ not modelled 18.4 17 PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis 26 d2b3ya2 not modelled 18.1 17 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 27 d3bula2 not modelled 17.7 20 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 28 c3dlaD_ not modelled 17.5 19 PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don 29 d1nnsa_ not modelled 16.0 15 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 30 d1e0ta3 not modelled 15.9 16 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 31 d1xnga1 not modelled 15.2 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 32 d7reqa2 not modelled 13.9 12 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 33 c2ehhE_ not modelled 13.7 12 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 34 c3si9B_ not modelled 13.5 14 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae 35 d2gc6a2 not modelled 13.3 15 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase 36 c2yxgD_ not modelled 12.9 13 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 37 d1vbka1 not modelled 12.7 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 38 c2vosA_ not modelled 12.4 15 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase protein folc; PDBTitle: mycobacterium tuberculosis folylpolyglutamate synthase2 complexed with adp 39 c3cseA_ not modelled 12.1 27 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: candida glabrata dihydrofolate reductase complexed with2 nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-3 ynyl)-6-ethylpyrimidine (ucp120b) 40 d1tcaa_ not modelled 11.6 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 41 c3r79B_ not modelled 11.6 8 PDB header:structure genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharactertized protein from agrobacterium2 tumefaciens 42 c2eapA_ not modelled 10.7 27 PDB header:signaling protein Chain: A: PDB Molecule:lymphocyte cytosolic protein 2; PDBTitle: solution structure of the n-terminal sam-domain of human2 lymphocyte cytosolic protein 2 43 d1o94c_ not modelled 10.2 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 44 d1lw7a1 not modelled 9.7 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 45 c2ywcC_ not modelled 9.1 20 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 46 d2vk9a1 not modelled 8.9 20 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycosylating toxin catalytic domain-like 47 d1kqpa_ not modelled 8.9 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 48 c1xtyD_ not modelled 8.9 45 PDB header:hydrolase Chain: D: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase 49 d4pgaa_ not modelled 8.6 27 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 50 c2d3kA_ not modelled 8.4 45 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3 51 c1w78A_ not modelled 8.1 16 PDB header:synthase Chain: A: PDB Molecule:folc bifunctional protein; PDBTitle: e.coli folc in complex with dhpp and adp 52 d3cx5a2 not modelled 8.1 23 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 53 c2zv3E_ not modelled 8.1 45 PDB header:hydrolase Chain: E: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661 54 c3rg9A_ not modelled 8.0 22 PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase; PDBTitle: trypanosoma brucei dihydrofolate reductase (tbdhfr) in complex with2 wr99210 55 d2pg3a1 not modelled 7.6 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 56 c3bjqA_ not modelled 7.4 12 PDB header:viral protein Chain: A: PDB Molecule:phage-related protein; PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution 57 d1q7sa_ not modelled 7.4 36 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 58 d1agxa_ not modelled 7.3 15 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 59 d2nu7b1 not modelled 7.1 17 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 60 d3erja1 not modelled 7.0 55 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 61 c3sz8D_ not modelled 7.0 7 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 62 c1wnfA_ not modelled 7.0 19 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 63 c1bmtB_ not modelled 7.0 20 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 64 c2dy3B_ not modelled 6.9 22 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum 65 c2nu9E_ not modelled 6.5 17 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 66 d1rlka_ not modelled 6.5 45 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 67 d1xcra1 not modelled 6.3 25 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:PTD012-like 68 c1k98A_ not modelled 6.3 22 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 69 d1liua3 not modelled 6.1 15 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 70 d1ik6a2 not modelled 6.0 25 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 71 d2bvla1 not modelled 5.9 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycosylating toxin catalytic domain-like 72 d1o7ja_ not modelled 5.9 12 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 73 c2vxoB_ not modelled 5.9 17 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 74 c3lciA_ not modelled 5.6 14 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 75 d1kmva_ not modelled 5.3 26 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 76 c3llxA_ not modelled 5.3 19 PDB header:isomerase Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution 77 d1ru8a_ not modelled 5.3 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 78 c2e18B_ not modelled 5.2 14 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of project ph0182 from pyrococcus horikoshii ot3 79 d1qf5a_ not modelled 5.2 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0