Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3n2bD_

Fold library idPDB HeaderMoleculeTitle
c3n2bD_PDB header: lyaseChain: D: PDB Molecule: diaminopimelate decarboxylase;PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae.


Added to library: Sat Aug 28 23:09:27 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLN
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)

S
TTSSTT
SST
SS
GGG


 .........80.........90.........100.........110.........120.........130.........140
Sequence TLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGE
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TT
SSTT

GGG

TT

TT
S
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAP
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) T

B




TTT
SS
SB
GGGSTT



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence FIDATDRLLALIDSLKAEGIHIRHLDVGGGLSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVE
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TT





S


GGG
TTS

SGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence FLKHTEHKNFAIIDAAMNDLIWQDIIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLVLQEGDLLAVRSS
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
SS
S

TTT




SS


S


SSS
TT



TT
SS
 .........360.........370.........380.........390........
Sequence GAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLPE
Predicted secondary structure























SS confidence















































Known secondary structure (DSSP) SSSSGGG


TTT



TT



GGGGGTT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D