Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	L	G	E	F	I	V	E	K	Q	H	E	F	S	H	A	T	G	E	L	T	A	L	L	S	A	I	K	L	G	A	K	I	I	H	R	D	I	N	K	A	G	L	V	D	I	L	G	A	S	G	A	E	N	V	Q	G	E
Secondary structure
SS confidence
Disorder		?	?	?											?	?	?	?	?																									?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	Q	Q	K	L	D	L	F	A	N	E	K	L	K	A	A	L	K	A	R	D	I	V	A	G	I	A	S	E	E	E	D	E	I	V	V	F	E	G	C	E	H	A	K	Y	V	V	L	M	D	P	L	D	G	S	S	N	I	D	V
Secondary structure
SS confidence
Disorder																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	V	S	V	G	T	I	F	S	I	Y	R	R	V	T	P	V	G	T	P	V	T	E	E	D	F	L	Q	P	G	N	K	Q	V	A	A	G	Y	V	V	Y	G	S	S	T	M	L	V	Y	T	T	G	C	G	V	H	A	F	T	Y
Secondary structure
SS confidence
Disorder														?		?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	P	S	L	G	V	F	C	L	C	Q	E	R	M	R	F	P	E	K	G	K	T	Y	S	I	N	E	G	N	Y	I	K	F	P	N	G	V	K	K	Y	I	K	F	C	Q	E	E	D	K	S	T	N	R	P	Y	T	S	R	Y	I
Secondary structure
SS confidence
Disorder																																?																?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	S	L	V	A	D	F	H	R	N	L	L	K	G	G	I	Y	L	Y	P	S	T	A	S	H	P	D	G	K	L	R	L	L	Y	E	C	N	P	M	A	F	L	A	E	Q	A	G	G	K	A	S	D	G	K	E	R	I	L	D	I
Secondary structure
SS confidence
Disorder																								?	?	?																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Sequence		I	P	E	T	L	H	Q	R	R	S	F	F	V	G	N	D	H	M	V	E	D	V	E	R	F	I	R	E	F	P	D	A
Secondary structure
SS confidence
Disorder																													?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nuw chain A Region: 1 - 329 Aligned: 325 Modelled: 329 Confidence: 100.0% Identity: 42% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2gq1 chain A Region: 1 - 332 Aligned: 310 Modelled: 309 Confidence: 100.0% Identity: 97% PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions Phyre2 PDB 2fhy chain L Region: 1 - 329 Aligned: 316 Modelled: 320 Confidence: 100.0% Identity: 44% PDB header:hydrolase Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1; PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor Phyre2 PDB 1fta chain A Region: 1 - 329 Aligned: 317 Modelled: 329 Confidence: 100.0% Identity: 44% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1spi chain A Region: 1 - 327 Aligned: 305 Modelled: 307 Confidence: 100.0% Identity: 47% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1bk4 chain A Region: 1 - 329 Aligned: 307 Modelled: 311 Confidence: 100.0% Identity: 45% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1d9q chain A Region: 1 - 327 Aligned: 316 Modelled: 318 Confidence: 100.0% Identity: 46% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 3uks chain B Region: 1 - 329 Aligned: 312 Modelled: 326 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative; PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii Phyre2 PDB 1lbv chain A Region: 21 - 327 Aligned: 251 Modelled: 272 Confidence: 99.9% Identity: 21% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1g0h chain A Region: 22 - 326 Aligned: 248 Modelled: 270 Confidence: 99.9% Identity: 17% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2hhm chain A Region: 20 - 331 Aligned: 262 Modelled: 293 Confidence: 99.8% Identity: 16% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2qfl chain A Region: 22 - 329 Aligned: 255 Modelled: 277 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli Phyre2 PDB 2p3n chain B Region: 21 - 328 Aligned: 245 Modelled: 282 Confidence: 99.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: thermotoga maritima impase tm1415 Phyre2 PDB 3luz chain A Region: 22 - 328 Aligned: 234 Modelled: 262 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:extragenic suppressor protein suhb; PDBTitle: crystal structure of extragenic suppressor protein suhb from2 bartonella henselae, via combined iodide sad molecular replacement Phyre2 PDB 1vdw chain A Region: 26 - 328 Aligned: 247 Modelled: 271 Confidence: 99.8% Identity: 19% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2q74 chain B Region: 19 - 329 Aligned: 233 Modelled: 274 Confidence: 99.8% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: mycobacterium tuberculosis suhb Phyre2 PDB 2czh chain B Region: 21 - 327 Aligned: 241 Modelled: 267 Confidence: 99.8% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form) Phyre2 PDB 2fvz chain B Region: 21 - 326 Aligned: 241 Modelled: 271 Confidence: 99.8% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: human inositol monophosphosphatase 2 Phyre2 PDB 1xi6 chain A Region: 21 - 322 Aligned: 232 Modelled: 262 Confidence: 99.8% Identity: 19% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2pcr chain A Region: 21 - 331 Aligned: 231 Modelled: 255 Confidence: 99.7% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5 Phyre2 1 d1nuwa_ 2 c2gq1A_ 3 c2fhyL_ 4 d1ftaa_ 5 d1spia_ 6 d1bk4a_ 7 d1d9qa_ 8 c3uksB_ 9 d1lbva_ 10 d1g0ha_ 11 d2hhma_ 12 c2qflA_ 13 c2p3nB_ 14 c3luzA_ 15 d1vdwa_ 16 c2q74B_ 17 c2czhB_ 18 c2fvzB_ 19 d1xi6a_ 20 c2pcrA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nuwa_ 100.0 42 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 2 c2gq1A_ 100.0 97 PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions 3 c2fhyL_ 100.0 44 PDB header:hydrolase Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1; PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor 4 d1ftaa_ 100.0 44 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 5 d1spia_ 100.0 47 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 6 d1bk4a_ 100.0 45 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 7 d1d9qa_ 100.0 46 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 8 c3uksB_ 100.0 28 PDB header:hydrolase Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative; PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii 9 d1lbva_ 99.9 21 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 10 d1g0ha_ 99.9 17 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 11 d2hhma_ 99.8 16 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 12 c2qflA_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli 13 c2p3nB_ 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: thermotoga maritima impase tm1415 14 c3luzA_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:extragenic suppressor protein suhb; PDBTitle: crystal structure of extragenic suppressor protein suhb from2 bartonella henselae, via combined iodide sad molecular replacement 15 d1vdwa_ 99.8 19 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 16 c2q74B_ 99.8 19 PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: mycobacterium tuberculosis suhb 17 c2czhB_ 99.8 19 PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form) 18 c2fvzB_ 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: human inositol monophosphosphatase 2 19 d1xi6a_ 99.8 19 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 20 c2pcrA_ 99.7 15 PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5 21 d1jp4a_ not modelled 99.7 18 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 22 d1ka1a_ not modelled 99.7 15 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 23 c3b8bA_ not modelled 99.7 19 PDB header:hydrolase Chain: A: PDB Molecule:cysq, sulfite synthesis pathway protein; PDBTitle: crystal structure of cysq from bacteroides thetaiotaomicron, a2 bacterial member of the inositol monophosphatase family 24 d1inpa_ not modelled 99.3 14 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 25 d1o12a1 not modelled 66.2 28 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 26 d1ni9a_ not modelled 53.9 19 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:GlpX-like bacterial fructose-1,6-bisphosphatase 27 c2icuB_ not modelled 35.5 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein yedk; PDBTitle: crystal structure of hypothetical protein yedk from escherichia coli 28 d1hi9a_ not modelled 33.8 20 Fold:Dipeptide transport protein Superfamily:Dipeptide transport protein Family:Dipeptide transport protein 29 d1k7ja_ not modelled 32.0 25 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 30 d1r89a1 not modelled 25.7 33 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 31 d2bdva1 not modelled 23.1 15 Fold:BB1717-like Superfamily:BB1717-like Family:BB1717-like 32 d3pmga4 not modelled 18.9 83 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 33 d1kfia4 not modelled 18.3 67 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 34 c3f56F_ not modelled 17.5 20 PDB header:structural protein Chain: F: PDB Molecule:csos1d; PDBTitle: the structure of a previously undetected carboxysome shell2 protein: csos1d from prochlorococcus marinus med4 35 d2dlxa1 not modelled 17.2 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:UAS domain 36 c1avoA_ not modelled 14.6 35 PDB header:proteasome activator Chain: A: PDB Molecule:11s regulator; PDBTitle: proteasome activator reg(alpha) 37 d1uxya2 not modelled 13.8 17 Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 38 d1x87a_ not modelled 13.0 23 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 39 c1svfB_ not modelled 11.2 40 PDB header:viral protein Chain: B: PDB Molecule:protein (fusion glycoprotein); PDBTitle: paramyxovirus sv5 fusion protein core 40 c2h31A_ not modelled 10.9 10 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 41 c1sz1A_ not modelled 10.3 33 PDB header:transferase/rna Chain: A: PDB Molecule:trna nucleotidyltransferase; PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes 42 d2guka1 not modelled 10.0 19 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 43 d1f7da_ not modelled 9.5 16 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 44 d1ufga_ not modelled 9.3 28 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 45 d3orca_ not modelled 8.5 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 46 c3c1zA_ not modelled 8.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 47 d1lj8a4 not modelled 7.9 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 48 d1ak0a_ not modelled 7.9 14 Fold:Phospholipase C/P1 nuclease Superfamily:Phospholipase C/P1 nuclease Family:P1 nuclease 49 d2aega1 not modelled 7.8 14 Fold:BB1717-like Superfamily:BB1717-like Family:BB1717-like 50 c2aegA_ not modelled 7.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein agr_pat_140; PDBTitle: x-ray crystal structure of protein atu5096 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr63. 51 c2k2wA_ not modelled 7.4 18 PDB header:cell cycle Chain: A: PDB Molecule:recombination and dna repair protein; PDBTitle: second brct domain of nbs1 52 c1m2wA_ not modelled 7.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol dehydrogenase; PDBTitle: pseudomonas fluorescens mannitol 2-dehydrogenase ternary complex with2 nad and d-mannitol 53 d1icfi_ not modelled 7.2 16 Fold:Thyroglobulin type-1 domain Superfamily:Thyroglobulin type-1 domain Family:Thyroglobulin type-1 domain 54 d2bbga_ not modelled 7.0 36 Fold:Amb V allergen Superfamily:Amb V allergen Family:Amb V allergen 55 d2i9wa3 not modelled 6.7 15 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 56 d1zsqa1 not modelled 6.6 14 Fold:PH domain-like barrel Superfamily:PH domain-like Family:GRAM domain 57 c2oszA_ not modelled 6.6 7 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 58 d1m1la_ not modelled 6.5 50 Fold:Suppressor of Fused, N-terminal domain Superfamily:Suppressor of Fused, N-terminal domain Family:Suppressor of Fused, N-terminal domain 59 d2qw7a1 not modelled 6.4 20 Fold:OB-fold Superfamily:EutN/CcmL-like Family:EutN/CcmL-like 60 d1yira1 not modelled 6.3 31 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain 61 d1nkga3 not modelled 6.2 23 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Rhamnogalacturonase B, RhgB, N-terminal domain 62 d1tk9a_ not modelled 6.0 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 63 c1ikqA_ not modelled 6.0 47 PDB header:transferase Chain: A: PDB Molecule:exotoxin a; PDBTitle: pseudomonas aeruginosa exotoxin a, wild type 64 c3nohA_ not modelled 5.9 33 PDB header:peptide binding protein Chain: A: PDB Molecule:putative peptide binding protein; PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution 65 c3jxoB_ not modelled 5.8 15 PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 66 d1f15b_ not modelled 5.7 25 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Bromoviridae-like VP 67 c1f15C_ not modelled 5.7 25 PDB header:virus Chain: C: PDB Molecule:coat protein; PDBTitle: cucumber mosaic virus (strain fny) 68 d1z9ha1 not modelled 5.6 11 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 69 d1ydua1 not modelled 5.4 6 Fold:At5g01610-like Superfamily:At5g01610-like Family:At5g01610-like 70 d1f74a_ not modelled 5.4 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 71 d1tu2b1 not modelled 5.3 22 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 72 d2cqqa1 not modelled 5.3 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 73 d1olma2 not modelled 5.3 18 Fold:Supernatant protein factor (SPF), C-terminal domain Superfamily:Supernatant protein factor (SPF), C-terminal domain Family:Supernatant protein factor (SPF), C-terminal domain 74 d2hd3a1 not modelled 5.3 20 Fold:OB-fold Superfamily:EutN/CcmL-like Family:EutN/CcmL-like 75 c2zv4O_ not modelled 5.3 23 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 76 d2fb5a1 not modelled 5.2 13 Fold:YojJ-like Superfamily:YojJ-like Family:YojJ-like 77 d1ukfa_ not modelled 5.1 22 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Avirulence protein Avrpph3

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0