PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ts3D_

Fold library id	PDB Header	Molecule	Title
c3ts3D_	PDB header: viral protein	Chain: D: PDB Molecule: capsid polyprotein;	PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution

Links to external resources
Added to library: Sat Oct 1 10:06:32 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S I Y L P L P Q A D D Q Y T P Y F V Y N F Q G E R V S T T E T G V F C L A A I P A A T T S S R Y N N Q I T I P S I G Y R G T L F L L D A A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G
S S S S B
T T S
B
S
S T T S
B
T T S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W W N I L D V T Q T G V L F G Q P R L G V G V M Q T M K T L K Q H I K D Y T E P A I Q K Y Y P G T T N L D E Q L K Q R L N L A E G D P V I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
G G G
T T T T T
T T S T T B
G G G
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence M G D T N G R R A A L F Y R T S D E K Y I L F F S T T E D P G A Q Y Q N L K M L Y F W N W S Y S D T K Q Q F L D H L R T V Q F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T T S S
T T S
S
T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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All images and data generated by Phyre2 are free to use in any publication with acknowledgement
Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	I	Y	L	P	L	P	Q	A	D	D	Q	Y	T	P	Y	F	V	Y	N	F	Q	G	E	R	V	S	T	T	E	T	G	V	F	C	L	A	A	I	P	A	A	T	T	S	S	R	Y	N	N	Q	I	T	I	P	S	I	G	Y	R	G	T	L	F	L	L	D	A	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	G	G	G							S	S	S	S	B		T	T	S		B			S		S	T	T	S								B			T	T	S							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	W	N	I	L	D	V	T	Q	T	G	V	L	F	G	Q	P	R	L	G	V	G	V	M	Q	T	M	K	T	L	K	Q	H	I	K	D	Y	T	E	P	A	I	Q	K	Y	Y	P	G	T	T	N	L	D	E	Q	L	K	Q	R	L	N	L	A	E	G	D	P	V	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T							G	G	G												T	T	T	T	T		T	T	S	T	T				B		G	G	G												T			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	M	G	D	T	N	G	R	R	A	A	L	F	Y	R	T	S	D	E	K	Y	I	L	F	F	S	T	T	E	D	P	G	A	Q	Y	Q	N	L	K	M	L	Y	F	W	N	W	S	Y	S	D	T	K	Q	Q	F	L	D	H	L	R	T	V	Q	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T										T	T	T	T									S	S				T	T	S		S											T	T													S