Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	F	I	K	G	L	P	L	M	L	L	T	I	S	L	G	C	N	A	A	V	Q	P	D	R	T	R	I	V	F	N	A	N	D	K	A	T	S	L	R	I	E	N	Q	S	D	K	L	P	Y	L	A	Y	S	W	I	E	N	E
Secondary structure
SS confidence
Disorder		?	?																?	?	?	?			?											?		?																					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	G	E	K	S	D	A	L	L	V	A	L	P	P	I	Q	R	L	E	P	K	A	T	S	Q	V	R	V	V	K	Q	A	S	T	T	Q	L	P	G	D	R	E	T	L	F	F	Y	N	M	R	E	I	P	P	A	P	D	K	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?								?						?												?	?	?	?	?	?	?	?														?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	H	A	I	L	Q	V	A	I	Q	S	R	I	K	L	F	W	R	P	A	A	L	R	K	K	A	G	E	K	V	E	L	Q	L	Q	V	S	Q	Q	G	N	Q	L	T	L	K	N	P	T	A	Y	Y	L	T	I	A	Y	L	G	R
Secondary structure
SS confidence
Disorder		?	?	?																			?	?	?	?	?			?	?																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	E	K	G	V	L	P	G	F	K	T	V	M	V	A	P	F	S	T	V	N	T	N	T	G	S	Y	S	G	S	Q	F	Y	L	G	Y	M	D	D	Y	G	A	L	R	M	T	T	L	N	C	S	G	Q	C	R	L	Q	A	V	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?								?					?	?	?	?	?	?																									?	?	?	?	?	?	?
Disorder confidence
		.	.
Sequence		A	K
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qpx chain A Region: 21 - 239 Aligned: 204 Modelled: 219 Confidence: 100.0% Identity: 43% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 1qun chain A Region: 21 - 225 Aligned: 193 Modelled: 205 Confidence: 100.0% Identity: 34% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 2co7 chain B Region: 16 - 230 Aligned: 196 Modelled: 215 Confidence: 100.0% Identity: 28% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1z9s chain A Region: 17 - 231 Aligned: 195 Modelled: 215 Confidence: 100.0% Identity: 27% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 1l4i chain A Region: 21 - 225 Aligned: 183 Modelled: 201 Confidence: 100.0% Identity: 40% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 3f6i chain B Region: 21 - 228 Aligned: 183 Modelled: 199 Confidence: 100.0% Identity: 26% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 3q48 chain B Region: 23 - 230 Aligned: 182 Modelled: 190 Confidence: 100.0% Identity: 34% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 21 - 146 Aligned: 123 Modelled: 126 Confidence: 100.0% Identity: 50% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 21 - 143 Aligned: 116 Modelled: 123 Confidence: 100.0% Identity: 38% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 16 - 142 Aligned: 117 Modelled: 127 Confidence: 100.0% Identity: 31% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1p5v chain A domain 1 Region: 16 - 142 Aligned: 111 Modelled: 127 Confidence: 100.0% Identity: 30% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 21 - 142 Aligned: 112 Modelled: 122 Confidence: 100.0% Identity: 43% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 2 Region: 147 - 240 Aligned: 91 Modelled: 94 Confidence: 99.9% Identity: 32% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 3bwu chain C domain 2 Region: 148 - 227 Aligned: 76 Modelled: 76 Confidence: 99.8% Identity: 32% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 143 - 230 Aligned: 78 Modelled: 88 Confidence: 99.7% Identity: 21% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 148 - 230 Aligned: 75 Modelled: 83 Confidence: 99.7% Identity: 23% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 146 - 225 Aligned: 69 Modelled: 76 Confidence: 99.7% Identity: 39% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2qsv chain A Region: 21 - 204 Aligned: 176 Modelled: 173 Confidence: 97.8% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 Phyre2 PDB 1m1s chain A Region: 19 - 121 Aligned: 91 Modelled: 101 Confidence: 97.4% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 22 - 118 Aligned: 85 Modelled: 97 Confidence: 96.4% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 1 c1qpxA_ 2 c1qunA_ 3 c2co7B_ 4 c1z9sA_ 5 c1l4iA_ 6 c3f6iB_ 7 c3q48B_ 8 d2j2za1 9 d3bwuc1 10 d2co7b1 11 d1p5va1 12 d1l4ia1 13 d2j2za2 14 d3bwuc2 15 d1p5va2 16 d2co7b2 17 d1l4ia2 18 c2qsvA_ 19 d1m1sa_ 20 d1rowa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qpxA_ 100.0 43 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 2 c1qunA_ 100.0 34 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 3 c2co7B_ 100.0 28 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c1z9sA_ 100.0 27 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 5 c1l4iA_ 100.0 40 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 6 c3f6iB_ 100.0 26 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 7 c3q48B_ 100.0 34 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 8 d2j2za1 100.0 50 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d3bwuc1 100.0 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2co7b1 100.0 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d1p5va1 100.0 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d2j2za2 99.9 32 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d3bwuc2 99.8 32 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d1p5va2 99.7 21 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d2co7b2 99.7 23 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d1l4ia2 99.7 39 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 c2qsvA_ 97.8 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 19 d1m1sa_ 97.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 d1rowa_ 96.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 21 c1z9oB_ not modelled 96.2 17 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 22 d1grwa_ not modelled 96.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 23 d1mspa_ not modelled 96.0 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 24 c2e6jA_ not modelled 94.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 25 c3qisA_ not modelled 94.0 19 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 26 c3qbtH_ not modelled 92.5 19 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 27 c2ys4A_ not modelled 91.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 28 d1e42a1 not modelled 86.5 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 29 d1wica_ not modelled 85.4 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 30 c3ac0B_ not modelled 85.2 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 31 d2vzsa2 not modelled 81.9 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 32 d1ejxb_ not modelled 79.6 19 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 33 d4ubpb_ not modelled 78.3 22 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 34 c2x41A_ not modelled 75.3 18 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 35 d1e9ya1 not modelled 73.1 21 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 36 c3qgaD_ not modelled 69.8 18 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 37 c1yycA_ not modelled 68.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 38 c1e9zA_ not modelled 66.6 21 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 39 c3o0lB_ not modelled 63.2 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 40 d1ufga_ not modelled 61.0 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 41 c1e42A_ not modelled 60.7 17 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 42 c2lllA_ not modelled 52.5 12 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 43 c2qvkA_ not modelled 50.9 5 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 44 c3ginB_ not modelled 50.5 9 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 45 d1v8ha1 not modelled 49.0 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SoxZ-like 46 d1ifra_ not modelled 48.9 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 47 c3jt0B_ not modelled 44.1 14 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 48 d2fwua1 not modelled 41.2 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 49 d1kyaa2 not modelled 40.5 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 50 d1hfua2 not modelled 40.3 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 51 d1aoza2 not modelled 35.3 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 52 c3eujB_ not modelled 34.9 25 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 53 d2dpka1 not modelled 33.4 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 54 c2oxgE_ not modelled 33.4 11 PDB header:transport protein Chain: E: PDB Molecule:soxz protein; PDBTitle: the soxyz complex of paracoccus pantotrophus 55 c3butA_ not modelled 29.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 56 d1jz8a2 not modelled 28.3 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 57 c3h6aB_ not modelled 27.0 8 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 58 d2q9oa2 not modelled 25.3 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 59 d1xo8a_ not modelled 23.3 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 60 d1w8oa1 not modelled 22.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 61 d1ivta_ not modelled 21.6 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 62 d1k3ra1 not modelled 20.0 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 63 d1v10a2 not modelled 20.0 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 64 c3hs8A_ not modelled 19.0 13 PDB header:endocytosis Chain: A: PDB Molecule:adaptor protein complex ap-2, alpha 2 subunit; PDBTitle: intersectin 1-peptide-ap2 alpha ear complex 65 c2kutA_ not modelled 16.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of gmr58a from geobacter metallireducens.2 northeast structural genomics consortium target gmr58a 66 c2frgP_ not modelled 16.3 14 PDB header:immune system Chain: P: PDB Molecule:trem-like transcript-1; PDBTitle: structure of the immunoglobulin-like domain of human tlt-1 67 c1wkwB_ not modelled 15.7 44 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 68 c3isyA_ not modelled 14.1 12 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 69 c2vzvB_ not modelled 13.8 14 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 70 d1hmja_ not modelled 13.7 23 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 71 c2l0dA_ not modelled 12.9 15 PDB header:cell adhesion Chain: A: PDB Molecule:cell surface protein; PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a 72 c3rfrI_ not modelled 12.8 11 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 73 c3ts3D_ not modelled 11.6 27 PDB header:viral protein Chain: D: PDB Molecule:capsid polyprotein; PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution 74 d1gyca2 not modelled 10.9 8 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 75 c1ky6A_ not modelled 10.7 13 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:alpha-adaptin c; PDBTitle: ap-2 clathrin adaptor alpha-appendage in complex with epsin2 dpw peptide 76 c1zeqX_ not modelled 9.9 7 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 77 d2huha1 not modelled 9.9 27 Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain 78 d2v33a1 not modelled 9.8 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Class II viral fusion proteins C-terminal domain 79 c2qziA_ not modelled 9.4 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 80 c1l9mB_ not modelled 8.8 17 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 81 c2phgB_ not modelled 8.7 50 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 82 c2pheC_ not modelled 8.5 50 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 83 c3i74B_ not modelled 7.9 18 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:subtilisin-like protease; PDBTitle: crystal structure of the plant subtilisin-like protease sbt3 in2 complex with a chloromethylketone inhibitor 84 c2je8B_ not modelled 7.2 8 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 85 c3rb7E_ not modelled 7.2 8 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 86 c2kl6A_ not modelled 7.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a 87 d2f7fa1 not modelled 6.8 23 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 88 c1z8yF_ not modelled 6.1 11 PDB header:virus Chain: F: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 89 c3k6sB_ not modelled 6.0 21 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 90 d1eg3a3 not modelled 5.7 38 Fold:WW domain-like Superfamily:WW domain Family:WW domain 91 d1cuoa_ not modelled 5.5 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0