Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	R	T	M	L	Q	G	K	L	H	R	V	K	V	T	H	A	D	L	H	Y	E	G	S	C	A	I	D	Q	D	F	L	D	A	A	G	I	L	E	N	E	A	I	D	I	W	N	V	T	N	G	K	R	F	S	T	Y	A	I
Secondary structure
SS confidence
Disorder		?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	E	R	G	S	R	I	I	S	V	N	G	A	A	A	H	C	A	S	V	G	D	I	V	I	I	A	S	F	V	T	M	P	D	E	E	A	R	T	W	R	P	N	V	A	Y	F	E	G	D	N	E	M	K	R	T	A	K	A
Secondary structure
SS confidence
Disorder																																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.
Sequence		I	P	V	Q	V	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pt1 chain B Region: 1 - 115 Aligned: 115 Modelled: 115 Confidence: 100.0% Identity: 99% PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine Phyre2 PDB 2c45 chain F Region: 1 - 113 Aligned: 113 Modelled: 113 Confidence: 100.0% Identity: 50% PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase Phyre2 PDB 1ppy chain A Region: 1 - 118 Aligned: 117 Modelled: 118 Confidence: 100.0% Identity: 100% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Pyruvoyl dependent aspartate decarboxylase, ADC Phyre2 PDB 3oug chain A Region: 1 - 108 Aligned: 106 Modelled: 107 Confidence: 100.0% Identity: 32% PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis Phyre2 PDB 1vc3 chain B Region: 26 - 120 Aligned: 95 Modelled: 95 Confidence: 100.0% Identity: 45% PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase Phyre2 PDB 3plx chain B Region: 26 - 119 Aligned: 93 Modelled: 94 Confidence: 100.0% Identity: 42% PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 Phyre2 PDB 1pyu chain D Region: 26 - 115 Aligned: 90 Modelled: 90 Confidence: 100.0% Identity: 100% PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys Phyre2 PDB 1uhe chain A Region: 26 - 120 Aligned: 94 Modelled: 95 Confidence: 100.0% Identity: 34% PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex Phyre2 PDB 2pjh chain B Region: 9 - 103 Aligned: 95 Modelled: 95 Confidence: 96.5% Identity: 12% PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex Phyre2 PDB 1cz5 chain A Region: 12 - 87 Aligned: 71 Modelled: 76 Confidence: 93.1% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) Phyre2 PDB 1cz5 chain A domain 1 Region: 12 - 87 Aligned: 73 Modelled: 73 Confidence: 82.2% Identity: 14% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Cdc48 N-terminal domain-like Phyre2 PDB 3mt1 chain B Region: 49 - 120 Aligned: 72 Modelled: 72 Confidence: 74.9% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti Phyre2 PDB 1tuf chain A Region: 46 - 120 Aligned: 74 Modelled: 75 Confidence: 70.7% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi Phyre2 PDB 3krt chain C Region: 58 - 95 Aligned: 38 Modelled: 38 Confidence: 65.5% Identity: 13% PDB header:oxidoreductase Chain: C: PDB Molecule:crotonyl coa reductase; PDBTitle: crystal structure of putative crotonyl coa reductase from streptomyces2 coelicolor a3(2) Phyre2 PDB 2yxx chain A Region: 46 - 119 Aligned: 73 Modelled: 74 Confidence: 63.9% Identity: 10% PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) Phyre2 PDB 2glw chain A Region: 24 - 47 Aligned: 24 Modelled: 24 Confidence: 60.5% Identity: 33% PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii Phyre2 PDB 2o0t chain B Region: 41 - 119 Aligned: 78 Modelled: 79 Confidence: 57.8% Identity: 12% PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation Phyre2 PDB 4a10 chain A Region: 58 - 88 Aligned: 31 Modelled: 31 Confidence: 57.2% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:octenoyl-coa reductase/carboxylase; PDBTitle: apo-structure of 2-octenoyl-coa carboxylase reductase cinf from2 streptomyces sp. Phyre2 PDB 2ejv chain A Region: 59 - 94 Aligned: 36 Modelled: 36 Confidence: 55.4% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:l-threonine 3-dehydrogenase; PDBTitle: crystal structure of threonine 3-dehydrogenase complexed with nad+ Phyre2 PDB 1qw1 chain A domain 1 Region: 32 - 81 Aligned: 43 Modelled: 50 Confidence: 53.2% Identity: 16% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: FeoA-like Phyre2 1 c1pt1B_ 2 c2c45F_ 3 d1ppya_ 4 c3ougA_ 5 c1vc3B_ 6 c3plxB_ 7 c1pyuD_ 8 c1uheA_ 9 c2pjhB_ 10 c1cz5A_ 11 d1cz5a1 12 c3mt1B_ 13 c1tufA_ 14 c3krtC_ 15 c2yxxA_ 16 c2glwA_ 17 c2o0tB_ 18 c4a10A_ 19 c2ejvA_ 20 d1qw1a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1pt1B_ 100.0 99 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 2 c2c45F_ 100.0 50 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 3 d1ppya_ 100.0 100 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 4 c3ougA_ 100.0 32 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis 5 c1vc3B_ 100.0 45 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 6 c3plxB_ 100.0 42 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 7 c1pyuD_ 100.0 100 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 8 c1uheA_ 100.0 34 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 9 c2pjhB_ 96.5 12 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 10 c1cz5A_ 93.1 18 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 11 d1cz5a1 82.2 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 12 c3mt1B_ 74.9 15 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 13 c1tufA_ 70.7 16 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi 14 c3krtC_ 65.5 13 PDB header:oxidoreductase Chain: C: PDB Molecule:crotonyl coa reductase; PDBTitle: crystal structure of putative crotonyl coa reductase from streptomyces2 coelicolor a3(2) 15 c2yxxA_ 63.9 10 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) 16 c2glwA_ 60.5 33 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 17 c2o0tB_ 57.8 12 PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation 18 c4a10A_ 57.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:octenoyl-coa reductase/carboxylase; PDBTitle: apo-structure of 2-octenoyl-coa carboxylase reductase cinf from2 streptomyces sp. 19 c2ejvA_ 55.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:l-threonine 3-dehydrogenase; PDBTitle: crystal structure of threonine 3-dehydrogenase complexed with nad+ 20 d1qw1a1 53.2 16 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 21 c1h2bA_ not modelled 50.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of the alcohol dehydrogenase from the2 hyperthermophilic archaeon aeropyrum pernix at 1.65a3 resolution 22 d1ylea1 not modelled 50.5 21 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:AstA-like 23 c1kevB_ not modelled 50.2 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: structure of nadp-dependent alcohol dehydrogenase 24 c2eihA_ not modelled 50.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of nad-dependent alcohol dehydrogenase 25 c2ouiB_ not modelled 47.8 26 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: d275p mutant of alcohol dehydrogenase from protozoa entamoeba2 histolytica 26 c2p3eA_ not modelled 46.9 15 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus 27 c2xaaC_ not modelled 45.5 17 PDB header:oxidoreductase Chain: C: PDB Molecule:secondary alcohol dehydrogenase; PDBTitle: alcohol dehydrogenase adh-'a' from rhodococcus ruber dsm2 44541 at ph 8.5 in complex with nad and butane-1,4-diol 28 c2dfvB_ not modelled 43.1 17 PDB header:oxidoreductase Chain: B: PDB Molecule:probable l-threonine 3-dehydrogenase; PDBTitle: hyperthermophilic threonine dehydrogenase from pyrococcus horikoshii 29 c2vwrA_ not modelled 42.6 19 PDB header:protein-binding Chain: A: PDB Molecule:ligand of numb protein x 2; PDBTitle: crystal structure of the second pdz domain of numb-binding2 protein 2 30 d1wrua1 not modelled 42.4 21 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 31 c1e3jA_ not modelled 42.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp(h)-dependent ketose reductase; PDBTitle: ketose reductase (sorbitol dehydrogenase) from silverleaf2 whitefly 32 c1r37B_ not modelled 41.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent alcohol dehydrogenase; PDBTitle: alcohol dehydrogenase from sulfolobus solfataricus2 complexed with nad(h) and 2-ethoxyethanol 33 c1piwA_ not modelled 41.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical zinc-type alcohol dehydrogenase- PDBTitle: apo and holo structures of an nadp(h)-dependent cinnamyl2 alcohol dehydrogenase from saccharomyces cerevisiae 34 c1lluD_ not modelled 40.7 24 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase; PDBTitle: the ternary complex of pseudomonas aeruginosa alcohol2 dehydrogenase with its coenzyme and weak substrate 35 c2j66A_ not modelled 39.4 10 PDB header:lyase Chain: A: PDB Molecule:btrk; PDBTitle: structural characterisation of btrk decarboxylase from2 butirosin biosynthesis 36 c1pl6A_ not modelled 36.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:sorbitol dehydrogenase; PDBTitle: human sdh/nadh/inhibitor complex 37 c1p0fA_ not modelled 36.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: crystal structure of the binary complex: nadp(h)-dependent vertebrate2 alcohol dehydrogenase (adh8) with the cofactor nadp 38 c3n29A_ not modelled 34.7 13 PDB header:lyase Chain: A: PDB Molecule:carboxynorspermidine decarboxylase; PDBTitle: crystal structure of carboxynorspermidine decarboxylase complexed with2 norspermidine from campylobacter jejuni 39 d3cdda1 not modelled 34.6 24 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 40 c1kolA_ not modelled 33.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:formaldehyde dehydrogenase; PDBTitle: crystal structure of formaldehyde dehydrogenase 41 d1uufa1 not modelled 33.6 14 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 42 d1hkva1 not modelled 33.5 9 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 43 c1yqxB_ not modelled 33.4 18 PDB header:oxidoreductase Chain: B: PDB Molecule:sinapyl alcohol dehydrogenase; PDBTitle: sinapyl alcohol dehydrogenase at 2.5 angstrom resolution 44 d1nxza1 not modelled 33.0 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 45 d3d37a2 not modelled 32.2 18 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 46 d1pl8a1 not modelled 30.9 18 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 47 c2hcyD_ not modelled 30.7 15 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 1; PDBTitle: yeast alcohol dehydrogenase i, saccharomyces cerevisiae fermentative2 enzyme 48 c1cdoB_ not modelled 30.4 17 PDB header:oxidoreductase (ch-oh(d)-nad(a)) Chain: B: PDB Molecule:alcohol dehydrogenase; PDBTitle: alcohol dehydrogenase (e.c.1.1.1.1) (ee isozyme) complexed with2 nicotinamide adenine dinucleotide (nad), and zinc 49 d2csja1 not modelled 30.1 28 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 50 c1uufA_ not modelled 29.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:zinc-type alcohol dehydrogenase-like protein PDBTitle: crystal structure of a zinc-type alcohol dehydrogenase-like2 protein yahk 51 d1ejia_ not modelled 29.1 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 52 c3g7kD_ not modelled 27.9 25 PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase 53 d1uija1 not modelled 27.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 54 c3m6iA_ not modelled 27.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arabinitol 4-dehydrogenase; PDBTitle: l-arabinitol 4-dehydrogenase 55 c1knwA_ not modelled 27.2 8 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase 56 d1knwa1 not modelled 26.8 8 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 57 c2vwpA_ not modelled 26.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose dehydrogenase; PDBTitle: haloferax mediterranei glucose dehydrogenase in complex2 with nadph and zn. 58 c3ggeA_ not modelled 26.5 28 PDB header:protein binding Chain: A: PDB Molecule:pdz domain-containing protein gipc2; PDBTitle: crystal structure of the pdz domain of pdz domain-containing protein2 gipc2 59 c3uogB_ not modelled 26.3 24 PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehydrogenase from sinorhizobium2 meliloti 1021 60 d1rv3a_ not modelled 26.1 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 61 d1uepa_ not modelled 25.8 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 62 c2dphA_ not modelled 25.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:formaldehyde dismutase; PDBTitle: crystal structure of formaldehyde dismutase 63 c1rjwA_ not modelled 25.2 27 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of nad(+)-dependent alcohol dehydrogenase2 from bacillus stearothermophilus strain lld-r 64 d2a7va1 not modelled 25.1 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 65 c2a7vA_ not modelled 25.1 17 PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2 66 c3n0lA_ not modelled 25.1 18 PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni 67 c3n2bD_ not modelled 24.5 13 PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. 68 c2cf5A_ not modelled 24.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:cinnamyl alcohol dehydrogenase; PDBTitle: crystal structures of the arabidopsis cinnamyl alcohol2 dehydrogenases, atcad5 69 d1kwaa_ not modelled 23.7 28 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 70 d1kola1 not modelled 23.7 14 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 71 c1f8fA_ not modelled 23.3 33 PDB header:oxidoreductase Chain: A: PDB Molecule:benzyl alcohol dehydrogenase; PDBTitle: crystal structure of benzyl alcohol dehydrogenase from acinetobacter2 calcoaceticus 72 d1ee6a_ not modelled 23.2 29 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 73 c1ma0B_ not modelled 23.2 23 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione-dependent formaldehyde dehydrogenase; PDBTitle: ternary complex of human glutathione-dependent formaldehyde2 dehydrogenase with nad+ and dodecanoic acid 74 c3cosD_ not modelled 23.1 24 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 4; PDBTitle: crystal structure of human class ii alcohol dehydrogenase (adh4) in2 complex with nad and zn 75 c3bk7A_ not modelled 23.1 28 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 76 c3hu2C_ not modelled 22.5 12 PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97 n-d1 r86a mutant in complex with atpgs 77 c2xkxB_ not modelled 22.3 35 PDB header:structural protein Chain: B: PDB Molecule:disks large homolog 4; PDBTitle: single particle analysis of psd-95 in negative stain 78 d1uika1 not modelled 22.3 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 79 c2qg1A_ not modelled 22.3 18 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: crystal structure of the 11th pdz domain of mpdz (mupp1) 80 d1bj4a_ not modelled 22.1 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 81 c1hf3A_ not modelled 22.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase e chain; PDBTitle: atomic x-ray structure of liver alcohol dehydrogenase2 containing cadmium and a hydroxide adduct to nadh 82 d1mfga_ not modelled 21.9 26 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 83 c1d7kB_ not modelled 21.7 12 PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution 84 c3cyyA_ not modelled 21.3 33 PDB header:peptide binding protein Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: the crystal structure of zo-1 pdz2 in complex with the cx43 peptide 85 d2f4pa1 not modelled 21.2 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 86 c3ecdC_ not modelled 21.0 20 PDB header:transferase Chain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei 87 d1a8pa1 not modelled 20.8 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 88 d2h3la1 not modelled 20.0 26 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 89 d1wifa_ not modelled 19.7 35 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 90 d2byga1 not modelled 19.3 39 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 91 d1uija2 not modelled 19.3 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 92 d2f0aa1 not modelled 19.1 33 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 93 d1ujda_ not modelled 19.0 28 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 94 d1f3ta1 not modelled 19.0 9 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 95 c1u37A_ not modelled 18.8 20 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 96 c1u38A_ not modelled 18.8 20 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 97 c3b70A_ not modelled 18.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl reductase; PDBTitle: crystal structure of aspergillus terreus trans-acting lovastatin2 polyketide enoyl reductase (lovc) with bound nadp 98 d1qaua_ not modelled 18.6 30 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 99 d1dgwa_ not modelled 18.5 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0