Email l.a.kelley@imperial.ac.uk Description P45804 Date Thu Jan 5 12:03:49 GMT 2012 Unique Job ID 1e3cecdfbfaf4d4f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2zuxA_ 84.5 16 PDB header:lyase Chain: A: PDB Molecule:yesw protein; PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose 2 c2zuyA_ 81.8 14 PDB header:lyase Chain: A: PDB Molecule:yesx protein; PDBTitle: crystal structure of exotype rhamnogalacturonan lyase yesx 3 c2c4dA_ 68.2 24 PDB header:lectin Chain: A: PDB Molecule:psathyrella velutina lectin pvl; PDBTitle: 2.6a crystal structure of psathyrella velutina lectin in2 complex with n-acetylglucosamine 4 c3fcsA_ 58.4 16 PDB header:cell adhesion/blood clotting Chain: A: PDB Molecule:integrin, alpha 2b; PDBTitle: structure of complete ectodomain of integrin aiibb3 5 d1k1xa2 53.6 24 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:4-alpha-glucanotransferase, C-terminal domain 6 c3od9B_ 49.5 50 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:putative exported protein; PDBTitle: crystal structure of plii-ah, periplasmic lysozyme inhibitor of i-type2 lysozyme from aeromonas hydrophyla 7 d1ig4a_ 22.4 11 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 8 c2xq2A_ 21.3 8 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 9 c2k2dA_ 20.9 13 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 10 c2bbjB_ 19.1 13 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 11 c2rrfA_ 18.2 25 PDB header:unknown function Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21; PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21 12 d1jv2a4 17.1 26 Fold:7-bladed beta-propeller Superfamily:Integrin alpha N-terminal domain Family:Integrin alpha N-terminal domain 13 c2q14A_ 16.9 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase; PDBTitle: crystal structure of phosphohydrolase (bt4208) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution 14 c1mv3A_ 16.4 29 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc 15 c3f2eA_ 16.0 42 PDB header:viral protein Chain: A: PDB Molecule:sirv coat protein; PDBTitle: crystal structure of yellowstone sirv coat protein c-2 terminus 16 d1qusa_ 15.7 30 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 17 c3dd7A_ 14.3 11 PDB header:ribosome inhibitor Chain: A: PDB Molecule:death on curing protein; PDBTitle: structure of doch66y in complex with the c-terminal domain of phd 18 c2o6iA_ 13.6 17 PDB header:hydrolase Chain: A: PDB Molecule:hd domain protein; PDBTitle: structure of an enterococcus faecalis hd domain phosphohydrolase 19 d2o6ia1 13.6 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 20 c1s8kA_ 13.4 56 PDB header:toxin Chain: A: PDB Molecule:toxin bmkk4; PDBTitle: solution structure of bmkk4, a novel potassium channel2 blocker from scorpion buthus martensii karsch, 253 structures 21 d2ppxa1 not modelled 12.3 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 22 c2ppxA_ not modelled 12.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens 23 c2dk6A_ not modelled 12.1 10 PDB header:signaling protein Chain: A: PDB Molecule:parp11 protein; PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11) 24 c2kq5A_ not modelled 11.7 22 PDB header:unknown function Chain: A: PDB Molecule:avirulence protein; PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha 25 c1w1nA_ not modelled 11.6 10 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1; PDBTitle: the solution structure of the fatc domain of the protein2 kinase tor1 from yeast 26 c1x4rA_ not modelled 11.5 26 PDB header:apoptosis Chain: A: PDB Molecule:parp14 protein; PDBTitle: solution structure of wwe domain in parp14 protein 27 c2k0rA_ not modelled 11.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbd; PDBTitle: solution structure of the c103s mutant of the n-terminal2 domain of dsbd from neisseria meningitidis 28 d1r4ga_ not modelled 11.4 21 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Phosphoprotein XD domain Family:Phosphoprotein XD domain 29 c1k1yA_ not modelled 11.3 28 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose 30 d1nekd_ not modelled 10.9 15 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 31 c2ky8A_ not modelled 10.9 17 PDB header:transcription/dna Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence 32 c2qf9B_ not modelled 10.8 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative secreted protein; PDBTitle: crystal structure of putative secreted protein duf305 from2 streptomyces coelicolor 33 d1ujra_ not modelled 10.7 20 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 34 c1pzuH_ not modelled 10.6 14 PDB header:transcription/dna Chain: H: PDB Molecule:nuclear factor of activated t-cells, cytoplasmic PDBTitle: an asymmetric nfat1-rhr homodimer on a pseudo-palindromic,2 kappa-b site 35 c1l5gA_ not modelled 10.5 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand 36 c2d8jA_ not modelled 10.5 16 PDB header:transferase Chain: A: PDB Molecule:fyn-related kinase; PDBTitle: solution structure of the sh3 domain of fyn-related kinase 37 d1a3qa1 not modelled 10.5 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 38 c2ov2O_ not modelled 10.3 27 PDB header:protein binding/transferase Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4) 39 c2dbmA_ not modelled 10.2 15 PDB header:transferase, signaling protein Chain: A: PDB Molecule:sh3-containing grb2-like protein 2; PDBTitle: solution structures of the sh3 domain of human sh3-2 containing grb2-like protein 2 40 d2r6gf1 not modelled 10.0 11 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 41 d1ofcx1 not modelled 9.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 42 c2yrvA_ not modelled 9.7 17 PDB header:transcription Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a; PDBTitle: solution structure of the rbb1nt domain of human2 rb(retinoblastoma)-binding protein 1 43 c1yn8E_ not modelled 9.7 8 PDB header:unknown function Chain: E: PDB Molecule:nap1-binding protein 2; PDBTitle: sh3 domain of yeast nbp2 44 c2yunA_ not modelled 9.5 6 PDB header:protein transport Chain: A: PDB Molecule:nostrin; PDBTitle: solution structure of the sh3 domain of human nostrin 45 d1jo8a_ not modelled 9.4 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 46 c3v4vA_ not modelled 9.4 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-4; PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1 and2 ro0505376 47 c2hw4A_ not modelled 9.4 15 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 48 d1tyea_ not modelled 9.2 23 Fold:7-bladed beta-propeller Superfamily:Integrin alpha N-terminal domain Family:Integrin alpha N-terminal domain 49 c2x3wD_ not modelled 9.1 19 PDB header:endocytosis Chain: D: PDB Molecule:protein kinase c and casein kinase substrate in neurons PDBTitle: structure of mouse syndapin i (crystal form 2) 50 c1jrjA_ not modelled 9.0 17 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 51 c2ed1A_ not modelled 9.0 27 PDB header:signaling protein Chain: A: PDB Molecule:130 kda phosphatidylinositol 4,5-biphosphate- PDBTitle: solution structure of the sh3 domain of 130 kda2 phosphatidylinositol 4,5-biphosphate-dependent arf1 gtpase-3 activating protein 52 c1z9zA_ not modelled 8.9 19 PDB header:structural protein Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: crystal structure of yeast sla1 sh3 domain 3 53 c2j8aA_ not modelled 8.8 25 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 PDBTitle: x-ray structure of the n-terminus rrm domain of set1 54 c1k8wA_ not modelled 8.7 18 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 55 c3fmyA_ not modelled 8.6 21 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 56 d1sjqa_ not modelled 8.6 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 57 d1shfa_ not modelled 8.6 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 58 c2hlgA_ not modelled 8.6 67 PDB header:plant protein Chain: A: PDB Molecule:fruit-specific protein; PDBTitle: nmr solution structure of a new tomato peptide 59 c3mmlE_ not modelled 8.4 7 PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 60 c2y3nB_ not modelled 8.3 71 PDB header:structrual protein/hydrolase Chain: B: PDB Molecule:cellulosomal family-48 processive glycoside hydrolase; PDBTitle: type ii cohesin-dockerin domain from bacteroides cellolosolvens 61 d1ohzb_ not modelled 8.3 57 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 62 c2egcA_ not modelled 8.2 13 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the fifth sh3 domain from human2 kiaa0418 protein 63 d1k4us_ not modelled 8.2 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 64 d1dava_ not modelled 8.2 57 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 65 d1vlba4 not modelled 8.2 15 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 66 d1t0ha_ not modelled 8.1 6 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 67 c1jqsB_ not modelled 7.9 33 PDB header:ribosome Chain: B: PDB Molecule:elongation factor g; PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog 68 d1k8wa5 not modelled 7.9 18 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 69 d1ujya_ not modelled 7.9 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 70 d1q90b_ not modelled 7.8 13 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 71 d1wosa2 not modelled 7.7 15 Fold:Folate-binding domain Superfamily:Folate-binding domain Family:Aminomethyltransferase folate-binding domain 72 d1gcqa_ not modelled 7.7 23 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 73 d1u5ta2 not modelled 7.7 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 74 c1wxpA_ not modelled 7.7 12 PDB header:transport protein Chain: A: PDB Molecule:tho complex subunit 1; PDBTitle: solution structure of the death domain of nuclear matrix2 protein p84 75 d1cska_ not modelled 7.6 8 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 76 d2hw4a1 not modelled 7.6 15 Fold:PHP14-like Superfamily:PHP14-like Family:Janus/Ocnus 77 c2vn5B_ not modelled 7.6 57 PDB header:cell adhesion Chain: B: PDB Molecule:endoglucanase a; PDBTitle: the clostridium cellulolyticum dockerin displays a dual2 binding mode for its cohesin partner 78 d1r3ea2 not modelled 7.5 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 79 c1griA_ not modelled 7.4 18 PDB header:signal transduction adaptor Chain: A: PDB Molecule:growth factor bound protein 2; PDBTitle: grb2 80 d1x4da1 not modelled 7.4 29 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 81 c1gm5A_ not modelled 7.4 17 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 82 d1uj0a_ not modelled 7.4 26 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 83 d1rm6a2 not modelled 7.4 20 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 84 c2qneA_ not modelled 7.3 8 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution 85 d2fc6a1 not modelled 7.3 33 Fold:CCCH zinc finger Superfamily:CCCH zinc finger Family:CCCH zinc finger 86 c2dnuA_ not modelled 7.2 11 PDB header:structural genomics, structural protein Chain: A: PDB Molecule:sh3 multiple domains 1; PDBTitle: solution structure of rsgi ruh-061, a sh3 domain from human 87 d1m3ya1 not modelled 7.2 30 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54 88 c3p0dD_ not modelled 7.2 57 PDB header:hydrolase Chain: D: PDB Molecule:glycoside hydrolase family 9; PDBTitle: crystal structure of a multimodular ternary protein complex from2 clostridium thermocellum 89 c1a3qA_ not modelled 7.2 18 PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna 90 c1w70A_ not modelled 7.1 16 PDB header:sh3 domain Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: sh3 domain of p40phox complexed with c-terminal polyproline2 region of p47phox 91 d1efna_ not modelled 7.1 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 92 d2fb1a2 not modelled 7.1 12 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 93 c2fb1A_ not modelled 7.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 94 c3eamB_ not modelled 7.0 13 PDB header:membrane protein, transport protein Chain: B: PDB Molecule:glr4197 protein; PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel 95 d2cclb1 not modelled 7.0 57 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 96 c2dl4A_ not modelled 7.0 10 PDB header:signaling protein Chain: A: PDB Molecule:protein stac; PDBTitle: solution structure of the first sh3 domain of stac protein 97 d2bvca1 not modelled 7.0 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:Glutamine synthetase, N-terminal domain Family:Glutamine synthetase, N-terminal domain 98 c2k21A_ not modelled 6.8 18 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 99 c2xmfA_ not modelled 6.8 13 PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3