Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ47208
DateThu Jan 5 12:36:39 GMT 2012
Unique Job ID19fc8736bea991d9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3dmyA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein fdra;
PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli
Confidence and coverage
Confidence:100.0% Coverage: 81%
447 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNAT
Secondary structure 





















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Disorder  ??



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?????





?










???




??

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   .........70.........80.........90.........100.........110.........120
Sequence  PNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANL
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?????









?????????????
?









??





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   .........130.........140.........150.........160.........170.........180
Sequence  ALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMI
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?
?
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   .........190.........200.........210.........220.........230.........240
Sequence  AGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISA
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?







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   .........250.........260.........270.........280.........290.........300
Sequence  LTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVW
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?????????
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   .........310.........320.........330.........340.........350.........360
Sequence  FASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADD
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Disorder  ??












????????????????



















?????????
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   .........370.........380.........390.........400.........410.........420
Sequence  THQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIG
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Disorder  ???????????








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   .........430.........440.........450.........460.........470.........480
Sequence  FGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVS
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???


















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   .........490.........500.........510.........520.........530.........540
Sequence  SLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPV
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???
??????????????




























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   .........550.....
Sequence  AGGNKKLARLLERLQ
Secondary structure 


SS confidence 














Disorder 












??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3dmy chain A

3D model

Region: 101 - 555
Aligned: 447
Modelled: 455
Confidence: 100.0%
Identity: 96%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein fdra;
PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli

Phyre2

PDB 2csu chain B

3D model

Region: 66 - 500
Aligned: 399
Modelled: 428
Confidence: 100.0%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3

Phyre2

PDB 3mwd chain B

3D model

Region: 91 - 324
Aligned: 230
Modelled: 234
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: B: PDB Molecule:atp-citrate synthase;
PDBTitle: truncated human atp-citrate lyase with citrate bound

Phyre2

PDB 2nu8 chain D

3D model

Region: 91 - 326
Aligned: 230
Modelled: 236
Confidence: 100.0%
Identity: 18%
PDB header:ligase
Chain: D: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase

Phyre2

PDB 2fpg chain A

3D model

Region: 91 - 326
Aligned: 230
Modelled: 232
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain,
PDBTitle: crystal structure of pig gtp-specific succinyl-coa2 synthetase in complex with gdp

Phyre2

PDB 2yv2 chain A

3D model

Region: 91 - 325
Aligned: 216
Modelled: 220
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1

Phyre2

PDB 2yv1 chain A

3D model

Region: 91 - 321
Aligned: 225
Modelled: 231
Confidence: 100.0%
Identity: 19%
PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 methanocaldococcus jannaschii dsm 2661

Phyre2

PDB 1oi7 chain A

3D model

Region: 91 - 325
Aligned: 215
Modelled: 220
Confidence: 100.0%
Identity: 18%
PDB header:synthetase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus

Phyre2

PDB 1euc chain A domain 2

3D model

Region: 174 - 326
Aligned: 148
Modelled: 152
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2

PDB 2nu7 chain A domain 2

3D model

Region: 174 - 326
Aligned: 149
Modelled: 153
Confidence: 100.0%
Identity: 19%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2

PDB 1oi7 chain A domain 2

3D model

Region: 174 - 315
Aligned: 136
Modelled: 142
Confidence: 100.0%
Identity: 23%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2

PDB 2csu chain A domain 2

3D model

Region: 176 - 317
Aligned: 136
Modelled: 142
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2

PDB 2csu chain A domain 3

3D model

Region: 328 - 500
Aligned: 155
Modelled: 173
Confidence: 99.9%
Identity: 14%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2

PDB 2nu7 chain B domain 1

3D model

Region: 326 - 494
Aligned: 129
Modelled: 152
Confidence: 99.6%
Identity: 16%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2

PDB 1euc chain B domain 1

3D model

Region: 316 - 493
Aligned: 137
Modelled: 161
Confidence: 99.5%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2

PDB 2duw chain A

3D model

Region: 66 - 186
Aligned: 114
Modelled: 121
Confidence: 99.4%
Identity: 17%
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae

Phyre2

PDB 2csu chain A domain 1

3D model

Region: 66 - 175
Aligned: 110
Modelled: 110
Confidence: 99.4%
Identity: 18%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: CoA-binding domain

Phyre2

PDB 2nu9 chain E

3D model

Region: 331 - 492
Aligned: 126
Modelled: 148
Confidence: 99.3%
Identity: 17%
PDB header:ligase
Chain: E: PDB Molecule:succinyl-coa synthetase beta chain;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form

Phyre2

PDB 1iuk chain A

3D model

Region: 66 - 183
Aligned: 112
Modelled: 118
Confidence: 99.2%
Identity: 10%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: CoA-binding domain

Phyre2

PDB 1y81 chain A domain 1

3D model

Region: 66 - 178
Aligned: 109
Modelled: 111
Confidence: 99.2%
Identity: 11%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: CoA-binding domain

Phyre2

PDB 3n0l chain A

3D model

Region: 9 - 171
Aligned: 110
Modelled: 108
Confidence: 71.7%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni

Phyre2
1

c3dmyA_
2

c2csuB_
3

c3mwdB_
4

c2nu8D_
5

c2fpgA_
6

c2yv2A_
7

c2yv1A_
8

c1oi7A_
9

d1euca2
10

d2nu7a2
11

d1oi7a2
12

d2csua2
13

d2csua3
14

d2nu7b1
15

d1eucb1
16

c2duwA_
17

d2csua1
18

c2nu9E_
19

d1iuka_
20

d1y81a1
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c3n0lA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3dmyA_



100.0 96 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein fdra;
PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli
2c2csuB_



100.0 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
3c3mwdB_



100.0 12 PDB header:transferase
Chain: B: PDB Molecule:atp-citrate synthase;
PDBTitle: truncated human atp-citrate lyase with citrate bound
4c2nu8D_



100.0 18 PDB header:ligase
Chain: D: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase
5c2fpgA_



100.0 20 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain,
PDBTitle: crystal structure of pig gtp-specific succinyl-coa2 synthetase in complex with gdp
6c2yv2A_



100.0 21 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1
7c2yv1A_



100.0 19 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 methanocaldococcus jannaschii dsm 2661
8c1oi7A_



100.0 18 PDB header:synthetase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus
9d1euca2



100.0 20 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
10d2nu7a2



100.0 19 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
11d1oi7a2



100.0 23 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
12d2csua2



100.0 20 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
13d2csua3



99.9 14 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
14d2nu7b1



99.6 16 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
15d1eucb1



99.5 20 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
16c2duwA_



99.4 17 PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
17d2csua1



99.4 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
18c2nu9E_



99.3 17 PDB header:ligase
Chain: E: PDB Molecule:succinyl-coa synthetase beta chain;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form
19d1iuka_



99.2 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
20d1y81a1



99.2 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
21c1eucB_



not modelled 99.1 22 PDB header:ligase
Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain;
PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase
22d2nu7a1



not modelled 99.1 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
23d1euca1



not modelled 99.1 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
24d1oi7a1



not modelled 99.1 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
25d2d59a1



not modelled 99.0 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
26c3ff4A_



not modelled 98.6 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
27c3e18A_



not modelled 97.4 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua
28c3moiA_



not modelled 97.4 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50
29c3m2tA_



not modelled 97.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum
30c3dtyA_



not modelled 97.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae
31c3fd8A_



not modelled 97.3 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
32c3oqbF_



not modelled 97.2 15 PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
33c2q4eB_



not modelled 97.2 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable oxidoreductase at4g09670;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670
34c3rbvA_



not modelled 97.2 21 PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar 3-ketoreductase;
PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp
35c3q2kB_



not modelled 97.2 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca
36c3f4lF_



not modelled 97.1 22 PDB header:oxidoreductase
Chain: F: PDB Molecule:putative oxidoreductase yhhx;
PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647
37c3btuD_



not modelled 97.1 15 PDB header:transcription
Chain: D: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k]
38c3evnA_



not modelled 97.1 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
39c2ixaA_



not modelled 97.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: a-zyme, n-acetylgalactosaminidase
40d1lc0a1



not modelled 97.1 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
41c3ec7C_



not modelled 97.1 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative dehydrogenase;
PDBTitle: crystal structure of putative dehydrogenase from salmonella2 typhimurium lt2
42d1h6da1



not modelled 97.1 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
43c2o48X_



not modelled 97.1 16 PDB header:oxidoreductase
Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase;
PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase
44c3kuxA_



not modelled 97.1 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis
45c3db2C_



not modelled 97.0 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
46c2p2sA_



not modelled 97.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution
47c3e9mC_



not modelled 97.0 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
48c3e82A_



not modelled 97.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from2 klebsiella pneumoniae
49c1zh8B_



not modelled 97.0 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution
50c1lc3A_



not modelled 96.9 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:biliverdin reductase a;
PDBTitle: crystal structure of a biliverdin reductase enzyme-cofactor2 complex
51c3ip3D_



not modelled 96.9 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, putative;
PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima
52c1h6dL_



not modelled 96.9 18 PDB header:protein translocation
Chain: L: PDB Molecule:precursor form of glucose-fructose
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol
53c1ofgF_



not modelled 96.9 18 PDB header:oxidoreductase
Chain: F: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: glucose-fructose oxidoreductase
54c1drwA_



not modelled 96.9 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: escherichia coli dhpr/nhdh complex
55c3gfgB_



not modelled 96.9 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa;
PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form
56c2glxD_



not modelled 96.9 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase;
PDBTitle: crystal structure analysis of bacterial 1,5-af reductase
57c3nt5B_



not modelled 96.9 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase;
PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose
58c3fhlC_



not modelled 96.9 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343
59c3ezyB_



not modelled 96.8 10 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima
60c1evjC_



not modelled 96.8 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: crystal structure of glucose-fructose oxidoreductase (gfor)2 delta1-22 s64d
61d1ydwa1



not modelled 96.8 8 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
62c3c1aB_



not modelled 96.8 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (zp_00056571.1) from2 magnetospirillum magnetotacticum ms-1 at 1.85 a resolution
63c2ho3D_



not modelled 96.7 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
64c1xeaD_



not modelled 96.7 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
65c1e5lA_



not modelled 96.7 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine reductase;
PDBTitle: apo saccharopine reductase from magnaporthe grisea
66c3euwB_



not modelled 96.6 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032
67d1ryda1



not modelled 96.6 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
68c3mwdA_



not modelled 96.6 15 PDB header:transferase
Chain: A: PDB Molecule:atp-citrate synthase;
PDBTitle: truncated human atp-citrate lyase with citrate bound
69d1zh8a1



not modelled 96.4 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
70c3bioB_



not modelled 96.4 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83
71c3oa2B_



not modelled 96.4 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:wbpb;
PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from pseudomonas2 aeruginosa in complex with nad at 1.5 angstrom resolution
72c3oa0B_



not modelled 96.3 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:lipopolysaccaride biosynthesis protein wbpb;
PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from thermus2 thermophilus in complex with nad and udp-glcnaca
73c3v5nA_



not modelled 96.3 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti
74d1xeaa1



not modelled 96.3 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
75c2dc1A_



not modelled 96.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
76c3ceaA_



not modelled 96.2 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase;
PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution
77c3ijpA_



not modelled 96.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution
78d2nvwa1



not modelled 96.1 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
79c2axqA_



not modelled 96.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
80d1diha1



not modelled 96.0 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
81d1j5pa4



not modelled 95.9 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
82c3do5A_



not modelled 95.9 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution
83c3uuwB_



not modelled 95.5 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase with nad(p)-binding rossmann-fold
PDBTitle: 1.63 angstrom resolution crystal structure of dehydrogenase (mvim)2 from clostridium difficile.
84c3dapB_



not modelled 95.4 8 PDB header:oxidoreductase
Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase;
PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline
85c1j5pA_



not modelled 95.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate dehydrogenase;
PDBTitle: crystal structure of aspartate dehydrogenase (tm1643) from thermotoga2 maritima at 1.9 a resolution
86d1tlta1



not modelled 95.2 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
87c2vt2A_



not modelled 95.0 12 PDB header:transcription
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: structure and functional properties of the bacillus2 subtilis transcriptional repressor rex
88c1tltB_



not modelled 95.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase (virulence factor mvim homolog);
PDBTitle: crystal structure of a putative oxidoreductase (virulence factor mvim2 homolog)
89d2g0ta1



not modelled 94.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
90c2z2vA_



not modelled 94.8 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1688;
PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
91c2dt5A_



not modelled 94.7 11 PDB header:dna binding protein
Chain: A: PDB Molecule:at-rich dna-binding protein;
PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8
92d1f06a1



not modelled 94.6 8 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
93c2nvwB_



not modelled 94.4 14 PDB header:transcription
Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis
94c3ketA_



not modelled 94.1 15 PDB header:transcription/dna
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator
95d2dt5a2



not modelled 93.6 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Transcriptional repressor Rex, C-terminal domain
96c3bezC_



not modelled 92.9 22 PDB header:hydrolase
Chain: C: PDB Molecule:protease 4;
PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals
97c1pgjA_



not modelled 92.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase;
PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei
98c3ic5A_



not modelled 92.2 7 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
99c2iexA_



not modelled 92.0 18 PDB header:lyase
Chain: A: PDB Molecule:dihydroxynapthoic acid synthetase;
PDBTitle: crystal structure of dihydroxynapthoic acid synthetase (gk2873) from2 geobacillus kaustophilus hta426
100c1yl7F_



not modelled 90.9 10 PDB header:oxidoreductase
Chain: F: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: the crystal structure of mycobacterium tuberculosis2 dihydrodipicolinate reductase (rv2773c) in complex with nadh (crystal3 form c)
101c2obnA_



not modelled 90.7 16 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution
102d1ebfa1



not modelled 90.5 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
103c2p4qA_



not modelled 90.5 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating 1;
PDBTitle: crystal structure analysis of gnd1 in saccharomyces cerevisiae
104c1vm6B_



not modelled 90.3 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase (tm1520) from2 thermotoga maritima at 2.27 a resolution
105d1q52a_



not modelled 89.6 16 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
106d1vm6a3



not modelled 89.5 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
107c3mtjA_



not modelled 89.4 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a
108d1yl7a1



not modelled 89.2 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
109d1rjma_



not modelled 89.0 16 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
110c2iz1C_



not modelled 88.8 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating;
PDBTitle: 6pdh complexed with pex inhibitor synchrotron data
111c3fwnB_



not modelled 88.7 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating;
PDBTitle: dimeric 6-phosphogluconate dehydrogenase complexed with 6-2 phosphogluconate and 2'-monophosphoadenosine-5'-diphosphate
112c1pgqA_



not modelled 88.4 16 PDB header:oxidoreductase (choh(d)-nadp+(a))
Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase;
PDBTitle: crystallographic study of coenzyme, coenzyme analogue and substrate2 binding in 6-phosphogluconate dehydrogenase: implications for nadp3 specificity and the enzyme mechanism
113c3h02F_



not modelled 88.3 20 PDB header:lyase
Chain: F: PDB Molecule:naphthoate synthase;
PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium.
114c2ejwB_



not modelled 87.5 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:homoserine dehydrogenase;
PDBTitle: homoserine dehydrogenase from thermus thermophilus hb8
115c3p5mB_



not modelled 86.6 20 PDB header:isomerase
Chain: B: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium avium
116c2ozpA_



not modelled 85.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (ttha1904) from thermus thermophilus
117c2vbiF_



not modelled 85.3 13 PDB header:lyase
Chain: F: PDB Molecule:pyruvate decarboxylase;
PDBTitle: holostructure of pyruvate decarboxylase from acetobacter2 pasteurianus
118c3rsiA_



not modelled 85.3 18 PDB header:isomerase
Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase;
PDBTitle: the structure of a putative enoyl-coa hydratase/isomerase from2 mycobacterium abscessus atcc 19977 / dsm 44196
119c1zpdA_



not modelled 85.3 17 PDB header:alcohol fermentation
Chain: A: PDB Molecule:pyruvate decarboxylase;
PDBTitle: pyruvate decarboxylase from zymomonas mobilis
120c3p2lD_



not modelled 85.2 12 PDB header:hydrolase
Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0