Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	V	V	K	C	K	P	T	S	P	G	R	R	H	V	V	K	V	V	N	P	E	L	H	K	G	K	P	F	A	P	L	L	E	K	N	S	K	S	G	G	R	N	N	N	G	R	I	T	T	R	H	I	G	G	G	H	K	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?				?		?	?					?		?	?	?	?											?	?	?	?	?	?	?	?	?	?	?									?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	Y	R	I	V	D	F	K	R	N	K	D	G	I	P	A	V	V	E	R	L	E	Y	D	P	N	R	S	A	N	I	A	L	V	L	Y	K	D	G	E	R	R	Y	I	L	A	P	K	G	L	K	A	G	D	Q	I	Q	S	G	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	A	A	I	K	P	G	N	T	L	P	M	R	N	I	P	V	G	S	T	V	H	N	V	E	M	K	P	G	K	G	G	Q	L	A	R	S	A	G	T	Y	V	Q	I	V	A	R	D	G	A	Y	V	T	L	R	L	R	S	G	E
Secondary structure
SS confidence
Disorder			?																									?	?	?	?																													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	R	K	V	E	A	D	C	R	A	T	L	G	E	V	G	N	A	E	H	M	L	R	V	L	G	K	A	G	A	A	R	W	R	G	V	R	P	T	V	R	G	T	A	M	N	P	V	D	H	P	H	G	G	G	E	G	R	N	F
Secondary structure
SS confidence
Disorder		?																?	?	?	?	?						?																		?					?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Sequence		G	K	H	P	V	T	P	W	G	V	Q	T	K	G	K	K	T	R	S	N	K	R	T	D	K	F	I	V	R	R	R	S	K
Secondary structure
SS confidence
Disorder		?	?	?	?									?		?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2z4l chain C Region: 2 - 272 Aligned: 271 Modelled: 271 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: C: PDB Molecule:50s ribosomal protein l2; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. Phyre2 PDB 3d5b chain D Region: 2 - 268 Aligned: 267 Modelled: 267 Confidence: 100.0% Identity: 59% PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. Phyre2 PDB 3bbo chain E Region: 4 - 270 Aligned: 262 Modelled: 262 Confidence: 100.0% Identity: 48% PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein l2; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2gya chain A Region: 39 - 265 Aligned: 227 Modelled: 227 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l2; PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 Phyre2 PDB 4a1c chain A Region: 37 - 273 Aligned: 236 Modelled: 237 Confidence: 100.0% Identity: 34% PDB header:ribosome Chain: A: PDB Molecule:rpl8; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 PDB 2zkr chain A Region: 35 - 262 Aligned: 225 Modelled: 225 Confidence: 100.0% Identity: 32% PDB header:ribosomal protein/rna Chain: A: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1kqs chain A Region: 36 - 262 Aligned: 225 Modelled: 227 Confidence: 100.0% Identity: 40% PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis Phyre2 PDB 2b66 chain D Region: 61 - 233 Aligned: 173 Modelled: 173 Confidence: 100.0% Identity: 60% PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400 Phyre2 PDB 2qam chain C domain 1 Region: 126 - 270 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 100% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: C-terminal domain of ribosomal protein L2 Phyre2 PDB 2j01 chain D domain 1 Region: 126 - 268 Aligned: 143 Modelled: 143 Confidence: 100.0% Identity: 62% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: C-terminal domain of ribosomal protein L2 Phyre2 PDB 2zjr chain A domain 1 Region: 127 - 268 Aligned: 142 Modelled: 142 Confidence: 100.0% Identity: 62% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: C-terminal domain of ribosomal protein L2 Phyre2 PDB 1vqo chain A domain 1 Region: 127 - 265 Aligned: 139 Modelled: 139 Confidence: 100.0% Identity: 38% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: C-terminal domain of ribosomal protein L2 Phyre2 PDB 1rl2 chain A Region: 61 - 196 Aligned: 136 Modelled: 136 Confidence: 100.0% Identity: 64% PDB header:ribosomal protein Chain: A: PDB Molecule:protein (ribosomal protein l2); PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus Phyre2 PDB 2ftc chain B Region: 78 - 209 Aligned: 131 Modelled: 132 Confidence: 100.0% Identity: 39% PDB header:ribosome Chain: B: PDB Molecule:mitochondrial ribosomal protein l2; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 2j01 chain D domain 2 Region: 2 - 125 Aligned: 124 Modelled: 124 Confidence: 100.0% Identity: 55% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2zjr chain A domain 2 Region: 33 - 126 Aligned: 94 Modelled: 94 Confidence: 100.0% Identity: 62% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1rl2 chain A domain 1 Region: 127 - 196 Aligned: 70 Modelled: 70 Confidence: 99.9% Identity: 60% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: C-terminal domain of ribosomal protein L2 Phyre2 PDB 1vqo chain A domain 2 Region: 36 - 126 Aligned: 89 Modelled: 91 Confidence: 99.9% Identity: 39% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1rl2 chain A domain 2 Region: 61 - 126 Aligned: 66 Modelled: 66 Confidence: 99.9% Identity: 68% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2qam chain C domain 2 Region: 62 - 125 Aligned: 64 Modelled: 64 Confidence: 99.8% Identity: 100% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 1 c2z4lC_ 2 c3d5bD_ 3 c3bboE_ 4 c2gyaA_ 5 c4a1cA_ 6 c2zkra_ 7 c1kqsA_ 8 c2b66D_ 9 d2qamc1 10 d2j01d1 11 d2zjra1 12 d1vqoa1 13 c1rl2A_ 14 c2ftcB_ 15 d2j01d2 16 d2zjra2 17 d1rl2a1 18 d1vqoa2 19 d1rl2a2 20 d2qamc2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2z4lC_ 100.0 100 PDB header:ribosome Chain: C: PDB Molecule:50s ribosomal protein l2; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. 2 c3d5bD_ 100.0 59 PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 3 c3bboE_ 100.0 48 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein l2; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 4 c2gyaA_ 100.0 100 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l2; PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 5 c4a1cA_ 100.0 34 PDB header:ribosome Chain: A: PDB Molecule:rpl8; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 6 c2zkra_ 100.0 32 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 7 c1kqsA_ 100.0 40 PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis 8 c2b66D_ 100.0 60 PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400 9 d2qamc1 100.0 100 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 10 d2j01d1 100.0 62 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 11 d2zjra1 100.0 62 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 12 d1vqoa1 100.0 38 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 13 c1rl2A_ 100.0 64 PDB header:ribosomal protein Chain: A: PDB Molecule:protein (ribosomal protein l2); PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus 14 c2ftcB_ 100.0 39 PDB header:ribosome Chain: B: PDB Molecule:mitochondrial ribosomal protein l2; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 15 d2j01d2 100.0 55 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 16 d2zjra2 100.0 62 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 17 d1rl2a1 99.9 60 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 18 d1vqoa2 99.9 39 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 19 d1rl2a2 99.9 68 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 d2qamc2 99.8 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 21 c3peiA_ not modelled 87.1 24 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis 22 d2dy1a1 not modelled 65.8 21 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 23 c3ij3A_ not modelled 60.9 29 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii 24 c1lanA_ not modelled 60.7 24 PDB header:hydrolase (alpha-aminoacylpeptide) Chain: A: PDB Molecule:leucine aminopeptidase; PDBTitle: leucine aminopeptidase complex with l-leucinal 25 c3h8gC_ not modelled 53.3 21 PDB header:hydrolase Chain: C: PDB Molecule:cytosol aminopeptidase; PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida 26 c3kzwD_ not modelled 45.9 22 PDB header:hydrolase Chain: D: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col 27 c3d4rE_ not modelled 38.3 18 PDB header:unknown function Chain: E: PDB Molecule:domain of unknown function from the pfam-b_34464 family; PDBTitle: crystal structure of a duf2118 family protein (mmp0046) from2 methanococcus maripaludis at 2.20 a resolution 28 c3jruB_ not modelled 35.7 22 PDB header:hydrolase Chain: B: PDB Molecule:probable cytosol aminopeptidase; PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331 29 c2jmzA_ not modelled 34.2 19 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein mj0781; PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii 30 d1ulva4 not modelled 32.4 23 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 31 d2bv3a1 not modelled 30.1 30 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 32 c2xzn2_ not modelled 29.0 17 PDB header:ribosome Chain: 2: PDB Molecule:40s ribosomal protein s8; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 33 c1gytG_ not modelled 28.8 22 PDB header:hydrolase Chain: G: PDB Molecule:cytosol aminopeptidase; PDBTitle: e. coli aminopeptidase a (pepa) 34 c1x65A_ not modelled 22.8 18 PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein) 35 c3nx6A_ not modelled 22.4 29 PDB header:chaperone Chain: A: PDB Molecule:10kda chaperonin; PDBTitle: crystal structure of co-chaperonin, groes (xoo4289) from xanthomonas2 oryzae pv. oryzae kacc10331 36 d2pi2e1 not modelled 18.4 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 37 c2pqaB_ not modelled 18.2 17 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 38 c3u5cI_ not modelled 17.3 17 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s8-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 39 d3d3ra1 not modelled 15.9 23 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 40 c3d3rA_ not modelled 15.1 23 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 41 d1lama1 not modelled 14.6 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 42 c3f1zF_ not modelled 14.1 31 PDB header:dna binding protein Chain: F: PDB Molecule:putative nucleic acid-binding lipoprotein; PDBTitle: crystal structure of putative nucleic acid-binding lipoprotein2 (yp_001337197.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.46 a resolution 43 c2jz8A_ not modelled 13.5 67 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55 44 d1lf6a2 not modelled 13.1 20 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 45 c2dfuB_ not modelled 11.7 25 PDB header:isomerase Chain: B: PDB Molecule:probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; PDBTitle: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from thermus thermophilus hb8 46 d1gyta2 not modelled 11.7 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 47 d1yoxa1 not modelled 11.7 24 Fold:Double-stranded beta-helix Superfamily:TRAP-like Family:PA3696/SPS0176-like 48 c2kcyA_ not modelled 11.7 22 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s8e; PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d 49 d1o6aa_ not modelled 10.7 9 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 50 c2cbjA_ not modelled 10.6 14 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase; PDBTitle: structure of the clostridium perfringens nagj family 842 glycoside hydrolase, a homologue of human o-glcnacase in3 complex with pugnac 51 d1g03a_ not modelled 10.5 86 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 52 d2cqaa1 not modelled 10.4 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 53 c2j5uB_ not modelled 10.2 24 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 54 c2kcoA_ not modelled 10.0 24 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s8e; PDBTitle: solution nmr structure of ribosomal protein sso0164 from2 sulfolobus solfataricus. northeast structural genomics3 consortium (nesg) target sst4. 55 d1k28a3 not modelled 9.4 46 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Phage lysozyme 56 d1o9ya_ not modelled 9.3 18 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 57 d1sawa_ not modelled 9.2 24 Fold:FAH Superfamily:FAH Family:FAH 58 d1hxma2 not modelled 9.1 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 59 c3r6oA_ not modelled 9.1 36 PDB header:isomerase Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus 60 d1te7a_ not modelled 8.5 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 61 d1s3sg_ not modelled 8.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 62 c2kjpA_ not modelled 8.4 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ylbl; PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a 63 c3h6qA_ not modelled 8.1 26 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:macrocypin 1a; PDBTitle: macrocypin, a beta-trefoil cysteine protease inhibitor 64 c2qx2A_ not modelled 8.1 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sex pheromone staph-cam373; PDBTitle: structure of the c-terminal domain of sex pheromone staph-cam3732 precursor from staphylococcus aureus 65 d1m06g_ not modelled 7.9 26 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 66 c2hc9A_ not modelled 7.8 29 PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase 1; PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1) 67 d1i42a_ not modelled 7.7 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 68 d2z1ca1 not modelled 7.7 31 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 69 d1gtta2 not modelled 7.7 27 Fold:FAH Superfamily:FAH Family:FAH 70 c1wzoC_ not modelled 7.3 18 PDB header:isomerase Chain: C: PDB Molecule:hpce; PDBTitle: crystal structure of the hpce from thermus thermophilus hb8 71 d1gtta1 not modelled 7.3 24 Fold:FAH Superfamily:FAH Family:FAH 72 c1wz4A_ not modelled 7.0 58 PDB header:gene regulation Chain: A: PDB Molecule:major surface antigen; PDBTitle: solution conformation of adr subtype hbv pre-s2 epitope 73 d1udxa1 not modelled 7.0 32 Fold:Obg-fold Superfamily:Obg GTP-binding protein N-terminal domain Family:Obg GTP-binding protein N-terminal domain 74 d2nvna1 not modelled 6.9 33 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:PMN2A0962/syc2379c-like 75 c2hbpA_ not modelled 6.9 18 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 76 d2uubm1 not modelled 6.8 28 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 77 d2it9a1 not modelled 6.7 27 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:PMN2A0962/syc2379c-like 78 c2jy9A_ not modelled 6.5 24 PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 79 c2knrA_ not modelled 6.4 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atc0905; PDBTitle: solution structure of protein atu0922 from a. tumefaciens. northeast2 structural genomics consortium target att13. ontario center for3 structural proteomics target atc0905 80 d2d6fa1 not modelled 6.3 18 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 81 c2dzkA_ not modelled 6.3 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubx domain-containing protein 2; PDBTitle: structure of the ubx domain in mouse ubx domain-containing2 protein 2 82 d2zgwa1 not modelled 6.2 47 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 83 c3j0cH_ not modelled 6.1 32 PDB header:virus Chain: H: PDB Molecule:e2 envelope glycoprotein; PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map 84 c2k4yA_ not modelled 6.1 11 PDB header:metal transport Chain: A: PDB Molecule:feoa-like protein; PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178 85 d1q1ca2 not modelled 6.1 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 86 d2cr5a1 not modelled 6.0 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 87 d1gff2_ not modelled 6.0 30 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 88 c2q1dX_ not modelled 5.6 20 PDB header:lyase Chain: X: PDB Molecule:2-keto-3-deoxy-d-arabinonate dehydratase; PDBTitle: 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and2 2,5-dioxopentanoate 89 d2ibaa2 not modelled 5.6 43 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 90 c3l0xB_ not modelled 5.5 32 PDB header:replication Chain: B: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: structure of split yeast pcna 91 c2xfbI_ not modelled 5.4 13 PDB header:virus Chain: I: PDB Molecule:e2 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map 92 c3n43B_ not modelled 5.3 13 PDB header:viral protein Chain: B: PDB Molecule:e2 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus. 93 d1c9ha_ not modelled 5.3 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 94 d1q32a1 not modelled 5.3 14 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 95 d1nkqa_ not modelled 5.3 19 Fold:FAH Superfamily:FAH Family:FAH 96 d1j2ga2 not modelled 5.2 29 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 97 c1ponB_ not modelled 5.2 55 PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr 98 c2k5lA_ not modelled 5.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17 99 d2znvb1 not modelled 5.1 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0