Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	T	E	F	Y	A	D	L	N	R	D	F	N	A	L	M	A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	G	K	I	A	C	V	R	I	P	V	G	R	G	V	C	G	T	A	V	A	R	N	Q	V	Q	R	I	E	D	V	H	V	F	D	G	H	I	A	C	D	A	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Sequence		V	L	D	I	D	S	T	V	F	G	R	F	T	D	E	D	E	Q	G	L	R	Q	L	V	A	Q	L	E	K	V	L	A	T	T	D	Y	K	K	F	F	A	S	V	A	G
Secondary structure
SS confidence
Disorder											?	?	?																															?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vhm chain B Region: 1 - 160 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 100% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein yebr; PDBTitle: crystal structure of an hypothetical protein Phyre2 PDB 1vhm chain A Region: 2 - 160 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 100% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3ksi chain A Region: 3 - 151 Aligned: 149 Modelled: 149 Confidence: 100.0% Identity: 51% PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) Phyre2 PDB 3mmh chain A Region: 2 - 155 Aligned: 153 Modelled: 154 Confidence: 99.9% Identity: 43% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate Phyre2 PDB 1f5m chain A Region: 1 - 151 Aligned: 151 Modelled: 151 Confidence: 99.9% Identity: 40% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3p01 chain C Region: 1 - 154 Aligned: 153 Modelled: 154 Confidence: 99.9% Identity: 16% PDB header:signaling protein Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 Phyre2 PDB 2o9c chain A domain 1 Region: 8 - 155 Aligned: 147 Modelled: 148 Confidence: 99.8% Identity: 12% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3p01 chain A Region: 1 - 154 Aligned: 153 Modelled: 154 Confidence: 99.8% Identity: 15% PDB header:signaling protein Chain: A: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 Phyre2 PDB 1mc0 chain A Region: 3 - 163 Aligned: 160 Modelled: 161 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a; PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains Phyre2 PDB 3o5y chain A Region: 22 - 155 Aligned: 133 Modelled: 133 Confidence: 99.8% Identity: 22% PDB header:transcription regulator Chain: A: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a Phyre2 PDB 3trc chain A Region: 2 - 156 Aligned: 154 Modelled: 155 Confidence: 99.8% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii Phyre2 PDB 2vea chain A domain 1 Region: 11 - 160 Aligned: 149 Modelled: 149 Confidence: 99.8% Identity: 8% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3ci6 chain B Region: 9 - 156 Aligned: 147 Modelled: 148 Confidence: 99.8% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase Phyre2 PDB 2zmf chain A Region: 3 - 160 Aligned: 157 Modelled: 158 Confidence: 99.8% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase PDBTitle: crystal structure of the c-terminal gaf domain of human2 phosphodiesterase 10a Phyre2 PDB 3k2n chain B Region: 5 - 163 Aligned: 158 Modelled: 159 Confidence: 99.8% Identity: 9% PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls Phyre2 PDB 3mf0 chain A Region: 2 - 165 Aligned: 161 Modelled: 164 Confidence: 99.8% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: crystal structure of pde5a gaf domain (89-518) Phyre2 PDB 3eea chain B Region: 19 - 156 Aligned: 137 Modelled: 138 Confidence: 99.8% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:gaf domain/hd domain protein; PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens Phyre2 PDB 3dba chain B Region: 3 - 152 Aligned: 149 Modelled: 150 Confidence: 99.8% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:cone cgmp-specific 3',5'-cyclic phosphodiesterase subunit PDBTitle: crystal structure of the cgmp-bound gaf a domain from the2 photoreceptor phosphodiesterase 6c Phyre2 PDB 2ool chain A domain 1 Region: 2 - 155 Aligned: 153 Modelled: 153 Confidence: 99.8% Identity: 10% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3e0y chain A Region: 11 - 158 Aligned: 142 Modelled: 148 Confidence: 99.8% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a conserved domain from a protein of2 geobacter sulfurreducens pca Phyre2 1 c1vhmB_ 2 d1vhma_ 3 c3ksiA_ 4 c3mmhA_ 5 d1f5ma_ 6 c3p01C_ 7 d2o9ca1 8 c3p01A_ 9 c1mc0A_ 10 c3o5yA_ 11 c3trcA_ 12 d2veaa1 13 c3ci6B_ 14 c2zmfA_ 15 c3k2nB_ 16 c3mf0A_ 17 c3eeaB_ 18 c3dbaB_ 19 d2oola1 20 c3e0yA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vhmB_ 100.0 100 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein yebr; PDBTitle: crystal structure of an hypothetical protein 2 d1vhma_ 100.0 100 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 3 c3ksiA_ 100.0 51 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) 4 c3mmhA_ 99.9 43 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate 5 d1f5ma_ 99.9 40 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 6 c3p01C_ 99.9 16 PDB header:signaling protein Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 7 d2o9ca1 99.8 12 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 8 c3p01A_ 99.8 15 PDB header:signaling protein Chain: A: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 9 c1mc0A_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a; PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains 10 c3o5yA_ 99.8 22 PDB header:transcription regulator Chain: A: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a 11 c3trcA_ 99.8 16 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii 12 d2veaa1 99.8 8 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 13 c3ci6B_ 99.8 19 PDB header:transferase Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase 14 c2zmfA_ 99.8 13 PDB header:hydrolase Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase PDBTitle: crystal structure of the c-terminal gaf domain of human2 phosphodiesterase 10a 15 c3k2nB_ 99.8 9 PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls 16 c3mf0A_ 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: crystal structure of pde5a gaf domain (89-518) 17 c3eeaB_ 99.8 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:gaf domain/hd domain protein; PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens 18 c3dbaB_ 99.8 14 PDB header:hydrolase Chain: B: PDB Molecule:cone cgmp-specific 3',5'-cyclic phosphodiesterase subunit PDBTitle: crystal structure of the cgmp-bound gaf a domain from the2 photoreceptor phosphodiesterase 6c 19 d2oola1 99.8 10 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 20 c3e0yA_ 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a conserved domain from a protein of2 geobacter sulfurreducens pca 21 c3ibjB_ not modelled 99.8 13 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase; PDBTitle: x-ray structure of pde2a 22 c3oovA_ not modelled 99.8 19 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: crystal structure of a methyl-accepting chemotaxis protein, residues2 122 to 287 23 c2vjwA_ not modelled 99.8 16 PDB header:hydrolase Chain: A: PDB Molecule:gaf family protein; PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis 24 c1ykdB_ not modelled 99.8 18 PDB header:lyase Chain: B: PDB Molecule:adenylate cyclase; PDBTitle: crystal structure of the tandem gaf domains from a cyanobacterial2 adenylyl cyclase: novel modes of ligand-binding and dimerization 25 c2lb5A_ not modelled 99.7 17 PDB header:transferase Chain: A: PDB Molecule:sensor histidine kinase; PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form 26 c3hcyB_ not modelled 99.7 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative two-component sensor histidine kinase protein; PDBTitle: the crystal structure of the domain of putative two-component sensor2 histidine kinase protein from sinorhizobium meliloti 1021 27 c2qybA_ not modelled 99.7 17 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein, putative; PDBTitle: crystal structure of the gaf domain region of putative membrane2 protein from geobacter sulfurreducens pca 28 c2w3gA_ not modelled 99.7 21 PDB header:transferase Chain: A: PDB Molecule:two component sensor histidine kinase devs (gaf PDBTitle: air-oxidized structure of the first gaf domain of2 mycobacterium tuberculosis doss 29 c2k31A_ not modelled 99.7 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphodiesterase 5a, cgmp-specific; PDBTitle: solution structure of cgmp-binding gaf domain of2 phosphodiesterase 5 30 d2k2na1 not modelled 99.7 17 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 31 c2oolA_ not modelled 99.6 9 PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris 32 d1mc0a1 not modelled 99.6 16 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 33 d3c2wa1 not modelled 99.6 11 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 34 d1mc0a2 not modelled 99.6 18 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 35 c3e98B_ not modelled 99.5 17 PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution 36 c2o9bA_ not modelled 99.4 10 PDB header:transferase Chain: A: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain 37 c3c2wB_ not modelled 99.4 10 PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state 38 c2xssB_ not modelled 99.3 17 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-specific 3', 5'-cyclic phosphodiesterase; PDBTitle: crystal structure of gafb from the human phosphodiesterase 5 39 c2veaA_ not modelled 99.3 10 PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. 40 c2w1rA_ not modelled 98.7 15 PDB header:transcription Chain: A: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of the c-terminal domain of b. subtilis2 spovt 41 c2w1tB_ not modelled 98.3 14 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 42 c2gx5B_ not modelled 96.7 11 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 43 c3qp1A_ not modelled 93.1 10 PDB header:transcription Chain: A: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl 44 d1l3la2 not modelled 92.2 10 Fold:Profilin-like Superfamily:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Family:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors 45 c2avxA_ not modelled 78.8 10 PDB header:transcription Chain: A: PDB Molecule:regulatory protein sdia; PDBTitle: solution structure of e coli sdia1-171 46 c3qp5C_ not modelled 77.7 11 PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl) 47 c3citB_ not modelled 75.4 22 PDB header:transferase Chain: B: PDB Molecule:sensor histidine kinase; PDBTitle: crystal structure of the gaf domain of a putative sensor histidine2 kinase from pseudomonas syringae pv. tomato 48 d1tf1a_ not modelled 75.3 15 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 49 c1yspA_ not modelled 70.1 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator kdgr; PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr. 50 c2o0yB_ not modelled 64.1 16 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp. 51 c1ysqA_ not modelled 59.8 15 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj; PDBTitle: the crystal structure of transcriptional regulator yaij 52 c2g7uB_ not modelled 58.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1 53 c3mq0A_ not modelled 58.3 11 PDB header:transcription repressor Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon; PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr 54 c1stzB_ not modelled 47.5 10 PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution 55 c3d3oA_ not modelled 47.5 10 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator, icir family; PDBTitle: crystal structure of the effector domain of the putative2 transcriptional regulator iclr from acinetobacter sp. adp1 56 c3fpvC_ not modelled 45.8 12 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 57 d1stza2 not modelled 41.0 10 Fold:Profilin-like Superfamily:GAF domain-like Family:HrcA C-terminal domain-like 58 d2a2la1 not modelled 34.8 17 Fold:Profilin-like Superfamily:GlcG-like Family:GlcG-like 59 c3bjnA_ not modelled 30.9 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, putative; PDBTitle: crystal structure of c-terminal domain of putative transcriptional2 regulator from vibrio cholerae, targeted domain 79-240 60 c3obfA_ not modelled 29.2 13 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator, iclr family; PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302 61 d2o9aa1 not modelled 25.4 15 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 62 c1mkmA_ not modelled 24.9 11 PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr 63 c3e4pB_ not modelled 24.6 10 PDB header:transferase Chain: B: PDB Molecule:c4-dicarboxylate transport sensor protein dctb; PDBTitle: crystal structure of malonate occupied dctb 64 c2uv0G_ not modelled 23.0 16 PDB header:transcription Chain: G: PDB Molecule:transcriptional activator protein lasr; PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer 65 c2ia2D_ not modelled 21.3 14 PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1 66 c1h0mD_ not modelled 18.7 13 PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna 67 c3hlyA_ not modelled 15.4 22 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 68 c3r4kD_ not modelled 13.6 13 PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution 69 d1p0za_ not modelled 13.5 8 Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase 70 d1mkma2 not modelled 13.0 13 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 71 d3by8a1 not modelled 12.0 11 Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase 72 c2pfiA_ not modelled 9.9 13 PDB header:transport protein Chain: A: PDB Molecule:chloride channel protein clc-ka; PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka 73 c3btpB_ not modelled 9.5 19 PDB header:dna binding protein, chaperone Chain: B: PDB Molecule:protein vire1; PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding 74 c2q0oA_ not modelled 8.3 5 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing 75 c3fioB_ not modelled 8.0 20 PDB header:nucleotide binding protein, metal bindin Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain 76 d2o16a3 not modelled 7.9 33 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 77 c3fosA_ not modelled 7.4 11 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of two-component sensor histidine kinase domain from2 bacillus subtilis subsp. subtilis str. 168 78 c2ev2B_ not modelled 7.3 12 PDB header:lyase Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302; PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5 79 d1y5ha3 not modelled 7.0 13 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 80 c2wukD_ not modelled 7.0 16 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 81 c3cagF_ not modelled 7.0 14 PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines. 82 d2p5ma1 not modelled 6.8 9 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 83 d2rc3a1 not modelled 6.7 33 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 84 c2w0nA_ not modelled 6.7 21 PDB header:transferase Chain: A: PDB Molecule:sensor protein dcus; PDBTitle: plasticity of pas domain and potential role for signal2 transduction in the histidine-kinase dcus 85 c3libA_ not modelled 6.6 21 PDB header:signaling protein Chain: A: PDB Molecule:hypothetical sensory transduction histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase mmhk1s-z3 86 d1k8ib2 not modelled 6.5 13 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 87 d1b4ba_ not modelled 6.4 14 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 88 d2yzia1 not modelled 6.0 13 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 89 d1pbja3 not modelled 5.6 33 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 90 d2pyqa1 not modelled 5.4 15 Fold:Jann4075-like Superfamily:Jann4075-like Family:Jann4075-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0